RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 WFDC2Q14508 124 aa10.76□□□□□ -0.69
SHROOM1-203ENST00000378679 NOP10Q9NPE3 64 aaKnown RBP10.76□□□□□ -0.69
SHROOM1-203ENST00000378679 F8P00451 2351 aa10.76□□□□□ -0.69
SHROOM1-203ENST00000378679 INAFM1C9JVW0 142 aa10.75□□□□□ -0.69
SHROOM1-203ENST00000378679 PSMB8P28062 276 aa10.75□□□□□ -0.69
SHROOM1-203ENST00000378679 FXYD2P54710 66 aa10.75□□□□□ -0.69
SHROOM1-203ENST00000378679 OR13C6PQ8NH95 151 aa10.75□□□□□ -0.69
SHROOM1-203ENST00000378679 RPL39LQ96EH5 51 aaKnown RBP10.75□□□□□ -0.69
SHROOM1-203ENST00000378679 CTRLP40313 264 aa10.75□□□□□ -0.69
SHROOM1-203ENST00000378679 DAD1P61803 113 aa10.75□□□□□ -0.69
SHROOM1-203ENST00000378679 COPS9Q8WXC6 57 aa10.75□□□□□ -0.69
SHROOM1-203ENST00000378679 F5H768 121 aa10.74□□□□□ -0.69
SHROOM1-203ENST00000378679 SPATA12Q7Z6I5 190 aa10.74□□□□□ -0.69
SHROOM1-203ENST00000378679 APOC4P55056 127 aa10.74□□□□□ -0.69
SHROOM1-203ENST00000378679 MBD6Q96DN6 1003 aa10.74□□□□□ -0.69
SHROOM1-203ENST00000378679 ZNF702PQ9H963 129 aa10.74□□□□□ -0.69
SHROOM1-203ENST00000378679 SCRT2Q9NQ03 307 aa10.74□□□□□ -0.69
SHROOM1-203ENST00000378679 K7EQG2 157 aa10.73□□□□□ -0.69
SHROOM1-203ENST00000378679 TSPAN13O95857 204 aa10.73□□□□□ -0.69
SHROOM1-203ENST00000378679 MALP21145 153 aa10.73□□□□□ -0.69
SHROOM1-203ENST00000378679 ZNF493Q6ZR52 646 aa10.73□□□□□ -0.69
SHROOM1-203ENST00000378679 CFAP46Q8IYW2 2715 aa10.73□□□□□ -0.69
SHROOM1-203ENST00000378679 TRAV25A0A0B4J276 109 aa10.73□□□□□ -0.69
SHROOM1-203ENST00000378679 LGALS9BQ3B8N2 356 aa10.73□□□□□ -0.69
SHROOM1-203ENST00000378679 LGALS9CQ6DKI2 356 aa10.73□□□□□ -0.69
SHROOM1-203ENST00000378679 PSMG3-AS1Q96PY0 264 aa10.73□□□□□ -0.69
SHROOM1-203ENST00000378679 PMVKQ15126 192 aa10.72□□□□□ -0.69
SHROOM1-203ENST00000378679 C9orf66Q5T8R8 295 aa10.72□□□□□ -0.69
SHROOM1-203ENST00000378679 C20orf173Q96LM9 149 aa10.72□□□□□ -0.69
SHROOM1-203ENST00000378679 MDFICQ9P1T7 246 aa10.72□□□□□ -0.69
SHROOM1-203ENST00000378679 CRIP1P50238 77 aa10.72□□□□□ -0.69
SHROOM1-203ENST00000378679 SRSF2Q01130 221 aaKnown RBP10.72□□□□□ -0.69
SHROOM1-203ENST00000378679 A0A1B0GXF2 115 aa10.71□□□□□ -0.69
SHROOM1-203ENST00000378679 IGLV1-40P01703 118 aa10.71□□□□□ -0.69
SHROOM1-203ENST00000378679 PLEKHB2Q96CS7 222 aa10.71□□□□□ -0.69
SHROOM1-203ENST00000378679 C9JAW5 83 aa10.71□□□□□ -0.7
SHROOM1-203ENST00000378679 LGALS9O00182 355 aa10.71□□□□□ -0.7
SHROOM1-203ENST00000378679 RNASE1P07998 156 aaKnown RBP10.71□□□□□ -0.7
SHROOM1-203ENST00000378679 PIFOQ8TCI5 191 aa10.71□□□□□ -0.7
SHROOM1-203ENST00000378679 F8VRH5 84 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 GAGE2BQ13066 116 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 GAGE2EQ4V326 116 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 SUMO4Q6EEV6 95 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 JPT2Q9H910 190 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 GAGE2DQ9UEU5 116 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 CRPP02741 224 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 HLA-DRB4P13762 266 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 HLA-DRB4X5D2U9 266 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 TMEM141Q96I45 108 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 MAP6D1Q9H9H5 199 aa10.7□□□□□ -0.7
SHROOM1-203ENST00000378679 LY6G6DO95868 133 aa10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 IGLV2-11P01706 119 aa10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 DEFB114Q30KQ6 69 aa10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 HELZ2Q9BYK8 2649 aaKnown RBP10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 TRBV25-1A0A075B6N4 114 aa10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 MRGPRG-AS1Q2M3A8 158 aa10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 LINC01006Q8NI28 216 aa10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 RNF152Q8N8N0 203 aa10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 CLUHP3Q96NS8 147 aa10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 TIMM21Q9BVV7 248 aa10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 TET2Q6N021 2002 aaPredicted RBP10.69□□□□□ -0.7
SHROOM1-203ENST00000378679 TRBV7-9A0A0J9YWB2 115 aa10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 LINC01545Q5VT33 79 aa10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 LRBAP50851 2863 aa10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 A0A096LPF7 62 aa10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 RNASE13Q5GAN3 156 aaKnown RBP10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 ZFAND6Q6FIF0 208 aa10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 C18orf65Q6ZTR6 163 aa10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 SMR3AQ99954 134 aa10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 TMEM243Q9BU79 118 aa10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 F8W735 103 aaPredicted RBP10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 C11orf68Q9H3H3 251 aaKnown RBP10.68□□□□□ -0.7
SHROOM1-203ENST00000378679 TRBV20-1A0A075B6N2 111 aa10.67□□□□□ -0.7
SHROOM1-203ENST00000378679 PRSS29PA6NIE9 313 aa10.67□□□□□ -0.7
SHROOM1-203ENST00000378679 IGLC6P0CF74 106 aa10.67□□□□□ -0.7
SHROOM1-203ENST00000378679 GAGE6Q13070 117 aa10.67□□□□□ -0.7
SHROOM1-203ENST00000378679 ZFAND2AQ8N6M9 145 aa10.67□□□□□ -0.7
SHROOM1-203ENST00000378679 RASL10AQ92737 203 aa10.67□□□□□ -0.7
SHROOM1-203ENST00000378679 H3BMM0 161 aa10.67□□□□□ -0.7
SHROOM1-203ENST00000378679 MORN3Q6PF18 240 aaPredicted RBP10.67□□□□□ -0.7
SHROOM1-203ENST00000378679 ZNF625Q96I27 306 aaPredicted RBP10.67□□□□□ -0.7
SHROOM1-203ENST00000378679 LINC00158P58513 81 aa10.66□□□□□ -0.7
SHROOM1-203ENST00000378679 PTH2Q96A98 100 aa10.66□□□□□ -0.7
SHROOM1-203ENST00000378679 SS18L2Q9UHA2 77 aa10.66□□□□□ -0.7
SHROOM1-203ENST00000378679 C12orf74Q32Q52 190 aa10.66□□□□□ -0.7
SHROOM1-203ENST00000378679 C6orf226Q5I0X4 101 aa10.66□□□□□ -0.7
SHROOM1-203ENST00000378679 C10orf126Q8N4M7 172 aa10.66□□□□□ -0.7
SHROOM1-203ENST00000378679 Q8N976 141 aa10.66□□□□□ -0.7
SHROOM1-203ENST00000378679 PRIMA1Q86XR5 153 aa10.65□□□□□ -0.7
SHROOM1-203ENST00000378679 RELNP78509 3460 aa10.65□□□□□ -0.7
SHROOM1-203ENST00000378679 PAX4O43316 350 aa10.65□□□□□ -0.7
SHROOM1-203ENST00000378679 MED14OSP0DP75 135 aa10.65□□□□□ -0.7
SHROOM1-203ENST00000378679 CEND1Q8N111 149 aa10.65□□□□□ -0.7
SHROOM1-203ENST00000378679 B5MCH6 92 aa10.65□□□□□ -0.71
SHROOM1-203ENST00000378679 ERG28Q9UKR5 140 aa10.65□□□□□ -0.71
SHROOM1-203ENST00000378679 A0A0J9YY99 117 aa10.64□□□□□ -0.71
SHROOM1-203ENST00000378679 RHOHQ15669 191 aa10.64□□□□□ -0.71
SHROOM1-203ENST00000378679 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.64□□□□□ -0.71
SHROOM1-203ENST00000378679 IGKV2-29A2NJV5 120 aaPredicted RBP10.64□□□□□ -0.71
SHROOM1-203ENST00000378679 TRAV26-1A0A087WT03 109 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 143 ms