RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 OXLD1Q5BKU9 147 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 C2orf66Q6UXQ4 117 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 SYT8Q8NBV8 401 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 MUC4Q99102 2169 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 IGHV1OR15-1A0A075B7D0 117 aa11.44□□□□□ -0.58
CCDC40-202ENST00000374876 SUMO4Q6EEV6 95 aa11.44□□□□□ -0.58
CCDC40-202ENST00000374876 C9orf85Q96MD7 179 aa11.44□□□□□ -0.58
CCDC40-202ENST00000374876 MDFICQ9P1T7 246 aa11.44□□□□□ -0.58
CCDC40-202ENST00000374876 F8VRH5 84 aa11.43□□□□□ -0.58
CCDC40-202ENST00000374876 Q8N1Y9 231 aa11.43□□□□□ -0.58
CCDC40-202ENST00000374876 G3V4G9 280 aa11.43□□□□□ -0.58
CCDC40-202ENST00000374876 NEGR1Q7Z3B1 354 aa11.43□□□□□ -0.58
CCDC40-202ENST00000374876 TTTY13Q9BZ97 58 aa11.43□□□□□ -0.58
CCDC40-202ENST00000374876 CHTOPQ9Y3Y2 248 aaKnown RBP11.43□□□□□ -0.58
CCDC40-202ENST00000374876 NBEAL1Q6ZS30 2694 aa11.43□□□□□ -0.58
CCDC40-202ENST00000374876 HLA-DRB4P13762 266 aa11.42□□□□□ -0.58
CCDC40-202ENST00000374876 RPL32P62910 135 aaKnown RBP11.42□□□□□ -0.58
CCDC40-202ENST00000374876 FAM74A4Q5TZK3 123 aa11.42□□□□□ -0.58
CCDC40-202ENST00000374876 OR4C5Q8NGB2 326 aa11.42□□□□□ -0.58
CCDC40-202ENST00000374876 HLA-DRB4X5D2U9 266 aa11.42□□□□□ -0.58
CCDC40-202ENST00000374876 NEXN-AS1Q8NBZ9 246 aa11.42□□□□□ -0.58
CCDC40-202ENST00000374876 HIGD1BQ9P298 99 aa11.42□□□□□ -0.58
CCDC40-202ENST00000374876 AMTNQ6UX39 209 aa11.41□□□□□ -0.58
CCDC40-202ENST00000374876 PEMTQ9UBM1 199 aa11.41□□□□□ -0.58
CCDC40-202ENST00000374876 VCYO14598 125 aa11.4□□□□□ -0.58
CCDC40-202ENST00000374876 AMMECR1LQ6DCA0 310 aa11.4□□□□□ -0.58
CCDC40-202ENST00000374876 BAALCQ8WXS3 180 aa11.4□□□□□ -0.58
CCDC40-202ENST00000374876 KIR2DL4Q99706 377 aa11.4□□□□□ -0.58
CCDC40-202ENST00000374876 CYSLTR1Q9Y271 337 aa11.4□□□□□ -0.58
CCDC40-202ENST00000374876 POLR2KP53803 58 aaKnown RBP11.4□□□□□ -0.59
CCDC40-202ENST00000374876 ZNF56Q15929 161 aa11.4□□□□□ -0.59
CCDC40-202ENST00000374876 CHAC1Q9BUX1 264 aa11.4□□□□□ -0.59
CCDC40-202ENST00000374876 TRGV11A0A075B6L2 103 aa11.39□□□□□ -0.59
CCDC40-202ENST00000374876 TRBV25-1A0A075B6N4 114 aa11.39□□□□□ -0.59
CCDC40-202ENST00000374876 TRAV8-6A0A0B4J262 113 aa11.39□□□□□ -0.59
CCDC40-202ENST00000374876 KNCNA6PVL3 124 aa11.39□□□□□ -0.59
CCDC40-202ENST00000374876 H3BRM9 83 aa11.39□□□□□ -0.59
CCDC40-202ENST00000374876 DEFB131AP59861 70 aa11.39□□□□□ -0.59
CCDC40-202ENST00000374876 SDHAF1A6NFY7 115 aa11.38□□□□□ -0.59
CCDC40-202ENST00000374876 LINC01549A6NIU2 74 aa11.38□□□□□ -0.59
CCDC40-202ENST00000374876 ZFP2Q6ZN57 461 aa11.38□□□□□ -0.59
CCDC40-202ENST00000374876 NOTCH1P46531 2555 aa11.38□□□□□ -0.59
CCDC40-202ENST00000374876 GCSHP23434 173 aa11.38□□□□□ -0.59
CCDC40-202ENST00000374876 ZNF876PQ49A33 203 aa11.38□□□□□ -0.59
CCDC40-202ENST00000374876 SAMD5Q5TGI4 173 aa11.38□□□□□ -0.59
CCDC40-202ENST00000374876 TP53TG1Q9Y2A0 90 aa11.38□□□□□ -0.59
CCDC40-202ENST00000374876 TRBV6-5A0A0K0K1A5 114 aa11.37□□□□□ -0.59
CCDC40-202ENST00000374876 PRSS29PA6NIE9 313 aa11.37□□□□□ -0.59
CCDC40-202ENST00000374876 CRYGDP07320 174 aa11.37□□□□□ -0.59
CCDC40-202ENST00000374876 AGRNO00468 2067 aa11.37□□□□□ -0.59
CCDC40-202ENST00000374876 TRAV2A0A0B4J234 112 aa11.36□□□□□ -0.59
CCDC40-202ENST00000374876 TRBV27A0A0K0K1C4 114 aa11.36□□□□□ -0.59
CCDC40-202ENST00000374876 C9orf118A6NHY6 69 aa11.36□□□□□ -0.59
CCDC40-202ENST00000374876 SAP30O75446 220 aa11.36□□□□□ -0.59
CCDC40-202ENST00000374876 TMEM61Q8N0U2 210 aa11.36□□□□□ -0.59
CCDC40-202ENST00000374876 DYNLRB2Q8TF09 96 aa11.36□□□□□ -0.59
CCDC40-202ENST00000374876 DEFB104AQ8WTQ1 72 aa11.36□□□□□ -0.59
CCDC40-202ENST00000374876 M0QY20 66 aa11.36□□□□□ -0.59
CCDC40-202ENST00000374876 MAPKAPK5-AS1Q8N8E1 139 aa11.36□□□□□ -0.59
CCDC40-202ENST00000374876 OR11H12B2RN74 326 aa11.35□□□□□ -0.59
CCDC40-202ENST00000374876 H3BMM0 161 aa11.35□□□□□ -0.59
CCDC40-202ENST00000374876 HTN1P15515 57 aa11.35□□□□□ -0.59
CCDC40-202ENST00000374876 OR11H2Q8NH07 326 aa11.35□□□□□ -0.59
CCDC40-202ENST00000374876 ZNF256Q9Y2P7 627 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-202ENST00000374876 PRB2P02812 416 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-202ENST00000374876 RBMY1A1P0DJD3 496 aaKnown RBP11.35□□□□□ -0.59
CCDC40-202ENST00000374876 RBMY1CP0DJD4 496 aa11.35□□□□□ -0.59
CCDC40-202ENST00000374876 RBMY1FQ15415 496 aaKnown RBP11.35□□□□□ -0.59
CCDC40-202ENST00000374876 C9orf66Q5T8R8 295 aa11.35□□□□□ -0.59
CCDC40-202ENST00000374876 TRPT1Q86TN4 253 aaKnown RBP11.35□□□□□ -0.59
CCDC40-202ENST00000374876 RAB37Q96AX2 223 aa11.35□□□□□ -0.59
CCDC40-202ENST00000374876 SORL1Q92673 2214 aa11.34□□□□□ -0.59
CCDC40-202ENST00000374876 IGIPA6NJ69 53 aa11.34□□□□□ -0.59
CCDC40-202ENST00000374876 BEAN1Q3B7T3 259 aa11.34□□□□□ -0.59
CCDC40-202ENST00000374876 TMEM141Q96I45 108 aa11.34□□□□□ -0.59
CCDC40-202ENST00000374876 H3BUT2 72 aa11.33□□□□□ -0.6
CCDC40-202ENST00000374876 SMIM13P0DJ93 91 aa11.33□□□□□ -0.6
CCDC40-202ENST00000374876 FXYD2P54710 66 aa11.33□□□□□ -0.6
CCDC40-202ENST00000374876 KRTAP10-11P60412 298 aa11.33□□□□□ -0.6
CCDC40-202ENST00000374876 RPL39P62891 51 aaKnown RBP11.33□□□□□ -0.6
CCDC40-202ENST00000374876 A8MTW9 85 aa11.33□□□□□ -0.6
CCDC40-202ENST00000374876 TSHBP01222 138 aa11.33□□□□□ -0.6
CCDC40-202ENST00000374876 MORN3Q6PF18 240 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-202ENST00000374876 CEND1Q8N111 149 aa11.33□□□□□ -0.6
CCDC40-202ENST00000374876 TIMM17AQ99595 171 aa11.33□□□□□ -0.6
CCDC40-202ENST00000374876 FBN3Q75N90 2809 aa11.32□□□□□ -0.6
CCDC40-202ENST00000374876 MYMXA0A1B0GTQ4 84 aa11.32□□□□□ -0.6
CCDC40-202ENST00000374876 GAGE10A6NGK3 116 aa11.32□□□□□ -0.6
CCDC40-202ENST00000374876 K7EP13 123 aa11.32□□□□□ -0.6
CCDC40-202ENST00000374876 PMVKQ15126 192 aa11.32□□□□□ -0.6
CCDC40-202ENST00000374876 MAP6D1Q9H9H5 199 aa11.32□□□□□ -0.6
CCDC40-202ENST00000374876 RBMY1BA6NDE4 496 aaKnown RBP11.31□□□□□ -0.6
CCDC40-202ENST00000374876 RBMY1EA6NEQ0 496 aaKnown RBP11.31□□□□□ -0.6
CCDC40-202ENST00000374876 E9PLD3 99 aa11.31□□□□□ -0.6
CCDC40-202ENST00000374876 RBMY1DP0C7P1 496 aaKnown RBP11.31□□□□□ -0.6
CCDC40-202ENST00000374876 DEFB114Q30KQ6 69 aa11.31□□□□□ -0.6
CCDC40-202ENST00000374876 TM2D2Q9BX73 214 aa11.31□□□□□ -0.6
CCDC40-202ENST00000374876 TAL2Q16559 108 aa11.31□□□□□ -0.6
CCDC40-202ENST00000374876 PAPPA-AS1Q5QFB9 102 aa11.31□□□□□ -0.6
CCDC40-202ENST00000374876 GTF2H5Q6ZYL4 71 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms