RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 CTRLP40313 264 aa11.9□□□□□ -0.5
COL5A1-201ENST00000371817 PTPRSQ13332 1948 aa11.9□□□□□ -0.5
COL5A1-201ENST00000371817 SMIM9A6NGZ8 99 aa11.9□□□□□ -0.5
COL5A1-201ENST00000371817 HRCT1Q6UXD1 115 aa11.9□□□□□ -0.5
COL5A1-201ENST00000371817 FAM19A3Q7Z5A8 133 aa11.89□□□□□ -0.51
COL5A1-201ENST00000371817 WDR90Q96KV7 1748 aa11.89□□□□□ -0.51
COL5A1-201ENST00000371817 C15orf65H3BRN8 121 aa11.89□□□□□ -0.51
COL5A1-201ENST00000371817 IGHV3-30-3P0DP02 117 aa11.89□□□□□ -0.51
COL5A1-201ENST00000371817 MBD3L4A6NDZ8 208 aaPredicted RBP11.88□□□□□ -0.51
COL5A1-201ENST00000371817 MBD3L3A6NE82 208 aaPredicted RBP11.88□□□□□ -0.51
COL5A1-201ENST00000371817 MBD3L5A6NJ08 208 aaPredicted RBP11.88□□□□□ -0.51
COL5A1-201ENST00000371817 VPREB1P12018 145 aa11.88□□□□□ -0.51
COL5A1-201ENST00000371817 C4orf48Q5BLP8 95 aa11.88□□□□□ -0.51
COL5A1-201ENST00000371817 MBD3L2Q8NHZ7 208 aaPredicted RBP11.88□□□□□ -0.51
COL5A1-201ENST00000371817 P0DMU3 169 aa11.88□□□□□ -0.51
COL5A1-201ENST00000371817 FAM231AP0DMU4 169 aa11.88□□□□□ -0.51
COL5A1-201ENST00000371817 FAM231CP0DMU5 169 aa11.88□□□□□ -0.51
COL5A1-201ENST00000371817 COL8A2P25067 703 aa11.88□□□□□ -0.51
COL5A1-201ENST00000371817 C2orf70A6NJV1 201 aa11.88□□□□□ -0.51
COL5A1-201ENST00000371817 NDUFA1O15239 70 aa11.88□□□□□ -0.51
COL5A1-201ENST00000371817 Q6ZR03 302 aa11.88□□□□□ -0.51
COL5A1-201ENST00000371817 BPESC1Q9GZL8 116 aa11.87□□□□□ -0.51
COL5A1-201ENST00000371817 A0A0G2JNJ9 132 aa11.87□□□□□ -0.51
COL5A1-201ENST00000371817 COX7BP24311 80 aa11.87□□□□□ -0.51
COL5A1-201ENST00000371817 Q9UFV3 132 aa11.87□□□□□ -0.51
COL5A1-201ENST00000371817 SERP1Q9Y6X1 66 aa11.87□□□□□ -0.51
COL5A1-201ENST00000371817 GP9P14770 177 aa11.86□□□□□ -0.51
COL5A1-201ENST00000371817 FHL1Q13642 323 aa11.86□□□□□ -0.51
COL5A1-201ENST00000371817 MSRB1Q9NZV6 116 aa11.86□□□□□ -0.51
COL5A1-201ENST00000371817 GYPEP15421 78 aa11.86□□□□□ -0.51
COL5A1-201ENST00000371817 Q8TCH9 128 aa11.86□□□□□ -0.51
COL5A1-201ENST00000371817 RUSC1-AS1Q66K80 236 aa11.85□□□□□ -0.51
COL5A1-201ENST00000371817 CSRP2Q16527 193 aa11.85□□□□□ -0.51
COL5A1-201ENST00000371817 LRP4O75096 1905 aa11.84□□□□□ -0.51
COL5A1-201ENST00000371817 NFE4Q86UQ8 179 aa11.84□□□□□ -0.51
COL5A1-201ENST00000371817 C16orf74Q96GX8 76 aa11.84□□□□□ -0.51
COL5A1-201ENST00000371817 A0A0J9YY99 117 aa11.83□□□□□ -0.52
COL5A1-201ENST00000371817 LY6HO94772 140 aa11.83□□□□□ -0.52
COL5A1-201ENST00000371817 WFDC10BQ8IUB3 73 aa11.83□□□□□ -0.52
COL5A1-201ENST00000371817 MDFICQ9P1T7 246 aa11.83□□□□□ -0.52
COL5A1-201ENST00000371817 H3BUA1 57 aa11.82□□□□□ -0.52
COL5A1-201ENST00000371817 SPRY2O43597 315 aa11.82□□□□□ -0.52
COL5A1-201ENST00000371817 B3GALT5-AS1P59052 145 aa11.82□□□□□ -0.52
COL5A1-201ENST00000371817 FAM19A5Q7Z5A7 132 aaPredicted RBP11.82□□□□□ -0.52
COL5A1-201ENST00000371817 TRBV27A0A0K0K1C4 114 aa11.82□□□□□ -0.52
COL5A1-201ENST00000371817 A0A0J9YXY3 114 aa11.82□□□□□ -0.52
COL5A1-201ENST00000371817 TRBV30A0A0K0K1B3 111 aa11.82□□□□□ -0.52
COL5A1-201ENST00000371817 TRIAP1O43715 76 aa11.82□□□□□ -0.52
COL5A1-201ENST00000371817 COL5A1P20908 1838 aaPredicted RBP11.82□□□□□ -0.52
COL5A1-201ENST00000371817 IGHV4-59P01825 116 aa11.81□□□□□ -0.52
COL5A1-201ENST00000371817 MSMBP08118 114 aa11.81□□□□□ -0.52
COL5A1-201ENST00000371817 ANKHD1Q8IWZ3 2542 aaKnown RBP11.81□□□□□ -0.52
COL5A1-201ENST00000371817 SCXQ7RTU7 201 aa11.81□□□□□ -0.52
COL5A1-201ENST00000371817 E7EQL1 145 aa11.81□□□□□ -0.52
COL5A1-201ENST00000371817 TTC28Q96AY4 2481 aa11.8□□□□□ -0.52
COL5A1-201ENST00000371817 Q6Q795 121 aa11.8□□□□□ -0.52
COL5A1-201ENST00000371817 FAM167A-AS1Q96KT0 104 aa11.8□□□□□ -0.52
COL5A1-201ENST00000371817 MED14OSP0DP75 135 aa11.8□□□□□ -0.52
COL5A1-201ENST00000371817 HOXB4P17483 251 aaPredicted RBP11.79□□□□□ -0.52
COL5A1-201ENST00000371817 SPAG11BQ08648 103 aa11.79□□□□□ -0.52
COL5A1-201ENST00000371817 WDR87Q6ZQQ6 2873 aa11.79□□□□□ -0.52
COL5A1-201ENST00000371817 MRPS12O15235 138 aaKnown RBP11.79□□□□□ -0.52
COL5A1-201ENST00000371817 PLA2G2EQ9NZK7 142 aa11.79□□□□□ -0.52
COL5A1-201ENST00000371817 CACNA1AO00555 2505 aa11.78□□□□□ -0.52
COL5A1-201ENST00000371817 ADAMTS20P59510 1910 aa11.78□□□□□ -0.52
COL5A1-201ENST00000371817 IGLV3-9A0A075B6K5 115 aa11.78□□□□□ -0.52
COL5A1-201ENST00000371817 XGP55808 180 aa11.78□□□□□ -0.52
COL5A1-201ENST00000371817 NPBQ8NG41 125 aa11.78□□□□□ -0.52
COL5A1-201ENST00000371817 HHLA3Q9XRX5 114 aa11.77□□□□□ -0.53
COL5A1-201ENST00000371817 CCDC168Q8NDH2 2452 aa11.77□□□□□ -0.53
COL5A1-201ENST00000371817 SPRY4Q9C004 299 aa11.77□□□□□ -0.53
COL5A1-201ENST00000371817 CSDC2Q9Y534 153 aaKnown RBP11.76□□□□□ -0.53
COL5A1-201ENST00000371817 ZFAND3Q9H8U3 227 aa11.76□□□□□ -0.53
COL5A1-201ENST00000371817 MIFP14174 115 aa11.76□□□□□ -0.53
COL5A1-201ENST00000371817 LOXP28300 417 aaPredicted RBP11.75□□□□□ -0.53
COL5A1-201ENST00000371817 MYO9AB2RTY4 2548 aa11.75□□□□□ -0.53
COL5A1-201ENST00000371817 TMEM263Q8WUH6 116 aaKnown RBP11.75□□□□□ -0.53
COL5A1-201ENST00000371817 DIAPH2-AS1Q14236 149 aa11.75□□□□□ -0.53
COL5A1-201ENST00000371817 CFAP126Q5VTH2 177 aa11.75□□□□□ -0.53
COL5A1-201ENST00000371817 A0A1B0GXF2 115 aa11.75□□□□□ -0.53
COL5A1-201ENST00000371817 B9D2Q9BPU9 175 aa11.75□□□□□ -0.53
COL5A1-201ENST00000371817 Q0VFX4 171 aa11.75□□□□□ -0.53
COL5A1-201ENST00000371817 Q6ZS92 163 aa11.75□□□□□ -0.53
COL5A1-201ENST00000371817 IGHV3-33P01772 117 aa11.74□□□□□ -0.53
COL5A1-201ENST00000371817 TRBV6-1A0A0K0K1D8 114 aa11.74□□□□□ -0.53
COL5A1-201ENST00000371817 FRMD6-AS1P0C7T7 363 aa11.74□□□□□ -0.53
COL5A1-201ENST00000371817 A0A0J9YWU9 116 aa11.74□□□□□ -0.53
COL5A1-201ENST00000371817 Q8N9L7 120 aa11.73□□□□□ -0.53
COL5A1-201ENST00000371817 ZMAT4Q9H898 229 aa11.73□□□□□ -0.53
COL5A1-201ENST00000371817 COL4A1P02462 1669 aa11.73□□□□□ -0.53
COL5A1-201ENST00000371817 IGLV3-1P01715 115 aa11.73□□□□□ -0.53
COL5A1-201ENST00000371817 C19orf71A6NCJ1 209 aa11.73□□□□□ -0.53
COL5A1-201ENST00000371817 C20orf203Q8NBC4 194 aa11.72□□□□□ -0.53
COL5A1-201ENST00000371817 I3L2K1 104 aa11.72□□□□□ -0.53
COL5A1-201ENST00000371817 TRAV7A0A075B6U4 112 aa11.72□□□□□ -0.53
COL5A1-201ENST00000371817 CCKP06307 115 aa11.72□□□□□ -0.53
COL5A1-201ENST00000371817 WT1P19544 449 aaPredicted RBP11.72□□□□□ -0.53
COL5A1-201ENST00000371817 K7EIM0 57 aa11.72□□□□□ -0.53
COL5A1-201ENST00000371817 SERTAD4-AS1Q5TG53 156 aa11.72□□□□□ -0.53
COL5A1-201ENST00000371817 SLPIP03973 132 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 116.6 ms