RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CD5LO43866 347 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 IGKV3-20P01619 116 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 HLA-DQA1P01909 254 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 PRM2P04554 102 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 NTF3P20783 257 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 DDTP30046 118 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 IFI27P40305 119 aaPredicted RBP1.64□□□□□ -2.15
VPS54-202ENST00000354504 DSCR9P59020 149 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 PKIAP61925 76 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 PRNTQ86SH4 94 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 AMN1Q8IY45 258 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 DEFB104AQ8WTQ1 72 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 USMG5Q96IX5 58 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 FAM218AQ96MZ4 157 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 FOXC2Q99958 501 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 NIT2Q9NQR4 276 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 THYN1Q9P016 225 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 TRAV2A0A0B4J234 112 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 LINC01547P58512 204 aaPredicted RBP1.64□□□□□ -2.15
VPS54-202ENST00000354504 MRPL52Q86TS9 123 aaKnown RBP1.64□□□□□ -2.15
VPS54-202ENST00000354504 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP1.64□□□□□ -2.15
VPS54-202ENST00000354504 OR4X2Q8NGF9 303 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 C4orf3Q8WVX3 66 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 RPL36ALQ969Q0 106 aaKnown RBP1.64□□□□□ -2.15
VPS54-202ENST00000354504 CHCHD1Q96BP2 118 aaKnown RBP1.64□□□□□ -2.15
VPS54-202ENST00000354504 PGLYRP4Q96LB8 373 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 UBE2E2Q96LR5 201 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 SMR3AQ99954 134 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 MS4A6AQ9H2W1 248 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 JPT2Q9H910 190 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 RABAC1Q9UI14 185 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 NAGKQ9UJ70 344 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 SMKR1H3BMG3 65 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 LGALS1P09382 135 aaKnown RBP1.63□□□□□ -2.15
VPS54-202ENST00000354504 PAFAH1B2P68402 229 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 PSG9Q00887 426 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 FAM162BQ5T6X4 162 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 BAGE3Q86Y29 109 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 TMEM86BQ8N661 226 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 STPG4Q8N801 248 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 PRAC1Q96KF2 57 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 DUX3Q96PT4 197 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 LITAFQ99732 161 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 SAMD10Q9BYL1 202 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 D6R8Y8 96 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 SYS1-DBNDD2H3BUS1 97 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 OVOL1O14753 267 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 GNRH2O43555 120 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 APCSP02743 223 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 VPREB1P12018 145 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 TCTAP57738 103 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 TPPP2P59282 170 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 KCNIP4Q6PIL6 250 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 C1orf158Q8N1D5 194 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 OR5A1Q8NGJ0 315 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 TRAV26-2A0A0B4J265 109 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 TRBV6-5A0A0K0K1A5 114 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 GATCO43716 136 aaKnown RBP1.63□□□□□ -2.15
VPS54-202ENST00000354504 ORM1P02763 201 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 HLA-DRB4P13762 266 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 TSPEAR-AS2P59090 65 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 NUTF2P61970 127 aaKnown RBP1.63□□□□□ -2.15
VPS54-202ENST00000354504 BOD1L2Q8IYS8 172 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 EEF1AKMT3Q96AZ1 226 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 SLC50A1Q9BRV3 221 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 MCRIP2Q9BUT9 160 aaKnown RBP1.63□□□□□ -2.15
VPS54-202ENST00000354504 MDFICQ9P1T7 246 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 HLA-DRB4X5D2U9 266 aa1.63□□□□□ -2.15
VPS54-202ENST00000354504 TRBV27A0A0K0K1C4 114 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 A0A1B0GUT8 65 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 A0A1B0GWB2 263 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 FBLL1A6NHQ2 334 aaKnown RBP1.62□□□□□ -2.15
VPS54-202ENST00000354504 M0QY20 66 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 LINC00614P0C842 121 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 RPL7P18124 248 aaKnown RBP1.62□□□□□ -2.15
VPS54-202ENST00000354504 PMCHP20382 165 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 EVI2AP22794 236 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 CSN1S1P47710 185 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 HIST1H1AQ02539 215 aaPredicted RBP1.62□□□□□ -2.15
VPS54-202ENST00000354504 DEFB114Q30KQ6 69 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 SMIM29Q86T20 159 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 TRPT1Q86TN4 253 aaKnown RBP1.62□□□□□ -2.15
VPS54-202ENST00000354504 SIGLECL1Q8N7X8 197 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 OR8A1Q8NGG7 326 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 LINC01006Q8NI28 216 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 TOMM6Q96B49 74 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 RPL39LQ96EH5 51 aaKnown RBP1.62□□□□□ -2.15
VPS54-202ENST00000354504 MIEN1Q9BRT3 115 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 PRO1933Q9H354 126 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 PEF1Q9UBV8 284 aaKnown RBP1.62□□□□□ -2.15
VPS54-202ENST00000354504 A0A1B0GW15 77 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 A8MWL6 223 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 H3BMM0 161 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 M0QZK8 103 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 M0R381 172 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 NDUFA7O95182 113 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 P01737 135 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 RNASE4P34096 147 aaKnown RBP1.62□□□□□ -2.15
VPS54-202ENST00000354504 ATP5G2Q06055 141 aa1.62□□□□□ -2.15
VPS54-202ENST00000354504 DEFB136Q30KP8 78 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms