RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TRBV7-3A0A075B6L6 115 aa15.25■□□□□ 0.03
SHMT1-203ENST00000354098 RAB4AP20338 218 aa15.25■□□□□ 0.03
SHMT1-203ENST00000354098 RPL36AP83881 106 aaKnown RBP15.25■□□□□ 0.03
SHMT1-203ENST00000354098 SH2D6Q7Z4S9 175 aa15.25■□□□□ 0.03
SHMT1-203ENST00000354098 RPL36ALQ969Q0 106 aaKnown RBP15.25■□□□□ 0.03
SHMT1-203ENST00000354098 URGCP-MRPS24S4R325 110 aa15.25■□□□□ 0.03
SHMT1-203ENST00000354098 H7C1H1 209 aa15.25■□□□□ 0.03
SHMT1-203ENST00000354098 GAS8-AS1O95177 125 aa15.25■□□□□ 0.03
SHMT1-203ENST00000354098 RASL11AQ6T310 242 aa15.25■□□□□ 0.03
SHMT1-203ENST00000354098 ATP5L2Q7Z4Y8 100 aa15.25■□□□□ 0.03
SHMT1-203ENST00000354098 BTF3L4Q96K17 158 aa15.25■□□□□ 0.03
SHMT1-203ENST00000354098 UBE2D3P61077 147 aa15.24■□□□□ 0.03
SHMT1-203ENST00000354098 UBE2D2P62837 147 aa15.24■□□□□ 0.03
SHMT1-203ENST00000354098 KCNIP4Q6PIL6 250 aa15.24■□□□□ 0.03
SHMT1-203ENST00000354098 ATRAIDQ6UW56 229 aa15.23■□□□□ 0.03
SHMT1-203ENST00000354098 FAM104BQ5XKR9 115 aa15.22■□□□□ 0.03
SHMT1-203ENST00000354098 RPL39LQ96EH5 51 aaKnown RBP15.22■□□□□ 0.03
SHMT1-203ENST00000354098 GTSF1LQ9H1H1 148 aa15.22■□□□□ 0.03
SHMT1-203ENST00000354098 NIT2Q9NQR4 276 aa15.22■□□□□ 0.03
SHMT1-203ENST00000354098 MRPS16Q9Y3D3 137 aaKnown RBP15.22■□□□□ 0.03
SHMT1-203ENST00000354098 DNAH1Q9P2D7 4330 aa15.22■□□□□ 0.03
SHMT1-203ENST00000354098 VPS13DQ5THJ4 4388 aa15.22■□□□□ 0.03
SHMT1-203ENST00000354098 S100A8P05109 93 aa15.22■□□□□ 0.03
SHMT1-203ENST00000354098 TNFRSF18Q9Y5U5 241 aa15.22■□□□□ 0.03
SHMT1-203ENST00000354098 IGHV3-38A0A0C4DH36 116 aa15.21■□□□□ 0.03
SHMT1-203ENST00000354098 S100PP25815 95 aa15.21■□□□□ 0.03
SHMT1-203ENST00000354098 SACSQ9NZJ4 4579 aa15.21■□□□□ 0.03
SHMT1-203ENST00000354098 SMKR1H3BMG3 65 aa15.2■□□□□ 0.02
SHMT1-203ENST00000354098 MRPL51Q4U2R6 128 aaKnown RBP15.2■□□□□ 0.02
SHMT1-203ENST00000354098 DNAJC30Q96LL9 226 aa15.2■□□□□ 0.02
SHMT1-203ENST00000354098 UPK3BQ9BT76 320 aa15.19■□□□□ 0.02
SHMT1-203ENST00000354098 NCR2O95944 276 aa15.19■□□□□ 0.02
SHMT1-203ENST00000354098 RPS10P46783 165 aaKnown RBP15.19■□□□□ 0.02
SHMT1-203ENST00000354098 TIRAPP58753 221 aa15.19■□□□□ 0.02
SHMT1-203ENST00000354098 MRAP2Q96G30 205 aa15.19■□□□□ 0.02
SHMT1-203ENST00000354098 TRAV9-1A0A075B6T8 112 aa15.18■□□□□ 0.02
SHMT1-203ENST00000354098 FRZBQ92765 325 aa15.18■□□□□ 0.02
SHMT1-203ENST00000354098 KMT2AQ03164 3969 aa15.17■□□□□ 0.02
SHMT1-203ENST00000354098 IGLV2-18A0A075B6J9 118 aa15.17■□□□□ 0.02
SHMT1-203ENST00000354098 Q9H8V8 135 aa15.17■□□□□ 0.02
SHMT1-203ENST00000354098 HYDINQ4G0P3 5121 aa15.17■□□□□ 0.02
SHMT1-203ENST00000354098 WFDC10BQ8IUB3 73 aa15.16■□□□□ 0.02
SHMT1-203ENST00000354098 OR10J3Q5JRS4 329 aa15.16■□□□□ 0.02
SHMT1-203ENST00000354098 LELP1Q5T871 98 aa15.16■□□□□ 0.02
SHMT1-203ENST00000354098 DEFB104AQ8WTQ1 72 aa15.16■□□□□ 0.02
SHMT1-203ENST00000354098 DAZ4Q86SG3 579 aaKnown RBP15.15■□□□□ 0.02
SHMT1-203ENST00000354098 DAZ3Q9NR90 486 aaKnown RBP15.15■□□□□ 0.02
SHMT1-203ENST00000354098 TMEM136Q6ZRR5 245 aa15.14■□□□□ 0.01
SHMT1-203ENST00000354098 NRACQ8N912 160 aa15.14■□□□□ 0.01
SHMT1-203ENST00000354098 TGIF2-C20orf24A0A0A6YYL0 155 aa15.13■□□□□ 0.01
SHMT1-203ENST00000354098 CKS2P33552 79 aa15.13■□□□□ 0.01
SHMT1-203ENST00000354098 ELOBQ15370 118 aa15.13■□□□□ 0.01
SHMT1-203ENST00000354098 NTM-AS1Q6ZSK4 140 aa15.13■□□□□ 0.01
SHMT1-203ENST00000354098 TRBV6-5A0A0K0K1A5 114 aa15.12■□□□□ 0.01
SHMT1-203ENST00000354098 D6R8Y8 96 aa15.12■□□□□ 0.01
SHMT1-203ENST00000354098 M0R2N4 97 aa15.12■□□□□ 0.01
SHMT1-203ENST00000354098 SIVA1O15304 175 aa15.12■□□□□ 0.01
SHMT1-203ENST00000354098 SDHAF1A6NFY7 115 aa15.12■□□□□ 0.01
SHMT1-203ENST00000354098 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.12■□□□□ 0.01
SHMT1-203ENST00000354098 RYR2Q92736 4967 aa15.12■□□□□ 0.01
SHMT1-203ENST00000354098 TRBV6-8A0A0A6YYG3 113 aa15.11■□□□□ 0.01
SHMT1-203ENST00000354098 TRAV8-6A0A0B4J262 113 aa15.11■□□□□ 0.01
SHMT1-203ENST00000354098 ST20Q9HBF5 79 aa15.11■□□□□ 0.01
SHMT1-203ENST00000354098 CBLN2Q8IUK8 224 aa15.1■□□□□ 0.01
SHMT1-203ENST00000354098 YPEL4Q96NS1 127 aa15.09■□□□□ 0.01
SHMT1-203ENST00000354098 TMEM70Q9BUB7 260 aa15.09■□□□□ 0.01
SHMT1-203ENST00000354098 RYR3Q15413 4870 aa15.09■□□□□ 0.01
SHMT1-203ENST00000354098 TNFRSF6BO95407 300 aa15.08■□□□□ 0
SHMT1-203ENST00000354098 POLR2KP53803 58 aaKnown RBP15.08■□□□□ 0
SHMT1-203ENST00000354098 GNB1LQ9BYB4 327 aa15.08■□□□□ 0
SHMT1-203ENST00000354098 KRTAP1-5Q9BYS1 174 aa15.08■□□□□ 0
SHMT1-203ENST00000354098 TRBV24-1A0A075B6N3 115 aa15.07■□□□□ 0
SHMT1-203ENST00000354098 NBDYA0A0U1RRE5 68 aa15.07■□□□□ 0
SHMT1-203ENST00000354098 PPP1R17O96001 155 aa15.07■□□□□ 0
SHMT1-203ENST00000354098 NPYP01303 97 aa15.07■□□□□ 0
SHMT1-203ENST00000354098 PPBPP02775 128 aa15.07■□□□□ 0
SHMT1-203ENST00000354098 ORMDL3Q8N138 153 aa15.07■□□□□ 0
SHMT1-203ENST00000354098 Q8N3U1 123 aa15.07■□□□□ 0
SHMT1-203ENST00000354098 DNAH10OSP0CZ25 163 aa15.06■□□□□ 0
SHMT1-203ENST00000354098 SUMO2P61956 95 aaKnown RBP15.06■□□□□ 0
SHMT1-203ENST00000354098 Q6ZR54 194 aa15.06■□□□□ 0
SHMT1-203ENST00000354098 SMCO4Q9NRQ5 59 aa15.06■□□□□ 0
SHMT1-203ENST00000354098 HLA-DQA1P01909 254 aa15.06■□□□□ 0
SHMT1-203ENST00000354098 COTL1Q14019 142 aa15.06■□□□□ 0
SHMT1-203ENST00000354098 KIAA1644Q3SXP7 199 aa15.06■□□□□ 0
SHMT1-203ENST00000354098 TMEM97Q5BJF2 176 aa15.06■□□□□ 0
SHMT1-203ENST00000354098 PRELID3AQ96N28 172 aa15.06■□□□□ 0
SHMT1-203ENST00000354098 I3L3M4 83 aa15.05■□□□□ -0
SHMT1-203ENST00000354098 APCSP02743 223 aa15.05■□□□□ -0
SHMT1-203ENST00000354098 PMCHP20382 165 aa15.05■□□□□ -0
SHMT1-203ENST00000354098 IGHV3-30P01768 117 aa15.04■□□□□ -0
SHMT1-203ENST00000354098 IGHV3-33P01772 117 aa15.04■□□□□ -0
SHMT1-203ENST00000354098 IGHV3-30-3P0DP02 117 aa15.04■□□□□ -0
SHMT1-203ENST00000354098 IGHV3-30-5P0DP03 117 aa15.04■□□□□ -0
SHMT1-203ENST00000354098 IQCJQ1A5X6 159 aa15.04■□□□□ -0
SHMT1-203ENST00000354098 TRBV25-1A0A075B6N4 114 aa15.03■□□□□ -0
SHMT1-203ENST00000354098 IGHV1-24A0A0C4DH33 117 aa15.03■□□□□ -0
SHMT1-203ENST00000354098 TRBV27A0A0K0K1C4 114 aa15.03■□□□□ -0
SHMT1-203ENST00000354098 COX19Q49B96 90 aa15.03■□□□□ -0
SHMT1-203ENST00000354098 LINC01556Q5JQF7 62 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms