RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 C11orf86A6NJI1 115 aa16.04■□□□□ 0.16
SHMT1-202ENST00000352886 TMEM61Q8N0U2 210 aa16.04■□□□□ 0.16
SHMT1-202ENST00000352886 PEMTQ9UBM1 199 aa16.04■□□□□ 0.16
SHMT1-202ENST00000352886 FABP2P12104 132 aa16.03■□□□□ 0.16
SHMT1-202ENST00000352886 C4orf3Q8WVX3 66 aa16.03■□□□□ 0.16
SHMT1-202ENST00000352886 HIST2H2BDQ6DRA6 164 aa16.03■□□□□ 0.16
SHMT1-202ENST00000352886 H3BMM0 161 aa16.02■□□□□ 0.16
SHMT1-202ENST00000352886 CD300EQ496F6 205 aaPredicted RBP16.02■□□□□ 0.16
SHMT1-202ENST00000352886 APCP25054 2843 aa16.02■□□□□ 0.15
SHMT1-202ENST00000352886 TLN2Q9Y4G6 2542 aa16.02■□□□□ 0.15
SHMT1-202ENST00000352886 TRBV7-3A0A075B6L6 115 aa16.02■□□□□ 0.15
SHMT1-202ENST00000352886 RBMY1BA6NDE4 496 aaKnown RBP16.01■□□□□ 0.15
SHMT1-202ENST00000352886 RBMY1EA6NEQ0 496 aaKnown RBP16.01■□□□□ 0.15
SHMT1-202ENST00000352886 RBMY1DP0C7P1 496 aaKnown RBP16.01■□□□□ 0.15
SHMT1-202ENST00000352886 DLX4Q92988 240 aaPredicted RBP16.01■□□□□ 0.15
SHMT1-202ENST00000352886 PAPPA-AS1Q5QFB9 102 aa16■□□□□ 0.15
SHMT1-202ENST00000352886 ZNF815PA8K554 130 aa16■□□□□ 0.15
SHMT1-202ENST00000352886 SCGB2A2Q13296 93 aa16■□□□□ 0.15
SHMT1-202ENST00000352886 KLHL30-AS1Q8NEE0 82 aa16■□□□□ 0.15
SHMT1-202ENST00000352886 NSUN5P1Q3KNT7 163 aa15.99■□□□□ 0.15
SHMT1-202ENST00000352886 A8MTW9 85 aa15.99■□□□□ 0.15
SHMT1-202ENST00000352886 PRM2P04554 102 aa15.98■□□□□ 0.15
SHMT1-202ENST00000352886 RHOHQ15669 191 aa15.98■□□□□ 0.15
SHMT1-202ENST00000352886 OR5A1Q8NGJ0 315 aa15.98■□□□□ 0.15
SHMT1-202ENST00000352886 DYNLRB2Q8TF09 96 aa15.98■□□□□ 0.15
SHMT1-202ENST00000352886 EPG5Q9HCE0 2579 aa15.98■□□□□ 0.15
SHMT1-202ENST00000352886 TRAV2A0A0B4J234 112 aa15.98■□□□□ 0.15
SHMT1-202ENST00000352886 C12orf74Q32Q52 190 aa15.98■□□□□ 0.15
SHMT1-202ENST00000352886 IGHV3-73A0A0B4J1V6 119 aa15.97■□□□□ 0.15
SHMT1-202ENST00000352886 P0DMU3 169 aa15.97■□□□□ 0.15
SHMT1-202ENST00000352886 FAM231AP0DMU4 169 aa15.97■□□□□ 0.15
SHMT1-202ENST00000352886 FAM231CP0DMU5 169 aa15.97■□□□□ 0.15
SHMT1-202ENST00000352886 HERVK_113P61574 105 aa15.97■□□□□ 0.15
SHMT1-202ENST00000352886 SCGB1D4Q6XE38 83 aa15.97■□□□□ 0.15
SHMT1-202ENST00000352886 MAP6D1Q9H9H5 199 aa15.97■□□□□ 0.15
SHMT1-202ENST00000352886 I3L3M4 83 aa15.96■□□□□ 0.15
SHMT1-202ENST00000352886 OPRPNQ99935 248 aaPredicted RBP15.96■□□□□ 0.15
SHMT1-202ENST00000352886 SVIPQ8NHG7 77 aa15.96■□□□□ 0.15
SHMT1-202ENST00000352886 ZNRF2Q8NHG8 242 aa15.96■□□□□ 0.15
SHMT1-202ENST00000352886 PLEKHB2Q96CS7 222 aa15.96■□□□□ 0.15
SHMT1-202ENST00000352886 NBPF19A0A087WUL8 3843 aa15.95■□□□□ 0.14
SHMT1-202ENST00000352886 TMEM170BQ5T4T1 132 aa15.95■□□□□ 0.14
SHMT1-202ENST00000352886 Q6ZSV7 163 aa15.95■□□□□ 0.14
SHMT1-202ENST00000352886 ITPR3Q14573 2671 aa15.95■□□□□ 0.14
SHMT1-202ENST00000352886 SONP18583 2426 aaKnown RBP15.95■□□□□ 0.14
SHMT1-202ENST00000352886 IGLL5B9A064 214 aa15.95■□□□□ 0.14
SHMT1-202ENST00000352886 C20orf203Q8NBC4 194 aa15.95■□□□□ 0.14
SHMT1-202ENST00000352886 DEFB114Q30KQ6 69 aa15.94■□□□□ 0.14
SHMT1-202ENST00000352886 WFDC11Q8NEX6 87 aa15.94■□□□□ 0.14
SHMT1-202ENST00000352886 NACAE9PAV3 2078 aa15.94■□□□□ 0.14
SHMT1-202ENST00000352886 PROK1P58294 105 aa15.94■□□□□ 0.14
SHMT1-202ENST00000352886 TMEM86BQ8N661 226 aa15.93■□□□□ 0.14
SHMT1-202ENST00000352886 SPAG8Q99932 426 aaPredicted RBP15.93■□□□□ 0.14
SHMT1-202ENST00000352886 AKAP9Q99996 3911 aa15.93■□□□□ 0.14
SHMT1-202ENST00000352886 M0R2P5 195 aa15.92■□□□□ 0.14
SHMT1-202ENST00000352886 ZNF479Q96JC4 524 aa15.92■□□□□ 0.14
SHMT1-202ENST00000352886 DNAJC9-AS1A6NH13 148 aa15.91■□□□□ 0.14
SHMT1-202ENST00000352886 ZNF415Q09FC8 603 aa15.91■□□□□ 0.14
SHMT1-202ENST00000352886 A0A1B0GWB2 263 aa15.9■□□□□ 0.14
SHMT1-202ENST00000352886 EDA2RQ9HAV5 297 aa15.9■□□□□ 0.14
SHMT1-202ENST00000352886 A8MWV9 139 aa15.9■□□□□ 0.14
SHMT1-202ENST00000352886 TSPEAR-AS2P59090 65 aa15.9■□□□□ 0.14
SHMT1-202ENST00000352886 SRSF9Q13242 221 aaKnown RBP eCLIP15.9■□□□□ 0.14
SHMT1-202ENST00000352886 C11orf44Q8N8P7 122 aa15.89■□□□□ 0.13
SHMT1-202ENST00000352886 RAX2Q96IS3 184 aa15.89■□□□□ 0.13
SHMT1-202ENST00000352886 LINC01587Q99440 93 aa15.89■□□□□ 0.13
SHMT1-202ENST00000352886 NFE4Q86UQ8 179 aa15.89■□□□□ 0.13
SHMT1-202ENST00000352886 CHD6Q8TD26 2715 aa15.89■□□□□ 0.13
SHMT1-202ENST00000352886 WNK1Q9H4A3 2382 aa15.88■□□□□ 0.13
SHMT1-202ENST00000352886 IGLV4-3A0A075B6K6 122 aa15.87■□□□□ 0.13
SHMT1-202ENST00000352886 A0A0J9YY99 117 aa15.87■□□□□ 0.13
SHMT1-202ENST00000352886 A0A1W2PRX2 142 aa15.87■□□□□ 0.13
SHMT1-202ENST00000352886 TNFRSF18Q9Y5U5 241 aa15.87■□□□□ 0.13
SHMT1-202ENST00000352886 RRN3P1Q2M238 152 aa15.87■□□□□ 0.13
SHMT1-202ENST00000352886 CUBNO60494 3623 aa15.86■□□□□ 0.13
SHMT1-202ENST00000352886 C11orf72Q8NBR9 251 aa15.86■□□□□ 0.13
SHMT1-202ENST00000352886 Q9UF83 564 aa15.86■□□□□ 0.13
SHMT1-202ENST00000352886 INSP01308 110 aa15.86■□□□□ 0.13
SHMT1-202ENST00000352886 PIK3CD-AS1Q5SR53 167 aa15.86■□□□□ 0.13
SHMT1-202ENST00000352886 HIST2H2BCQ6DN03 193 aa15.86■□□□□ 0.13
SHMT1-202ENST00000352886 TEX29Q8N6K0 151 aa15.86■□□□□ 0.13
SHMT1-202ENST00000352886 VCX2Q9H322 139 aa15.86■□□□□ 0.13
SHMT1-202ENST00000352886 ESM1Q9NQ30 184 aa15.86■□□□□ 0.13
SHMT1-202ENST00000352886 TMEM238LA0A1B0GVL6 79 aa15.85■□□□□ 0.13
SHMT1-202ENST00000352886 A6NJY4 79 aa15.85■□□□□ 0.13
SHMT1-202ENST00000352886 J3QQQ9 107 aa15.85■□□□□ 0.13
SHMT1-202ENST00000352886 CD28P10747 220 aa15.85■□□□□ 0.13
SHMT1-202ENST00000352886 AZU1P20160 251 aa15.85■□□□□ 0.13
SHMT1-202ENST00000352886 CFAP126Q5VTH2 177 aa15.85■□□□□ 0.13
SHMT1-202ENST00000352886 Q6ZSN1 163 aa15.85■□□□□ 0.13
SHMT1-202ENST00000352886 FLNAP21333 2647 aaKnown RBP15.85■□□□□ 0.13
SHMT1-202ENST00000352886 CLUHP3Q96NS8 147 aa15.85■□□□□ 0.13
SHMT1-202ENST00000352886 CCDC168Q8NDH2 2452 aa15.84■□□□□ 0.13
SHMT1-202ENST00000352886 NF1P21359 2839 aa15.84■□□□□ 0.13
SHMT1-202ENST00000352886 ODF3L2Q3SX64 289 aa15.84■□□□□ 0.13
SHMT1-202ENST00000352886 MRPL16Q9NX20 251 aaKnown RBP15.84■□□□□ 0.13
SHMT1-202ENST00000352886 SCGB1A1P11684 91 aa15.84■□□□□ 0.13
SHMT1-202ENST00000352886 LGALS3P17931 250 aaKnown RBP15.84■□□□□ 0.13
SHMT1-202ENST00000352886 RPL24P83731 157 aaKnown RBP15.84■□□□□ 0.13
SHMT1-202ENST00000352886 TEX48A0A1B0GUV7 120 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms