RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 SLC25A29Q8N8R3 303 aa16.26■□□□□ 0.19
SHMT1-201ENST00000316694 ZNF418Q8TF45 676 aaPredicted RBP16.26■□□□□ 0.19
SHMT1-201ENST00000316694 NSUN5P1Q3KNT7 163 aa16.25■□□□□ 0.19
SHMT1-201ENST00000316694 IGHV3-64A0A075B6Q5 118 aa16.25■□□□□ 0.19
SHMT1-201ENST00000316694 P0DMU3 169 aa16.25■□□□□ 0.19
SHMT1-201ENST00000316694 FAM231AP0DMU4 169 aa16.25■□□□□ 0.19
SHMT1-201ENST00000316694 FAM231CP0DMU5 169 aa16.25■□□□□ 0.19
SHMT1-201ENST00000316694 SMCPP49901 116 aaPredicted RBP16.25■□□□□ 0.19
SHMT1-201ENST00000316694 RHOHQ15669 191 aa16.24■□□□□ 0.19
SHMT1-201ENST00000316694 AMELXQ99217 191 aa16.24■□□□□ 0.19
SHMT1-201ENST00000316694 ZNF580Q9UK33 172 aa16.24■□□□□ 0.19
SHMT1-201ENST00000316694 CFC1BP0CG36 223 aa16.24■□□□□ 0.19
SHMT1-201ENST00000316694 CFC1P0CG37 223 aa16.24■□□□□ 0.19
SHMT1-201ENST00000316694 HTN1P15515 57 aa16.24■□□□□ 0.19
SHMT1-201ENST00000316694 UBE2D3P61077 147 aa16.24■□□□□ 0.19
SHMT1-201ENST00000316694 UBE2D2P62837 147 aa16.24■□□□□ 0.19
SHMT1-201ENST00000316694 SPATA25Q9BR10 227 aa16.24■□□□□ 0.19
SHMT1-201ENST00000316694 MAPK1IP1LQ8NDC0 245 aa16.23■□□□□ 0.19
SHMT1-201ENST00000316694 NFE4Q86UQ8 179 aa16.22■□□□□ 0.19
SHMT1-201ENST00000316694 ACACBO00763 2458 aa16.22■□□□□ 0.19
SHMT1-201ENST00000316694 ANKRD17O75179 2603 aaKnown RBP16.22■□□□□ 0.19
SHMT1-201ENST00000316694 I3L3M4 83 aa16.22■□□□□ 0.19
SHMT1-201ENST00000316694 C20orf203Q8NBC4 194 aa16.22■□□□□ 0.19
SHMT1-201ENST00000316694 C1QTNF4Q9BXJ3 329 aa16.22■□□□□ 0.19
SHMT1-201ENST00000316694 FBN2P35556 2912 aa16.21■□□□□ 0.19
SHMT1-201ENST00000316694 TGFAP01135 160 aa16.21■□□□□ 0.19
SHMT1-201ENST00000316694 IGHV3-73A0A0B4J1V6 119 aa16.21■□□□□ 0.18
SHMT1-201ENST00000316694 LYRM7Q5U5X0 104 aa16.21■□□□□ 0.18
SHMT1-201ENST00000316694 TMEM223A0PJW6 202 aa16.2■□□□□ 0.18
SHMT1-201ENST00000316694 FOXI1Q12951 378 aa16.2■□□□□ 0.18
SHMT1-201ENST00000316694 GATA3P23771 443 aa16.2■□□□□ 0.18
SHMT1-201ENST00000316694 PTH2Q96A98 100 aa16.2■□□□□ 0.18
SHMT1-201ENST00000316694 A0A0J9YXV3 536 aa16.19■□□□□ 0.18
SHMT1-201ENST00000316694 TCL1BO95988 128 aa16.19■□□□□ 0.18
SHMT1-201ENST00000316694 HOXD3P31249 432 aaPredicted RBP16.19■□□□□ 0.18
SHMT1-201ENST00000316694 C10orf126Q8N4M7 172 aa16.19■□□□□ 0.18
SHMT1-201ENST00000316694 FAM208BQ5VWN6 2430 aa16.19■□□□□ 0.18
SHMT1-201ENST00000316694 LEPROTO15243 131 aa16.19■□□□□ 0.18
SHMT1-201ENST00000316694 VCX2Q9H322 139 aa16.19■□□□□ 0.18
SHMT1-201ENST00000316694 MXRA5Q9NR99 2828 aa16.18■□□□□ 0.18
SHMT1-201ENST00000316694 TRGV11A0A075B6L2 103 aa16.18■□□□□ 0.18
SHMT1-201ENST00000316694 ZNF22P17026 224 aaPredicted RBP16.18■□□□□ 0.18
SHMT1-201ENST00000316694 PRO1854Q9UHT4 67 aa16.18■□□□□ 0.18
SHMT1-201ENST00000316694 ZFYVE26Q68DK2 2539 aa16.18■□□□□ 0.18
SHMT1-201ENST00000316694 TMEM89A2RUT3 159 aa16.18■□□□□ 0.18
SHMT1-201ENST00000316694 SCGB1C2P0DMR2 95 aa16.18■□□□□ 0.18
SHMT1-201ENST00000316694 IGLV4-3A0A075B6K6 122 aa16.17■□□□□ 0.18
SHMT1-201ENST00000316694 RHODO00212 210 aa16.17■□□□□ 0.18
SHMT1-201ENST00000316694 TRAV2A0A0B4J234 112 aa16.17■□□□□ 0.18
SHMT1-201ENST00000316694 KNCNA6PVL3 124 aa16.17■□□□□ 0.18
SHMT1-201ENST00000316694 RBMY1A1P0DJD3 496 aaKnown RBP16.17■□□□□ 0.18
SHMT1-201ENST00000316694 RBMY1CP0DJD4 496 aa16.17■□□□□ 0.18
SHMT1-201ENST00000316694 RBMY1FQ15415 496 aaKnown RBP16.17■□□□□ 0.18
SHMT1-201ENST00000316694 A4D1N5 150 aa16.16■□□□□ 0.18
SHMT1-201ENST00000316694 SCGB1A1P11684 91 aa16.16■□□□□ 0.18
SHMT1-201ENST00000316694 LINC01356Q8N9X3 169 aa16.16■□□□□ 0.18
SHMT1-201ENST00000316694 ATP6V0E2Q8NHE4 81 aa16.16■□□□□ 0.18
SHMT1-201ENST00000316694 RAX2Q96IS3 184 aa16.16■□□□□ 0.18
SHMT1-201ENST00000316694 PROK1P58294 105 aa16.15■□□□□ 0.18
SHMT1-201ENST00000316694 TCTEX1D4Q5JR98 221 aa16.14■□□□□ 0.18
SHMT1-201ENST00000316694 PRM2P04554 102 aa16.14■□□□□ 0.17
SHMT1-201ENST00000316694 TRBV20-1A0A075B6N2 111 aa16.13■□□□□ 0.17
SHMT1-201ENST00000316694 H7C2G1 150 aa16.13■□□□□ 0.17
SHMT1-201ENST00000316694 CD28P10747 220 aa16.13■□□□□ 0.17
SHMT1-201ENST00000316694 SPXQ9BT56 116 aa16.13■□□□□ 0.17
SHMT1-201ENST00000316694 DSCR9P59020 149 aa16.12■□□□□ 0.17
SHMT1-201ENST00000316694 DEFB136Q30KP8 78 aa16.12■□□□□ 0.17
SHMT1-201ENST00000316694 CEMP1Q6PRD7 247 aaPredicted RBP16.12■□□□□ 0.17
SHMT1-201ENST00000316694 MUSTN1Q8IVN3 82 aa16.12■□□□□ 0.17
SHMT1-201ENST00000316694 VPREB3Q9UKI3 123 aa16.12■□□□□ 0.17
SHMT1-201ENST00000316694 DEFB131AP59861 70 aa16.11■□□□□ 0.17
SHMT1-201ENST00000316694 RNASE13Q5GAN3 156 aaKnown RBP16.11■□□□□ 0.17
SHMT1-201ENST00000316694 LRRK2Q5S007 2527 aa16.11■□□□□ 0.17
SHMT1-201ENST00000316694 ADARB2-AS1A8MUL3 147 aa16.11■□□□□ 0.17
SHMT1-201ENST00000316694 EIF4EBP3O60516 100 aaPredicted RBP16.11■□□□□ 0.17
SHMT1-201ENST00000316694 ELANEP08246 267 aa16.11■□□□□ 0.17
SHMT1-201ENST00000316694 UBE2E2Q96LR5 201 aa16.11■□□□□ 0.17
SHMT1-201ENST00000316694 PRB1P04280 392 aa16.1■□□□□ 0.17
SHMT1-201ENST00000316694 SLURP1P55000 103 aa16.1■□□□□ 0.17
SHMT1-201ENST00000316694 TEN1Q86WV5 123 aa16.1■□□□□ 0.17
SHMT1-201ENST00000316694 A0A096LNT2 108 aa16.1■□□□□ 0.17
SHMT1-201ENST00000316694 ZNF462Q96JM2 2506 aa16.09■□□□□ 0.17
SHMT1-201ENST00000316694 A8MWV9 139 aa16.09■□□□□ 0.17
SHMT1-201ENST00000316694 C18orf65Q6ZTR6 163 aa16.09■□□□□ 0.17
SHMT1-201ENST00000316694 DUX3Q96PT4 197 aa16.09■□□□□ 0.17
SHMT1-201ENST00000316694 ZNF702PQ9H963 129 aa16.09■□□□□ 0.17
SHMT1-201ENST00000316694 TNFRSF18Q9Y5U5 241 aa16.09■□□□□ 0.17
SHMT1-201ENST00000316694 CARD19Q96LW7 228 aa16.09■□□□□ 0.17
SHMT1-201ENST00000316694 Q9UF83 564 aa16.09■□□□□ 0.17
SHMT1-201ENST00000316694 IGHV3-30-3P0DP02 117 aa16.08■□□□□ 0.17
SHMT1-201ENST00000316694 TMEM263Q8WUH6 116 aaKnown RBP16.08■□□□□ 0.17
SHMT1-201ENST00000316694 PPDPFLQ8WWR9 84 aa16.08■□□□□ 0.17
SHMT1-201ENST00000316694 TIMM21Q9BVV7 248 aa16.08■□□□□ 0.17
SHMT1-201ENST00000316694 BEX4Q9NWD9 120 aaPredicted RBP16.08■□□□□ 0.17
SHMT1-201ENST00000316694 IGHV3-33P01772 117 aa16.08■□□□□ 0.16
SHMT1-201ENST00000316694 CDIP1Q9H305 208 aa16.08■□□□□ 0.16
SHMT1-201ENST00000316694 FHL3Q13643 280 aa16.07■□□□□ 0.16
SHMT1-201ENST00000316694 RNF152Q8N8N0 203 aa16.07■□□□□ 0.16
SHMT1-201ENST00000316694 ERG28Q9UKR5 140 aa16.07■□□□□ 0.16
SHMT1-201ENST00000316694 PTPN13Q12923 2485 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms