RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 DEFB1P60022 68 aa11.41□□□□□ -0.58
SCN3B-201ENST00000299333 SPTAN1Q13813 2472 aaKnown RBP11.4□□□□□ -0.58
SCN3B-201ENST00000299333 SPAG11BQ08648 103 aa11.4□□□□□ -0.58
SCN3B-201ENST00000299333 ATP5EP2Q5VTU8 51 aa11.4□□□□□ -0.58
SCN3B-201ENST00000299333 VPREB3Q9UKI3 123 aa11.4□□□□□ -0.58
SCN3B-201ENST00000299333 SP5Q6BEB4 398 aaPredicted RBP11.4□□□□□ -0.58
SCN3B-201ENST00000299333 COX7BP24311 80 aa11.4□□□□□ -0.59
SCN3B-201ENST00000299333 C20orf203Q8NBC4 194 aa11.4□□□□□ -0.59
SCN3B-201ENST00000299333 C19orf71A6NCJ1 209 aa11.39□□□□□ -0.59
SCN3B-201ENST00000299333 RLFQ13129 1914 aa11.39□□□□□ -0.59
SCN3B-201ENST00000299333 CCL24O00175 119 aa11.39□□□□□ -0.59
SCN3B-201ENST00000299333 SERP1Q9Y6X1 66 aa11.39□□□□□ -0.59
SCN3B-201ENST00000299333 NACAE9PAV3 2078 aa11.39□□□□□ -0.59
SCN3B-201ENST00000299333 DEFB112Q30KQ8 113 aa11.39□□□□□ -0.59
SCN3B-201ENST00000299333 THADAQ6YHU6 1953 aa11.39□□□□□ -0.59
SCN3B-201ENST00000299333 PIK3CD-AS1Q5SR53 167 aa11.38□□□□□ -0.59
SCN3B-201ENST00000299333 J3QLI3 93 aa11.38□□□□□ -0.59
SCN3B-201ENST00000299333 SLPIP03973 132 aa11.38□□□□□ -0.59
SCN3B-201ENST00000299333 TNRC6BQ9UPQ9 1833 aaKnown RBP11.38□□□□□ -0.59
SCN3B-201ENST00000299333 VWA8A3KMH1 1905 aa11.37□□□□□ -0.59
SCN3B-201ENST00000299333 GDF5OSQ5U4N7 250 aa11.37□□□□□ -0.59
SCN3B-201ENST00000299333 HHLA3Q9XRX5 114 aa11.37□□□□□ -0.59
SCN3B-201ENST00000299333 PLXNA4Q9HCM2 1894 aa11.37□□□□□ -0.59
SCN3B-201ENST00000299333 A0A1B0GXF2 115 aa11.37□□□□□ -0.59
SCN3B-201ENST00000299333 MRPS12O15235 138 aaKnown RBP11.37□□□□□ -0.59
SCN3B-201ENST00000299333 IMUPQ9GZP8 106 aa11.37□□□□□ -0.59
SCN3B-201ENST00000299333 THSD7BQ9C0I4 1608 aa11.36□□□□□ -0.59
SCN3B-201ENST00000299333 MED14OSP0DP75 135 aa11.36□□□□□ -0.59
SCN3B-201ENST00000299333 TM2D2Q9BX73 214 aa11.36□□□□□ -0.59
SCN3B-201ENST00000299333 A0A0J9YWU9 116 aa11.36□□□□□ -0.59
SCN3B-201ENST00000299333 PLA2G5P39877 138 aa11.36□□□□□ -0.59
SCN3B-201ENST00000299333 MDFICQ9P1T7 246 aa11.36□□□□□ -0.59
SCN3B-201ENST00000299333 LOC107984640A0A0U1RRK4 108 aa11.36□□□□□ -0.59
SCN3B-201ENST00000299333 OXLD1Q5BKU9 147 aa11.36□□□□□ -0.59
SCN3B-201ENST00000299333 FAM215AQ9Y5M1 114 aa11.35□□□□□ -0.59
SCN3B-201ENST00000299333 NANOS2P60321 138 aaKnown RBP11.35□□□□□ -0.59
SCN3B-201ENST00000299333 CACNA1BQ00975 2339 aa11.34□□□□□ -0.59
SCN3B-201ENST00000299333 E7EUB6 86 aa11.34□□□□□ -0.59
SCN3B-201ENST00000299333 TRIAP1O43715 76 aa11.34□□□□□ -0.59
SCN3B-201ENST00000299333 SPART-AS1P0CW21 52 aa11.34□□□□□ -0.59
SCN3B-201ENST00000299333 LINC00322Q6ZN03 302 aaPredicted RBP11.34□□□□□ -0.59
SCN3B-201ENST00000299333 CREBBPQ92793 2442 aa11.34□□□□□ -0.59
SCN3B-201ENST00000299333 FAM19A3Q7Z5A8 133 aa11.33□□□□□ -0.59
SCN3B-201ENST00000299333 PRO0628Q9UI54 55 aa11.33□□□□□ -0.59
SCN3B-201ENST00000299333 KLK12Q9UKR0 248 aa11.33□□□□□ -0.59
SCN3B-201ENST00000299333 SHANK1Q9Y566 2161 aa11.33□□□□□ -0.6
SCN3B-201ENST00000299333 TRBV6-1A0A0K0K1D8 114 aa11.33□□□□□ -0.6
SCN3B-201ENST00000299333 PPDPFQ9H3Y8 114 aa11.33□□□□□ -0.6
SCN3B-201ENST00000299333 Q6Q795 121 aa11.33□□□□□ -0.6
SCN3B-201ENST00000299333 ZFAND3Q9H8U3 227 aa11.33□□□□□ -0.6
SCN3B-201ENST00000299333 MAPKAPK5-AS1Q8N8E1 139 aa11.33□□□□□ -0.6
SCN3B-201ENST00000299333 IGLV2-14P01704 120 aa11.33□□□□□ -0.6
SCN3B-201ENST00000299333 MRPS36P82909 103 aaKnown RBP11.32□□□□□ -0.6
SCN3B-201ENST00000299333 CNOT1A5YKK6 2376 aaKnown RBP11.32□□□□□ -0.6
SCN3B-201ENST00000299333 ZMAT4Q9H898 229 aa11.32□□□□□ -0.6
SCN3B-201ENST00000299333 COL6A6A6NMZ7 2263 aa11.32□□□□□ -0.6
SCN3B-201ENST00000299333 TMEM263Q8WUH6 116 aaKnown RBP11.32□□□□□ -0.6
SCN3B-201ENST00000299333 PLXNA2O75051 1894 aa11.32□□□□□ -0.6
SCN3B-201ENST00000299333 IGLV2-8P01709 118 aa11.32□□□□□ -0.6
SCN3B-201ENST00000299333 PSPHP1O15172 72 aa11.31□□□□□ -0.6
SCN3B-201ENST00000299333 P0DMU3 169 aa11.31□□□□□ -0.6
SCN3B-201ENST00000299333 FAM231AP0DMU4 169 aa11.31□□□□□ -0.6
SCN3B-201ENST00000299333 FAM231CP0DMU5 169 aa11.31□□□□□ -0.6
SCN3B-201ENST00000299333 ZNF80P51504 273 aaPredicted RBP11.31□□□□□ -0.6
SCN3B-201ENST00000299333 WFDC10BQ8IUB3 73 aa11.31□□□□□ -0.6
SCN3B-201ENST00000299333 FNDC1Q4ZHG4 1894 aaPredicted RBP11.31□□□□□ -0.6
SCN3B-201ENST00000299333 CCL18P55774 89 aa11.31□□□□□ -0.6
SCN3B-201ENST00000299333 NEXN-AS1Q8NBZ9 246 aa11.31□□□□□ -0.6
SCN3B-201ENST00000299333 PCNX2A6NKB5 2137 aa11.31□□□□□ -0.6
SCN3B-201ENST00000299333 IGHV4-38-2P0DP08 117 aa11.3□□□□□ -0.6
SCN3B-201ENST00000299333 C11orf1Q9H5F2 150 aa11.3□□□□□ -0.6
SCN3B-201ENST00000299333 WT1P19544 449 aaPredicted RBP11.3□□□□□ -0.6
SCN3B-201ENST00000299333 DEFB4AO15263 64 aa11.3□□□□□ -0.6
SCN3B-201ENST00000299333 INSL3P51460 131 aa11.3□□□□□ -0.6
SCN3B-201ENST00000299333 Q8N9W7 124 aa11.3□□□□□ -0.6
SCN3B-201ENST00000299333 NLRC5Q86WI3 1866 aa11.29□□□□□ -0.6
SCN3B-201ENST00000299333 IGFL3Q6UXB1 125 aa11.29□□□□□ -0.6
SCN3B-201ENST00000299333 LY6G6EA0A0G2JKS1 128 aa11.28□□□□□ -0.6
SCN3B-201ENST00000299333 SIRPDQ9H106 197 aa11.28□□□□□ -0.6
SCN3B-201ENST00000299333 U3KQA8 63 aa11.28□□□□□ -0.6
SCN3B-201ENST00000299333 C4orf48Q5BLP8 95 aa11.28□□□□□ -0.6
SCN3B-201ENST00000299333 F8W735 103 aaPredicted RBP11.28□□□□□ -0.6
SCN3B-201ENST00000299333 K7ENP7 123 aa11.28□□□□□ -0.6
SCN3B-201ENST00000299333 KRTAP27-1Q3LI81 207 aa11.28□□□□□ -0.6
SCN3B-201ENST00000299333 A0A096LNI7 61 aa11.27□□□□□ -0.6
SCN3B-201ENST00000299333 TRBV30A0A0K0K1B3 111 aa11.27□□□□□ -0.6
SCN3B-201ENST00000299333 MIFP14174 115 aa11.27□□□□□ -0.61
SCN3B-201ENST00000299333 NRGNQ92686 78 aa11.27□□□□□ -0.61
SCN3B-201ENST00000299333 PLCE1Q9P212 2302 aa11.27□□□□□ -0.61
SCN3B-201ENST00000299333 TMEM223A0PJW6 202 aa11.27□□□□□ -0.61
SCN3B-201ENST00000299333 C5orf56Q8N8D9 126 aa11.27□□□□□ -0.61
SCN3B-201ENST00000299333 TP53TG3Q9ULZ0 132 aa11.27□□□□□ -0.61
SCN3B-201ENST00000299333 KLK5Q9Y337 293 aaPredicted RBP11.27□□□□□ -0.61
SCN3B-201ENST00000299333 LINC00308Q8TCZ7 52 aa11.26□□□□□ -0.61
SCN3B-201ENST00000299333 CDKN2A-AS1Q9UH64 79 aa11.26□□□□□ -0.61
SCN3B-201ENST00000299333 DENND4AQ7Z401 1863 aa11.26□□□□□ -0.61
SCN3B-201ENST00000299333 ODF3L1Q8IXM7 274 aa11.26□□□□□ -0.61
SCN3B-201ENST00000299333 TCF20Q9UGU0 1960 aaKnown RBP11.26□□□□□ -0.61
SCN3B-201ENST00000299333 HIGD2AQ9BW72 106 aa11.26□□□□□ -0.61
SCN3B-201ENST00000299333 GRNP28799 593 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms