RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ZNF292O60281 2723 aa11.77□□□□□ -0.52
SHH-201ENST00000297261 BAALC-AS2P0C853 105 aa11.77□□□□□ -0.52
SHH-201ENST00000297261 FANCD2OSQ96PS1 177 aa11.77□□□□□ -0.53
SHH-201ENST00000297261 CELSR3Q9NYQ7 3312 aa11.77□□□□□ -0.53
SHH-201ENST00000297261 NAV2Q8IVL1 2488 aa11.77□□□□□ -0.53
SHH-201ENST00000297261 OPRPNQ99935 248 aaPredicted RBP11.76□□□□□ -0.53
SHH-201ENST00000297261 Q9H8V8 135 aa11.76□□□□□ -0.53
SHH-201ENST00000297261 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.76□□□□□ -0.53
SHH-201ENST00000297261 IGKV2-29A2NJV5 120 aaPredicted RBP11.76□□□□□ -0.53
SHH-201ENST00000297261 TRACP01848 142 aa11.76□□□□□ -0.53
SHH-201ENST00000297261 HERV-K104P63124 156 aa11.76□□□□□ -0.53
SHH-201ENST00000297261 ZFYVE26Q68DK2 2539 aa11.76□□□□□ -0.53
SHH-201ENST00000297261 IGLC6P0CF74 106 aa11.76□□□□□ -0.53
SHH-201ENST00000297261 C11orf71Q6IPW1 123 aa11.76□□□□□ -0.53
SHH-201ENST00000297261 AGRNO00468 2067 aa11.76□□□□□ -0.53
SHH-201ENST00000297261 ICOSQ9Y6W8 199 aa11.76□□□□□ -0.53
SHH-201ENST00000297261 CLEC2BQ92478 149 aa11.75□□□□□ -0.53
SHH-201ENST00000297261 C10orf105Q8TEF2 133 aa11.75□□□□□ -0.53
SHH-201ENST00000297261 OVOL2Q9BRP0 275 aa11.75□□□□□ -0.53
SHH-201ENST00000297261 DNAJC30Q96LL9 226 aa11.75□□□□□ -0.53
SHH-201ENST00000297261 CENPVL3A0A0U1RRI6 287 aa11.74□□□□□ -0.53
SHH-201ENST00000297261 HOXD3P31249 432 aaPredicted RBP11.74□□□□□ -0.53
SHH-201ENST00000297261 RHOHQ15669 191 aa11.74□□□□□ -0.53
SHH-201ENST00000297261 MRPL53Q96EL3 112 aaKnown RBP11.74□□□□□ -0.53
SHH-201ENST00000297261 RHODO00212 210 aa11.74□□□□□ -0.53
SHH-201ENST00000297261 Q8N1Y9 231 aa11.74□□□□□ -0.53
SHH-201ENST00000297261 GATA3P23771 443 aa11.74□□□□□ -0.53
SHH-201ENST00000297261 MRPL23Q16540 153 aaKnown RBP11.74□□□□□ -0.53
SHH-201ENST00000297261 UFSP1Q6NVU6 142 aa11.74□□□□□ -0.53
SHH-201ENST00000297261 IGLV2-11P01706 119 aa11.74□□□□□ -0.53
SHH-201ENST00000297261 IGHV7-4-1A0A0J9YVY3 117 aa11.73□□□□□ -0.53
SHH-201ENST00000297261 NXPH4O95158 308 aa11.73□□□□□ -0.53
SHH-201ENST00000297261 GAS8-AS1O95177 125 aa11.73□□□□□ -0.53
SHH-201ENST00000297261 NPBQ8NG41 125 aa11.73□□□□□ -0.53
SHH-201ENST00000297261 TRBV10-2A0A0K0K1G8 114 aa11.73□□□□□ -0.53
SHH-201ENST00000297261 IGHV4-38-2P0DP08 117 aa11.73□□□□□ -0.53
SHH-201ENST00000297261 NDUFV3P56181 108 aaKnown RBP11.73□□□□□ -0.53
SHH-201ENST00000297261 Q96MF0 132 aa11.73□□□□□ -0.53
SHH-201ENST00000297261 TMEM126AQ9H061 195 aa11.73□□□□□ -0.53
SHH-201ENST00000297261 SIRPDQ9H106 197 aa11.73□□□□□ -0.53
SHH-201ENST00000297261 TEX49A0A1B0GTD5 131 aa11.72□□□□□ -0.53
SHH-201ENST00000297261 INSP01308 110 aa11.72□□□□□ -0.53
SHH-201ENST00000297261 LMO4P61968 165 aa11.72□□□□□ -0.53
SHH-201ENST00000297261 PKD1L2Q7Z442 2459 aa11.72□□□□□ -0.53
SHH-201ENST00000297261 USP9XQ93008 2570 aaPredicted RBP11.72□□□□□ -0.53
SHH-201ENST00000297261 HAMPP81172 84 aa11.72□□□□□ -0.53
SHH-201ENST00000297261 CFHR3Q02985 330 aa11.72□□□□□ -0.53
SHH-201ENST00000297261 MGAQ8IWI9 3026 aa11.72□□□□□ -0.53
SHH-201ENST00000297261 FSTL3O95633 263 aa11.72□□□□□ -0.53
SHH-201ENST00000297261 USP9YO00507 2555 aaPredicted RBP11.71□□□□□ -0.53
SHH-201ENST00000297261 IGKV3D-7A0A0C4DH55 119 aa11.7□□□□□ -0.54
SHH-201ENST00000297261 TNFRSF13BO14836 293 aaPredicted RBP11.7□□□□□ -0.54
SHH-201ENST00000297261 C9orf47Q6ZRZ4 202 aa11.7□□□□□ -0.54
SHH-201ENST00000297261 Q8N9W7 124 aa11.7□□□□□ -0.54
SHH-201ENST00000297261 PIFOQ8TCI5 191 aa11.7□□□□□ -0.54
SHH-201ENST00000297261 RPL35AP18077 110 aaKnown RBP11.7□□□□□ -0.54
SHH-201ENST00000297261 XGP55808 180 aa11.69□□□□□ -0.54
SHH-201ENST00000297261 RNF185Q96GF1 192 aa11.69□□□□□ -0.54
SHH-201ENST00000297261 TIMM17AQ99595 171 aa11.69□□□□□ -0.54
SHH-201ENST00000297261 UBL5Q9BZL1 73 aa11.69□□□□□ -0.54
SHH-201ENST00000297261 A0A1W2PPR1 153 aa11.68□□□□□ -0.54
SHH-201ENST00000297261 ODF3BA8MYP8 253 aa11.68□□□□□ -0.54
SHH-201ENST00000297261 HERVK_113P63121 156 aa11.68□□□□□ -0.54
SHH-201ENST00000297261 PF4P02776 101 aa11.68□□□□□ -0.54
SHH-201ENST00000297261 ACYP1P07311 99 aa11.68□□□□□ -0.54
SHH-201ENST00000297261 DEFB130BP0DP73 79 aa11.68□□□□□ -0.54
SHH-201ENST00000297261 DEFB130AP0DP74 79 aa11.68□□□□□ -0.54
SHH-201ENST00000297261 A0A0J9YY99 117 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 J3QKU1 62 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 C16orf54Q6UWD8 224 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 Q71RC1 249 aaPredicted RBP11.67□□□□□ -0.54
SHH-201ENST00000297261 COL27A1Q8IZC6 1860 aaPredicted RBP11.67□□□□□ -0.54
SHH-201ENST00000297261 U3KQK5 164 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 TRAV13-2A0A0B4J235 113 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 SPATA25Q9BR10 227 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 A0A1B0GX51 115 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 H3BT86 120 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 LGALS9O00182 355 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 IGF1P05019 195 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 NEXN-AS1Q8NBZ9 246 aa11.67□□□□□ -0.54
SHH-201ENST00000297261 GHRHP01286 108 aa11.66□□□□□ -0.54
SHH-201ENST00000297261 USP34Q70CQ2 3546 aa11.66□□□□□ -0.54
SHH-201ENST00000297261 IGHV3-30-3P0DP02 117 aa11.66□□□□□ -0.54
SHH-201ENST00000297261 DEFB112Q30KQ8 113 aa11.66□□□□□ -0.54
SHH-201ENST00000297261 CEMP1Q6PRD7 247 aaPredicted RBP11.66□□□□□ -0.54
SHH-201ENST00000297261 SPANXDQ9BXN6 97 aa11.66□□□□□ -0.54
SHH-201ENST00000297261 IGHV4-59P01825 116 aa11.65□□□□□ -0.54
SHH-201ENST00000297261 CFAP126Q5VTH2 177 aa11.65□□□□□ -0.54
SHH-201ENST00000297261 SLC25A29Q8N8R3 303 aa11.65□□□□□ -0.54
SHH-201ENST00000297261 LY6LH3BQJ8 138 aa11.65□□□□□ -0.54
SHH-201ENST00000297261 BLCAPP62952 87 aa11.64□□□□□ -0.55
SHH-201ENST00000297261 UNQ9165/PRO28630Q6UXU0 137 aa11.64□□□□□ -0.55
SHH-201ENST00000297261 AJUBAQ96IF1 538 aa11.64□□□□□ -0.55
SHH-201ENST00000297261 TMEM243Q9BU79 118 aa11.64□□□□□ -0.55
SHH-201ENST00000297261 SRSF2Q01130 221 aaKnown RBP11.64□□□□□ -0.55
SHH-201ENST00000297261 HHLA3Q9XRX5 114 aa11.64□□□□□ -0.55
SHH-201ENST00000297261 J3QLI3 93 aa11.64□□□□□ -0.55
SHH-201ENST00000297261 MDFICQ9P1T7 246 aa11.64□□□□□ -0.55
SHH-201ENST00000297261 LRRK2Q5S007 2527 aa11.63□□□□□ -0.55
SHH-201ENST00000297261 DEFB113Q30KQ7 82 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms