RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 HOXA3O43365 443 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-201ENST00000253024 CFHR3Q02985 330 aa15.79■□□□□ 0.12
TRIM28-201ENST00000253024 MORN3Q6PF18 240 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-201ENST00000253024 FOXI2Q6ZQN5 318 aa15.79■□□□□ 0.12
TRIM28-201ENST00000253024 NOTCH2Q04721 2471 aa15.79■□□□□ 0.12
TRIM28-201ENST00000253024 A0A0J9YX75 114 aa15.79■□□□□ 0.12
TRIM28-201ENST00000253024 RBMY1A1P0DJD3 496 aaKnown RBP15.78■□□□□ 0.12
TRIM28-201ENST00000253024 RBMY1CP0DJD4 496 aa15.78■□□□□ 0.12
TRIM28-201ENST00000253024 DEFB131AP59861 70 aa15.78■□□□□ 0.12
TRIM28-201ENST00000253024 RBMY1FQ15415 496 aaKnown RBP15.78■□□□□ 0.12
TRIM28-201ENST00000253024 PSMB2P49721 201 aa15.78■□□□□ 0.12
TRIM28-201ENST00000253024 PTH2Q96A98 100 aa15.78■□□□□ 0.12
TRIM28-201ENST00000253024 IGHV3OR16-12A0A075B7B8 117 aa15.78■□□□□ 0.12
TRIM28-201ENST00000253024 POLR2KP53803 58 aaKnown RBP15.78■□□□□ 0.12
TRIM28-201ENST00000253024 IGHV3-38A0A0C4DH36 116 aa15.77■□□□□ 0.12
TRIM28-201ENST00000253024 VCYO14598 125 aa15.77■□□□□ 0.12
TRIM28-201ENST00000253024 RRN3P1Q2M238 152 aa15.77■□□□□ 0.12
TRIM28-201ENST00000253024 TCTEX1D4Q5JR98 221 aa15.77■□□□□ 0.12
TRIM28-201ENST00000253024 ITPR3Q14573 2671 aa15.77■□□□□ 0.11
TRIM28-201ENST00000253024 IGIPA6NJ69 53 aa15.77■□□□□ 0.11
TRIM28-201ENST00000253024 APRG1Q8IVJ8 170 aa15.77■□□□□ 0.11
TRIM28-201ENST00000253024 APCP25054 2843 aa15.76■□□□□ 0.11
TRIM28-201ENST00000253024 NDUFS8O00217 210 aa15.76■□□□□ 0.11
TRIM28-201ENST00000253024 IGHV1OR15-1A0A075B7D0 117 aa15.76■□□□□ 0.11
TRIM28-201ENST00000253024 A0A1B0GWB2 263 aa15.76■□□□□ 0.11
TRIM28-201ENST00000253024 H3BUA1 57 aa15.76■□□□□ 0.11
TRIM28-201ENST00000253024 NPC2P61916 151 aa15.76■□□□□ 0.11
TRIM28-201ENST00000253024 SMAGPQ0VAQ4 97 aa15.76■□□□□ 0.11
TRIM28-201ENST00000253024 PMVKQ15126 192 aa15.76■□□□□ 0.11
TRIM28-201ENST00000253024 TSSC4Q9Y5U2 329 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-201ENST00000253024 RAX2Q96IS3 184 aa15.75■□□□□ 0.11
TRIM28-201ENST00000253024 A0A0J9YXV3 536 aa15.75■□□□□ 0.11
TRIM28-201ENST00000253024 A0A1W2PRX2 142 aa15.74■□□□□ 0.11
TRIM28-201ENST00000253024 A8MZ25 164 aa15.74■□□□□ 0.11
TRIM28-201ENST00000253024 M0QY20 66 aa15.74■□□□□ 0.11
TRIM28-201ENST00000253024 GAGE13Q4V321 117 aa15.74■□□□□ 0.11
TRIM28-201ENST00000253024 K7EQG2 157 aa15.73■□□□□ 0.11
TRIM28-201ENST00000253024 SPXQ9BT56 116 aa15.73■□□□□ 0.11
TRIM28-201ENST00000253024 ATP6V0BQ99437 205 aa15.72■□□□□ 0.11
TRIM28-201ENST00000253024 TRAV2A0A0B4J234 112 aa15.72■□□□□ 0.11
TRIM28-201ENST00000253024 LINC01356Q8N9X3 169 aa15.72■□□□□ 0.11
TRIM28-201ENST00000253024 COX6B1P14854 86 aa15.71■□□□□ 0.11
TRIM28-201ENST00000253024 SPANXB1Q9NS25 103 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-201ENST00000253024 A0A0J9YY99 117 aa15.7■□□□□ 0.1
TRIM28-201ENST00000253024 K7EMT4 169 aa15.7■□□□□ 0.1
TRIM28-201ENST00000253024 TSPAN13O95857 204 aa15.7■□□□□ 0.1
TRIM28-201ENST00000253024 HERVK_113P61574 105 aa15.7■□□□□ 0.1
TRIM28-201ENST00000253024 SYT8Q8NBV8 401 aa15.7■□□□□ 0.1
TRIM28-201ENST00000253024 SPAG8Q99932 426 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-201ENST00000253024 TRAV8-3A0A0A6YYJ7 113 aa15.69■□□□□ 0.1
TRIM28-201ENST00000253024 LGALS3P17931 250 aaKnown RBP15.69■□□□□ 0.1
TRIM28-201ENST00000253024 PPP1R17O96001 155 aa15.69■□□□□ 0.1
TRIM28-201ENST00000253024 MED14OSP0DP75 135 aa15.69■□□□□ 0.1
TRIM28-201ENST00000253024 C9orf85Q96MD7 179 aa15.69■□□□□ 0.1
TRIM28-201ENST00000253024 J3QQQ9 107 aa15.68■□□□□ 0.1
TRIM28-201ENST00000253024 NXPH4O95158 308 aa15.68■□□□□ 0.1
TRIM28-201ENST00000253024 SCGB1C2P0DMR2 95 aa15.68■□□□□ 0.1
TRIM28-201ENST00000253024 Q6ZSN1 163 aa15.68■□□□□ 0.1
TRIM28-201ENST00000253024 NBEAL2Q6ZNJ1 2754 aa15.68■□□□□ 0.1
TRIM28-201ENST00000253024 TMEM61Q8N0U2 210 aa15.68■□□□□ 0.1
TRIM28-201ENST00000253024 SETXQ7Z333 2677 aaKnown RBP15.68■□□□□ 0.1
TRIM28-201ENST00000253024 HIST2H2BCQ6DN03 193 aa15.67■□□□□ 0.1
TRIM28-201ENST00000253024 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-201ENST00000253024 IGKV2-29A2NJV5 120 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-201ENST00000253024 TAL2Q16559 108 aa15.67■□□□□ 0.1
TRIM28-201ENST00000253024 BBC3Q96PG8 261 aaPredicted RBP15.66■□□□□ 0.1
TRIM28-201ENST00000253024 VPREB3Q9UKI3 123 aa15.66■□□□□ 0.1
TRIM28-201ENST00000253024 TRBV27A0A0K0K1C4 114 aa15.66■□□□□ 0.1
TRIM28-201ENST00000253024 UBE2E2Q96LR5 201 aa15.66■□□□□ 0.1
TRIM28-201ENST00000253024 ZNF702PQ9H963 129 aa15.66■□□□□ 0.1
TRIM28-201ENST00000253024 RBMY1BA6NDE4 496 aaKnown RBP15.66■□□□□ 0.1
TRIM28-201ENST00000253024 RBMY1EA6NEQ0 496 aaKnown RBP15.66■□□□□ 0.1
TRIM28-201ENST00000253024 LGALS9O00182 355 aa15.66■□□□□ 0.1
TRIM28-201ENST00000253024 PRSS2P07478 247 aa15.66■□□□□ 0.1
TRIM28-201ENST00000253024 RBMY1DP0C7P1 496 aaKnown RBP15.66■□□□□ 0.1
TRIM28-201ENST00000253024 VCX2Q9H322 139 aa15.66■□□□□ 0.1
TRIM28-201ENST00000253024 AZU1P20160 251 aa15.65■□□□□ 0.1
TRIM28-201ENST00000253024 CD28P10747 220 aa15.65■□□□□ 0.1
TRIM28-201ENST00000253024 A0A0U1RRA0 63 aa15.64■□□□□ 0.09
TRIM28-201ENST00000253024 XCL2Q9UBD3 114 aa15.64■□□□□ 0.09
TRIM28-201ENST00000253024 CFC1BP0CG36 223 aa15.63■□□□□ 0.09
TRIM28-201ENST00000253024 CFC1P0CG37 223 aa15.63■□□□□ 0.09
TRIM28-201ENST00000253024 IGHV3-53P01767 116 aa15.63■□□□□ 0.09
TRIM28-201ENST00000253024 F8W1H4 67 aa15.63■□□□□ 0.09
TRIM28-201ENST00000253024 TRPT1Q86TN4 253 aaKnown RBP15.63■□□□□ 0.09
TRIM28-201ENST00000253024 LINC01587Q99440 93 aa15.63■□□□□ 0.09
TRIM28-201ENST00000253024 A4D1N5 150 aa15.62■□□□□ 0.09
TRIM28-201ENST00000253024 SMCPP49901 116 aaPredicted RBP15.62■□□□□ 0.09
TRIM28-201ENST00000253024 NDUFA11Q86Y39 141 aa15.62■□□□□ 0.09
TRIM28-201ENST00000253024 Q6ZSV7 163 aa15.62■□□□□ 0.09
TRIM28-201ENST00000253024 C20orf203Q8NBC4 194 aa15.62■□□□□ 0.09
TRIM28-201ENST00000253024 ITPR2Q14571 2701 aa15.62■□□□□ 0.09
TRIM28-201ENST00000253024 TMEM238LA0A1B0GVL6 79 aa15.61■□□□□ 0.09
TRIM28-201ENST00000253024 A6NJY4 79 aa15.61■□□□□ 0.09
TRIM28-201ENST00000253024 I3L3M4 83 aa15.61■□□□□ 0.09
TRIM28-201ENST00000253024 Q1RN00 199 aa15.61■□□□□ 0.09
TRIM28-201ENST00000253024 DAND5Q8N907 189 aa15.61■□□□□ 0.09
TRIM28-201ENST00000253024 DLX4Q92988 240 aaPredicted RBP15.61■□□□□ 0.09
TRIM28-201ENST00000253024 IGLV4-3A0A075B6K6 122 aa15.61■□□□□ 0.09
TRIM28-201ENST00000253024 GAGE12HA6NDE8 117 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms