RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 NDUFAF3Q9BU61 184 aa13.66□□□□□ -0.22
CLN3-258ENST00000637184 TP53TG1Q9Y2A0 90 aa13.66□□□□□ -0.22
CLN3-258ENST00000637184 A0A087WWL8 130 aa13.66□□□□□ -0.22
CLN3-258ENST00000637184 A8MWV9 139 aa13.66□□□□□ -0.22
CLN3-258ENST00000637184 MIFP14174 115 aa13.66□□□□□ -0.22
CLN3-258ENST00000637184 OVOL2Q9BRP0 275 aa13.66□□□□□ -0.22
CLN3-258ENST00000637184 KIF25-AS1Q9Y6Z4 181 aa13.66□□□□□ -0.22
CLN3-258ENST00000637184 SRIP30626 198 aa13.65□□□□□ -0.22
CLN3-258ENST00000637184 FAM74A4Q5TZK3 123 aa13.65□□□□□ -0.22
CLN3-258ENST00000637184 MGPP08493 103 aa13.64□□□□□ -0.23
CLN3-258ENST00000637184 CKS2P33552 79 aa13.64□□□□□ -0.23
CLN3-258ENST00000637184 Q6ZTI0 123 aa13.64□□□□□ -0.23
CLN3-258ENST00000637184 SAMD10Q9BYL1 202 aa13.64□□□□□ -0.23
CLN3-258ENST00000637184 IGHV4-28A0A0C4DH34 117 aa13.63□□□□□ -0.23
CLN3-258ENST00000637184 D6R8Y8 96 aa13.63□□□□□ -0.23
CLN3-258ENST00000637184 CRYGDP07320 174 aa13.63□□□□□ -0.23
CLN3-258ENST00000637184 ORMDL3Q8N138 153 aa13.63□□□□□ -0.23
CLN3-258ENST00000637184 ALKBH7Q9BT30 221 aaPredicted RBP13.63□□□□□ -0.23
CLN3-258ENST00000637184 SBSPONQ8IVN8 264 aa13.63□□□□□ -0.23
CLN3-258ENST00000637184 PPBPP02775 128 aa13.62□□□□□ -0.23
CLN3-258ENST00000637184 LINC00315P59091 139 aa13.62□□□□□ -0.23
CLN3-258ENST00000637184 Q8NAQ8 132 aa13.62□□□□□ -0.23
CLN3-258ENST00000637184 RETNQ9HD89 108 aa13.62□□□□□ -0.23
CLN3-258ENST00000637184 U3KQK5 164 aa13.62□□□□□ -0.23
CLN3-258ENST00000637184 CFAP126Q5VTH2 177 aa13.61□□□□□ -0.23
CLN3-258ENST00000637184 MRAP2Q96G30 205 aa13.61□□□□□ -0.23
CLN3-258ENST00000637184 TRAV26-2A0A0B4J265 109 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 GAGE12BA1L429 117 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 F5H697 171 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 SMKR1H3BMG3 65 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 RS1O15537 224 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 GAGE7O76087 117 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 NCR2O95944 276 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 GAGE12FP0CL80 117 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 GAGE12GP0CL81 117 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 GAGE12IP0CL82 117 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 ZNF56Q15929 161 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 POM121L12Q8N7R1 296 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 PRELID3AQ96N28 172 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 NACAE9PAV3 2078 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 DEFB4AO15263 64 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 S100A6P06703 90 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 OR4C5Q8NGB2 326 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 MRAPQ8TCY5 172 aa13.6□□□□□ -0.23
CLN3-258ENST00000637184 TRGV2A0A075B6R0 118 aa13.59□□□□□ -0.23
CLN3-258ENST00000637184 RHODO00212 210 aa13.59□□□□□ -0.23
CLN3-258ENST00000637184 IGHV3-73A0A0B4J1V6 119 aa13.58□□□□□ -0.23
CLN3-258ENST00000637184 LYRM9A8MSI8 78 aa13.58□□□□□ -0.23
CLN3-258ENST00000637184 NDUFA6P56556 154 aa13.58□□□□□ -0.23
CLN3-258ENST00000637184 TRAV4A0A0B4J268 109 aa13.58□□□□□ -0.24
CLN3-258ENST00000637184 GAS8-AS1O95177 125 aa13.58□□□□□ -0.24
CLN3-258ENST00000637184 GATA1P15976 413 aaPredicted RBP13.58□□□□□ -0.24
CLN3-258ENST00000637184 OR10J3Q5JRS4 329 aa13.58□□□□□ -0.24
CLN3-258ENST00000637184 FAM222AQ5U5X8 452 aa13.58□□□□□ -0.24
CLN3-258ENST00000637184 SUMO4Q6EEV6 95 aa13.58□□□□□ -0.24
CLN3-258ENST00000637184 UFSP1Q6NVU6 142 aa13.58□□□□□ -0.24
CLN3-258ENST00000637184 C18orf32Q8TCD1 76 aa13.58□□□□□ -0.24
CLN3-258ENST00000637184 DEFB130BP0DP73 79 aa13.57□□□□□ -0.24
CLN3-258ENST00000637184 DEFB130AP0DP74 79 aa13.57□□□□□ -0.24
CLN3-258ENST00000637184 Q0VG73 95 aa13.57□□□□□ -0.24
CLN3-258ENST00000637184 ZFP2Q6ZN57 461 aa13.57□□□□□ -0.24
CLN3-258ENST00000637184 SPATA25Q9BR10 227 aa13.57□□□□□ -0.24
CLN3-258ENST00000637184 LAMTOR2Q9Y2Q5 125 aa13.57□□□□□ -0.24
CLN3-258ENST00000637184 NPYP01303 97 aa13.56□□□□□ -0.24
CLN3-258ENST00000637184 LINC00612Q8N6U2 182 aa13.56□□□□□ -0.24
CLN3-258ENST00000637184 DKK2Q9UBU2 259 aa13.56□□□□□ -0.24
CLN3-258ENST00000637184 TNFRSF6BO95407 300 aa13.55□□□□□ -0.24
CLN3-258ENST00000637184 IQCJQ1A5X6 159 aa13.55□□□□□ -0.24
CLN3-258ENST00000637184 BAGE3Q86Y29 109 aa13.55□□□□□ -0.24
CLN3-258ENST00000637184 ZNF479Q96JC4 524 aa13.55□□□□□ -0.24
CLN3-258ENST00000637184 IGHV3-53P01767 116 aa13.55□□□□□ -0.24
CLN3-258ENST00000637184 NRACQ8N912 160 aa13.55□□□□□ -0.24
CLN3-258ENST00000637184 TM2D3Q9BRN9 247 aa13.55□□□□□ -0.24
CLN3-258ENST00000637184 PPP1R17O96001 155 aa13.54□□□□□ -0.24
CLN3-258ENST00000637184 C18orf15Q96N68 181 aa13.54□□□□□ -0.24
CLN3-258ENST00000637184 M0QY20 66 aa13.53□□□□□ -0.24
CLN3-258ENST00000637184 CIDEAO60543 219 aa13.53□□□□□ -0.24
CLN3-258ENST00000637184 SPART-AS1P0CW21 52 aa13.53□□□□□ -0.24
CLN3-258ENST00000637184 H7C1H1 209 aa13.53□□□□□ -0.24
CLN3-258ENST00000637184 COA6Q5JTJ3 125 aaKnown RBP13.53□□□□□ -0.24
CLN3-258ENST00000637184 RPL39LQ96EH5 51 aaKnown RBP13.53□□□□□ -0.24
CLN3-258ENST00000637184 MAP1LC3AQ9H492 121 aa13.53□□□□□ -0.24
CLN3-258ENST00000637184 LOC389332A0A1B0GUA5 103 aa13.52□□□□□ -0.25
CLN3-258ENST00000637184 SNRPEP62304 92 aaKnown RBP13.52□□□□□ -0.25
CLN3-258ENST00000637184 CELA1Q9UNI1 258 aa13.52□□□□□ -0.25
CLN3-258ENST00000637184 TEX48A0A1B0GUV7 120 aa13.51□□□□□ -0.25
CLN3-258ENST00000637184 DAD1P61803 113 aa13.51□□□□□ -0.25
CLN3-258ENST00000637184 Q6ZSN1 163 aa13.51□□□□□ -0.25
CLN3-258ENST00000637184 C11orf68Q9H3H3 251 aaKnown RBP13.51□□□□□ -0.25
CLN3-258ENST00000637184 EDA2RQ9HAV5 297 aa13.51□□□□□ -0.25
CLN3-258ENST00000637184 PRSS3P2Q8NHM4 247 aa13.5□□□□□ -0.25
CLN3-258ENST00000637184 ZMAT4Q9H898 229 aa13.5□□□□□ -0.25
CLN3-258ENST00000637184 TRGV4A0A0C4DH28 118 aa13.5□□□□□ -0.25
CLN3-258ENST00000637184 C5orf52A6NGY3 159 aa13.5□□□□□ -0.25
CLN3-258ENST00000637184 SERF1AO75920 110 aa13.5□□□□□ -0.25
CLN3-258ENST00000637184 NIT1Q86X76 327 aa13.5□□□□□ -0.25
CLN3-258ENST00000637184 C20orf78Q9BR46 151 aa13.5□□□□□ -0.25
CLN3-258ENST00000637184 NIT2Q9NQR4 276 aa13.5□□□□□ -0.25
CLN3-258ENST00000637184 SUMO2P61956 95 aaKnown RBP13.49□□□□□ -0.25
CLN3-258ENST00000637184 PRSS47A8MTI9 375 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms