RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TPPP3Q9BW30 176 aa14.24□□□□□ -0.13
CLN3-240ENST00000631023 LY96Q9Y6Y9 160 aa14.24□□□□□ -0.13
CLN3-240ENST00000631023 MUC21A0A0G2JKD1 596 aa14.23□□□□□ -0.13
CLN3-240ENST00000631023 MUC21A0A140T8X8 626 aa14.23□□□□□ -0.13
CLN3-240ENST00000631023 F2Z2F3 143 aa14.23□□□□□ -0.13
CLN3-240ENST00000631023 K7EN84 100 aa14.23□□□□□ -0.13
CLN3-240ENST00000631023 A0A1W2PPQ1 181 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 ZNF727A8MUV8 499 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 SIVA1O15304 175 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 IGLC6P0CF74 106 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 SSTP61278 116 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 PEA15Q15121 130 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 C1orf134Q5TEV5 83 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 LINC00336Q6ZUF6 198 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 RNASE7Q9H1E1 156 aaKnown RBP14.22□□□□□ -0.13
CLN3-240ENST00000631023 TIRAPP58753 221 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 CACNG7P62955 275 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 SMDT1Q9H4I9 107 aa14.22□□□□□ -0.13
CLN3-240ENST00000631023 RPP21Q9H633 154 aaKnown RBP14.22□□□□□ -0.13
CLN3-240ENST00000631023 SMIM17P0DL12 118 aa14.21□□□□□ -0.14
CLN3-240ENST00000631023 RAB14P61106 215 aa14.2□□□□□ -0.14
CLN3-240ENST00000631023 FAM74A3Q4VXF1 159 aa14.2□□□□□ -0.14
CLN3-240ENST00000631023 C14orf178Q8N769 122 aaPredicted RBP14.2□□□□□ -0.14
CLN3-240ENST00000631023 ATP6V0E2Q8NHE4 81 aa14.2□□□□□ -0.14
CLN3-240ENST00000631023 FRAS1Q86XX4 4008 aa14.19□□□□□ -0.14
CLN3-240ENST00000631023 RAB4BP61018 213 aa14.19□□□□□ -0.14
CLN3-240ENST00000631023 FAM231DQ6ZW35 169 aa14.19□□□□□ -0.14
CLN3-240ENST00000631023 AP1S3Q96PC3 154 aa14.19□□□□□ -0.14
CLN3-240ENST00000631023 DNAH10Q8IVF4 4471 aa14.19□□□□□ -0.14
CLN3-240ENST00000631023 GAGE12JA6NER3 117 aa14.18□□□□□ -0.14
CLN3-240ENST00000631023 ERVFC1-1P60608 527 aa14.18□□□□□ -0.14
CLN3-240ENST00000631023 GAGE1Q13065 139 aa14.18□□□□□ -0.14
CLN3-240ENST00000631023 GAGE4Q13068 117 aa14.18□□□□□ -0.14
CLN3-240ENST00000631023 GAGE5Q13069 117 aa14.18□□□□□ -0.14
CLN3-240ENST00000631023 GAGE13Q4V321 117 aa14.18□□□□□ -0.14
CLN3-240ENST00000631023 GTSF1LQ9H1H1 148 aa14.18□□□□□ -0.14
CLN3-240ENST00000631023 TRBV10-1A0A0K0K1A3 114 aa14.17□□□□□ -0.14
CLN3-240ENST00000631023 GATCO43716 136 aaKnown RBP14.17□□□□□ -0.14
CLN3-240ENST00000631023 ZNF56Q15929 161 aa14.17□□□□□ -0.14
CLN3-240ENST00000631023 LYZL1Q6UWQ5 148 aa14.17□□□□□ -0.14
CLN3-240ENST00000631023 TRAV9-2A0A087WT02 112 aa14.17□□□□□ -0.14
CLN3-240ENST00000631023 RTL8CO15255 209 aa14.17□□□□□ -0.14
CLN3-240ENST00000631023 WDR73Q6P4I2 378 aa14.17□□□□□ -0.14
CLN3-240ENST00000631023 LINC01551Q86U37 167 aa14.17□□□□□ -0.14
CLN3-240ENST00000631023 C6orf223Q8N319 242 aa14.17□□□□□ -0.14
CLN3-240ENST00000631023 A8MWL6 223 aa14.16□□□□□ -0.14
CLN3-240ENST00000631023 F5H697 171 aa14.16□□□□□ -0.14
CLN3-240ENST00000631023 TMEM241Q24JQ0 296 aa14.16□□□□□ -0.14
CLN3-240ENST00000631023 TRAV8-6A0A0B4J262 113 aa14.15□□□□□ -0.14
CLN3-240ENST00000631023 BTF3P20290 206 aaKnown RBP14.15□□□□□ -0.14
CLN3-240ENST00000631023 CTRLP40313 264 aa14.15□□□□□ -0.14
CLN3-240ENST00000631023 RPL36AP83881 106 aaKnown RBP14.15□□□□□ -0.14
CLN3-240ENST00000631023 RPL36ALQ969Q0 106 aaKnown RBP14.15□□□□□ -0.14
CLN3-240ENST00000631023 Q9UF83 564 aa14.15□□□□□ -0.14
CLN3-240ENST00000631023 K7EP13 123 aa14.14□□□□□ -0.15
CLN3-240ENST00000631023 TRGC1P0CF51 173 aa14.14□□□□□ -0.15
CLN3-240ENST00000631023 LINC00694P0DN24 101 aa14.14□□□□□ -0.15
CLN3-240ENST00000631023 LELP1Q5T871 98 aa14.14□□□□□ -0.15
CLN3-240ENST00000631023 WFDC10BQ8IUB3 73 aa14.14□□□□□ -0.15
CLN3-240ENST00000631023 PRSS29PA6NIE9 313 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 C9JQL5 133 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 NTF3P20783 257 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 EVI2AP22794 236 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 SRSF3P84103 164 aaKnown RBP14.13□□□□□ -0.15
CLN3-240ENST00000631023 CT83Q5H943 113 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 OR10J3Q5JRS4 329 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 KRTAP1-5Q9BYS1 174 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 MSRB1Q9NZV6 116 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 TRBV7-3A0A075B6L6 115 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 C15orf54Q8N8G6 183 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 CNFNQ9BYD5 112 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 OSTCQ9NRP0 149 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 KIF25-AS1Q9Y6Z4 181 aa14.13□□□□□ -0.15
CLN3-240ENST00000631023 A0A087WWC5 75 aa14.12□□□□□ -0.15
CLN3-240ENST00000631023 DNAH10OSP0CZ25 163 aa14.12□□□□□ -0.15
CLN3-240ENST00000631023 TWIST1Q15672 202 aa14.12□□□□□ -0.15
CLN3-240ENST00000631023 NAT8Q9UHE5 227 aa14.12□□□□□ -0.15
CLN3-240ENST00000631023 IGHV3-38A0A0C4DH36 116 aa14.11□□□□□ -0.15
CLN3-240ENST00000631023 GTSF1Q8WW33 167 aa14.11□□□□□ -0.15
CLN3-240ENST00000631023 DNAH2Q9P225 4427 aa14.1□□□□□ -0.15
CLN3-240ENST00000631023 MGPP08493 103 aa14.1□□□□□ -0.15
CLN3-240ENST00000631023 LINC00315P59091 139 aa14.1□□□□□ -0.15
CLN3-240ENST00000631023 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.1□□□□□ -0.15
CLN3-240ENST00000631023 OR10G8Q8NGN5 311 aa14.1□□□□□ -0.15
CLN3-240ENST00000631023 EPPK1P58107 5090 aaKnown RBP14.1□□□□□ -0.15
CLN3-240ENST00000631023 DPH3P1Q9H4G8 78 aa14.09□□□□□ -0.15
CLN3-240ENST00000631023 H7C1H1 209 aa14.09□□□□□ -0.15
CLN3-240ENST00000631023 FOXA3P55318 350 aaPredicted RBP14.09□□□□□ -0.15
CLN3-240ENST00000631023 RPL23P62829 140 aaKnown RBP14.09□□□□□ -0.15
CLN3-240ENST00000631023 ADIRFQ15847 76 aa14.09□□□□□ -0.15
CLN3-240ENST00000631023 SMIM15Q7Z3B0 74 aa14.09□□□□□ -0.15
CLN3-240ENST00000631023 C10orf126Q8N4M7 172 aa14.09□□□□□ -0.15
CLN3-240ENST00000631023 ISOC2Q96AB3 205 aa14.09□□□□□ -0.15
CLN3-240ENST00000631023 GFRA4Q9GZZ7 299 aa14.09□□□□□ -0.15
CLN3-240ENST00000631023 UBE2D3P61077 147 aa14.08□□□□□ -0.16
CLN3-240ENST00000631023 UBE2D2P62837 147 aa14.08□□□□□ -0.16
CLN3-240ENST00000631023 LINC01556Q5JQF7 62 aa14.08□□□□□ -0.16
CLN3-240ENST00000631023 NEXN-AS1Q8NBZ9 246 aa14.08□□□□□ -0.16
CLN3-240ENST00000631023 TSKUQ8WUA8 353 aa14.08□□□□□ -0.16
CLN3-240ENST00000631023 BORCS7Q96B45 105 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms