RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 RPL19P84098 196 aaKnown RBP11.09□□□□□ -0.63
LSM4-206ENST00000600289 C1orf134Q5TEV5 83 aa11.09□□□□□ -0.63
LSM4-206ENST00000600289 LOC100131303A0A0U1RQF7 123 aa11.08□□□□□ -0.64
LSM4-206ENST00000600289 IGHV3-73A0A0B4J1V6 119 aa11.07□□□□□ -0.64
LSM4-206ENST00000600289 M0R381 172 aa11.07□□□□□ -0.64
LSM4-206ENST00000600289 SIVA1O15304 175 aa11.07□□□□□ -0.64
LSM4-206ENST00000600289 LINC00694P0DN24 101 aa11.07□□□□□ -0.64
LSM4-206ENST00000600289 RPS20P60866 119 aaKnown RBP11.07□□□□□ -0.64
LSM4-206ENST00000600289 C6orf223Q8N319 242 aa11.07□□□□□ -0.64
LSM4-206ENST00000600289 SAMD10Q9BYL1 202 aa11.07□□□□□ -0.64
LSM4-206ENST00000600289 KRTAP1-5Q9BYS1 174 aa11.07□□□□□ -0.64
LSM4-206ENST00000600289 JPT2Q9H910 190 aa11.07□□□□□ -0.64
LSM4-206ENST00000600289 CRYGDP07320 174 aa11.06□□□□□ -0.64
LSM4-206ENST00000600289 DAZAP1Q96EP5 407 aaKnown RBP11.06□□□□□ -0.64
LSM4-206ENST00000600289 PRSS29PA6NIE9 313 aa11.05□□□□□ -0.64
LSM4-206ENST00000600289 K7EP13 123 aa11.05□□□□□ -0.64
LSM4-206ENST00000600289 IGLC6P0CF74 106 aa11.05□□□□□ -0.64
LSM4-206ENST00000600289 Q6ZSN1 163 aa11.05□□□□□ -0.64
LSM4-206ENST00000600289 OR10AG1Q8NH19 301 aa11.05□□□□□ -0.64
LSM4-206ENST00000600289 FAM210AQ96ND0 272 aa11.05□□□□□ -0.64
LSM4-206ENST00000600289 P01737 135 aa11.04□□□□□ -0.64
LSM4-206ENST00000600289 TOR2AQ5JU69 321 aa11.04□□□□□ -0.64
LSM4-206ENST00000600289 TEX261Q6UWH6 196 aa11.04□□□□□ -0.64
LSM4-206ENST00000600289 XKRY2A2RUG3 117 aa11.03□□□□□ -0.64
LSM4-206ENST00000600289 DNAH10OSP0CZ25 163 aa11.03□□□□□ -0.64
LSM4-206ENST00000600289 OR2D3Q8NGH3 330 aa11.03□□□□□ -0.64
LSM4-206ENST00000600289 LY96Q9Y6Y9 160 aa11.03□□□□□ -0.64
LSM4-206ENST00000600289 A0A087WWL8 130 aa11.02□□□□□ -0.65
LSM4-206ENST00000600289 TRBV10-1A0A0K0K1A3 114 aa11.02□□□□□ -0.65
LSM4-206ENST00000600289 FAM74A4Q5TZK3 123 aa11.02□□□□□ -0.65
LSM4-206ENST00000600289 SPANXN1Q5VSR9 72 aa11.02□□□□□ -0.65
LSM4-206ENST00000600289 WFDC10BQ8IUB3 73 aa11.02□□□□□ -0.65
LSM4-206ENST00000600289 C14orf178Q8N769 122 aaPredicted RBP11.02□□□□□ -0.65
LSM4-206ENST00000600289 ATP6V0E2Q8NHE4 81 aa11.02□□□□□ -0.65
LSM4-206ENST00000600289 OCC1Q8TAD7 63 aa11.02□□□□□ -0.65
LSM4-206ENST00000600289 K7EN84 100 aa11.01□□□□□ -0.65
LSM4-206ENST00000600289 RAB4BP61018 213 aa11.01□□□□□ -0.65
LSM4-206ENST00000600289 FER1L6-AS1Q8NA97 138 aa11.01□□□□□ -0.65
LSM4-206ENST00000600289 NUDT10Q8NFP7 164 aa11.01□□□□□ -0.65
LSM4-206ENST00000600289 NUDT11Q96G61 164 aa11.01□□□□□ -0.65
LSM4-206ENST00000600289 EIF5A2Q9GZV4 153 aaKnown RBP11.01□□□□□ -0.65
LSM4-206ENST00000600289 GTSF1LQ9H1H1 148 aa11.01□□□□□ -0.65
LSM4-206ENST00000600289 F2Z2F3 143 aa11□□□□□ -0.65
LSM4-206ENST00000600289 GZMBP10144 247 aa11□□□□□ -0.65
LSM4-206ENST00000600289 CACNG7P62955 275 aa11□□□□□ -0.65
LSM4-206ENST00000600289 LELP1Q5T871 98 aa11□□□□□ -0.65
LSM4-206ENST00000600289 FAM231DQ6ZW35 169 aa11□□□□□ -0.65
LSM4-206ENST00000600289 AP1S3Q96PC3 154 aa11□□□□□ -0.65
LSM4-206ENST00000600289 KIF25-AS1Q9Y6Z4 181 aa11□□□□□ -0.65
LSM4-206ENST00000600289 APOBP04114 4563 aaKnown RBP11□□□□□ -0.65
LSM4-206ENST00000600289 TRAV9-2A0A087WT02 112 aa10.99□□□□□ -0.65
LSM4-206ENST00000600289 SRP19P09132 144 aaKnown RBP10.99□□□□□ -0.65
LSM4-206ENST00000600289 CTRLP40313 264 aa10.99□□□□□ -0.65
LSM4-206ENST00000600289 OR10G8Q8NGN5 311 aa10.99□□□□□ -0.65
LSM4-206ENST00000600289 RPP21Q9H633 154 aaKnown RBP10.99□□□□□ -0.65
LSM4-206ENST00000600289 DMBT1Q9UGM3 2413 aaPredicted RBP10.99□□□□□ -0.65
LSM4-206ENST00000600289 LRP1BQ9NZR2 4599 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 TRAV8-6A0A0B4J262 113 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 GAGE12JA6NER3 117 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 EVI2AP22794 236 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 LINC00315P59091 139 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 GAGE1Q13065 139 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 GAGE4Q13068 117 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 GAGE5Q13069 117 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 GAGE13Q4V321 117 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 LINC01556Q5JQF7 62 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 WDR73Q6P4I2 378 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 CNFNQ9BYD5 112 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 Q9UF83 564 aa10.98□□□□□ -0.65
LSM4-206ENST00000600289 A0A087WWC5 75 aa10.97□□□□□ -0.65
LSM4-206ENST00000600289 IGHV3-38A0A0C4DH36 116 aa10.97□□□□□ -0.65
LSM4-206ENST00000600289 Q6ZRN7 208 aaPredicted RBP10.97□□□□□ -0.65
LSM4-206ENST00000600289 C10orf126Q8N4M7 172 aa10.97□□□□□ -0.65
LSM4-206ENST00000600289 SMIM7Q9BQ49 75 aa10.97□□□□□ -0.65
LSM4-206ENST00000600289 RNASE7Q9H1E1 156 aaKnown RBP10.97□□□□□ -0.65
LSM4-206ENST00000600289 SMDT1Q9H4I9 107 aa10.97□□□□□ -0.65
LSM4-206ENST00000600289 MUC21A0A0G2JKD1 596 aa10.96□□□□□ -0.65
LSM4-206ENST00000600289 MUC21A0A140T8X8 626 aa10.96□□□□□ -0.65
LSM4-206ENST00000600289 RPL36AP83881 106 aaKnown RBP10.96□□□□□ -0.65
LSM4-206ENST00000600289 TNP2Q05952 138 aa10.96□□□□□ -0.65
LSM4-206ENST00000600289 ZNF56Q15929 161 aa10.96□□□□□ -0.65
LSM4-206ENST00000600289 CT83Q5H943 113 aa10.96□□□□□ -0.65
LSM4-206ENST00000600289 OR10J3Q5JRS4 329 aa10.96□□□□□ -0.65
LSM4-206ENST00000600289 LINC01551Q86U37 167 aa10.96□□□□□ -0.65
LSM4-206ENST00000600289 RPL36ALQ969Q0 106 aaKnown RBP10.96□□□□□ -0.65
LSM4-206ENST00000600289 TRBV7-3A0A075B6L6 115 aa10.95□□□□□ -0.66
LSM4-206ENST00000600289 SMIM17P0DL12 118 aa10.95□□□□□ -0.66
LSM4-206ENST00000600289 CEBPGP53567 150 aa10.95□□□□□ -0.66
LSM4-206ENST00000600289 UBE2D3P61077 147 aa10.95□□□□□ -0.66
LSM4-206ENST00000600289 UBE2D2P62837 147 aa10.95□□□□□ -0.66
LSM4-206ENST00000600289 FAM74A3Q4VXF1 159 aa10.95□□□□□ -0.66
LSM4-206ENST00000600289 LYZL1Q6UWQ5 148 aa10.95□□□□□ -0.66
LSM4-206ENST00000600289 NFE4Q86UQ8 179 aa10.95□□□□□ -0.66
LSM4-206ENST00000600289 MAPKAPK5-AS1Q8N8E1 139 aa10.95□□□□□ -0.66
LSM4-206ENST00000600289 TPPP3Q9BW30 176 aa10.95□□□□□ -0.66
LSM4-206ENST00000600289 ZNF727A8MUV8 499 aa10.94□□□□□ -0.66
LSM4-206ENST00000600289 TRGC1P0CF51 173 aa10.94□□□□□ -0.66
LSM4-206ENST00000600289 MSRB1Q9NZV6 116 aa10.94□□□□□ -0.66
LSM4-206ENST00000600289 GATCO43716 136 aaKnown RBP10.93□□□□□ -0.66
LSM4-206ENST00000600289 NEXN-AS1Q8NBZ9 246 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 134.4 ms