RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 STAG3L3P0CL85 134 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 MT1HL1P0DM35 61 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 CRIP1P50238 77 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 ZFP69Q49AA0 526 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 TOR2AQ5JU69 321 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 CLPSL2Q6UWE3 100 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 ENHOQ6UWT2 76 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 ZFP2Q6ZN57 461 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 OR2G3Q8NGZ4 309 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 RAB24Q969Q5 203 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 ARL2-SNX15V9GYD0 113 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 B4DEV8 164 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 TMEM262E9PQX1 116 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 M0R381 172 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 HLA-DQA1P01909 254 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 ARMS2P0C7Q2 107 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 UBE2G2P60604 165 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 CYCSP99999 105 aaKnown RBP5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 ARL6IP6Q8N6S5 226 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 C15orf54Q8N8G6 183 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 PTH2Q96A98 100 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 RMI2Q96E14 147 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 KRTAP9-9Q9BYP9 154 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 KRTAP9-4Q9BYQ2 154 aa5.57□□□□□ -1.52
SHKBP1-220ENST00000599716 A0A087WWC5 75 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 USP17L23D6RBM5 183 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 K7EQM0 130 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 SH2D1AO60880 128 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 UPK1BO75841 260 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 PRSS1P07477 247 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 ATP6V0CP27449 155 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 MPV17L2Q567V2 206 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 Q86TA4 180 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 SUN5Q8TC36 379 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 ZC2HC1AQ96GY0 325 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 C1orf43Q9BWL3 253 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 COX11Q9Y6N1 276 aa5.56□□□□□ -1.52
SHKBP1-220ENST00000599716 MUC21A0A0G2JKD1 596 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 MUC21A0A140T8X8 626 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 SERTM2A0A1B0GWG4 89 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 FABP5P3A8MUU1 101 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 KRBOX1C9JBD0 128 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 IFNA7P01567 189 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 FGF8P55075 233 aaPredicted RBP5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 UBE2D3P61077 147 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 SSTP61278 116 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 UBE2D2P62837 147 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 ZNF726P1Q15940 193 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 ATRAIDQ6UW56 229 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 OR11H4Q8NGC9 324 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 FAM210AQ96ND0 272 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 IL36BQ9NZH7 164 aa5.55□□□□□ -1.52
SHKBP1-220ENST00000599716 PEX7O00628 323 aa5.54□□□□□ -1.52
SHKBP1-220ENST00000599716 ANGP03950 147 aaKnown RBP5.54□□□□□ -1.52
SHKBP1-220ENST00000599716 PET100P0DJ07 73 aa5.54□□□□□ -1.52
SHKBP1-220ENST00000599716 RPL19P84098 196 aaKnown RBP5.54□□□□□ -1.52
SHKBP1-220ENST00000599716 Q5BKY6 102 aa5.54□□□□□ -1.52
SHKBP1-220ENST00000599716 SAPCD1Q5SSQ6 148 aa5.54□□□□□ -1.52
SHKBP1-220ENST00000599716 SFRP2Q96HF1 295 aa5.54□□□□□ -1.52
SHKBP1-220ENST00000599716 MARVELD1Q9BSK0 173 aa5.54□□□□□ -1.52
SHKBP1-220ENST00000599716 PHLDA3Q9Y5J5 127 aa5.54□□□□□ -1.52
SHKBP1-220ENST00000599716 IGLV10-54A0A075B6I4 117 aa5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 TRBV6-8A0A0A6YYG3 113 aa5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 RHODO00212 210 aa5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 CXorf1O96002 111 aa5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 CRPP02741 224 aa5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 CHTF8P0CG12 524 aa5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 RPL36AP83881 106 aaKnown RBP5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 KCNIP4Q6PIL6 250 aa5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 RPL36ALQ969Q0 106 aaKnown RBP5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 TMEM167BQ9NRX6 74 aa5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 CRCT1Q9UGL9 99 aa5.53□□□□□ -1.52
SHKBP1-220ENST00000599716 TRBV7-3A0A075B6L6 115 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 KRTAP4-8A0A0G2JLE6 195 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 PTTG1O95997 202 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 TPT1P13693 172 aaKnown RBP5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 Q0VG73 95 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 GAGE6Q13070 117 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 ELOBQ15370 118 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 ZNF56Q15929 161 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 PIK3CD-AS1Q5SR53 167 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 RPL7L1Q6DKI1 246 aaKnown RBP5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 KRTAP26-1Q6PEX3 210 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 NTM-AS1Q6ZSK4 140 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 NEXN-AS1Q8NBZ9 246 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 OR10AG1Q8NH19 301 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 S100ZQ8WXG8 99 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 CHCHD5Q9BSY4 110 aa5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 ACTR3CQ9C0K3 210 aaPredicted RBP5.52□□□□□ -1.53
SHKBP1-220ENST00000599716 A0A1W2PRE2 83 aa5.51□□□□□ -1.53
SHKBP1-220ENST00000599716 FAM74A7A6NL05 159 aa5.51□□□□□ -1.53
SHKBP1-220ENST00000599716 SEC11BP0C7V7 166 aa5.51□□□□□ -1.53
SHKBP1-220ENST00000599716 RAB5CP51148 216 aa5.51□□□□□ -1.53
SHKBP1-220ENST00000599716 C14orf177Q52M58 125 aa5.51□□□□□ -1.53
SHKBP1-220ENST00000599716 SDIM1Q6ZPB5 146 aa5.51□□□□□ -1.53
SHKBP1-220ENST00000599716 LINC00269Q8N2A0 174 aa5.51□□□□□ -1.53
SHKBP1-220ENST00000599716 C9orf163Q8N9P6 203 aa5.51□□□□□ -1.53
SHKBP1-220ENST00000599716 PSMG3Q9BT73 122 aaPredicted RBP5.51□□□□□ -1.53
SHKBP1-220ENST00000599716 ALG5Q9Y673 324 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms