RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 SSTP61278 116 aa10.94□□□□□ -0.66
SS18-215ENST00000580642 SLAQ13239 276 aa10.94□□□□□ -0.66
SS18-215ENST00000580642 SBSPONQ8IVN8 264 aa10.94□□□□□ -0.66
SS18-215ENST00000580642 C14orf178Q8N769 122 aaPredicted RBP10.94□□□□□ -0.66
SS18-215ENST00000580642 EDA2RQ9HAV5 297 aa10.94□□□□□ -0.66
SS18-215ENST00000580642 TRAV4A0A0B4J268 109 aa10.93□□□□□ -0.66
SS18-215ENST00000580642 RAB5BP61020 215 aa10.93□□□□□ -0.66
SS18-215ENST00000580642 AMN1Q8IY45 258 aa10.93□□□□□ -0.66
SS18-215ENST00000580642 MRAPQ8TCY5 172 aa10.93□□□□□ -0.66
SS18-215ENST00000580642 B9D2Q9BPU9 175 aa10.93□□□□□ -0.66
SS18-215ENST00000580642 MRPL16Q9NX20 251 aaKnown RBP10.93□□□□□ -0.66
SS18-215ENST00000580642 U3KQK5 164 aa10.93□□□□□ -0.66
SS18-215ENST00000580642 SPART-AS1P0CW21 52 aa10.92□□□□□ -0.66
SS18-215ENST00000580642 LINC00315P59091 139 aa10.92□□□□□ -0.66
SS18-215ENST00000580642 CFAP126Q5VTH2 177 aa10.92□□□□□ -0.66
SS18-215ENST00000580642 ORMDL3Q8N138 153 aa10.92□□□□□ -0.66
SS18-215ENST00000580642 RNF185Q96GF1 192 aa10.92□□□□□ -0.66
SS18-215ENST00000580642 ZMAT4Q9H898 229 aa10.92□□□□□ -0.66
SS18-215ENST00000580642 DKK2Q9UBU2 259 aa10.92□□□□□ -0.66
SS18-215ENST00000580642 MUC4Q99102 2169 aa10.92□□□□□ -0.66
SS18-215ENST00000580642 H7C1H1 209 aa10.91□□□□□ -0.66
SS18-215ENST00000580642 NHLRC4P0CG21 123 aaPredicted RBP10.91□□□□□ -0.66
SS18-215ENST00000580642 MRPL51Q4U2R6 128 aaKnown RBP10.91□□□□□ -0.66
SS18-215ENST00000580642 UFSP1Q6NVU6 142 aa10.91□□□□□ -0.66
SS18-215ENST00000580642 Q6ZTI0 123 aa10.91□□□□□ -0.66
SS18-215ENST00000580642 OR4C5Q8NGB2 326 aa10.91□□□□□ -0.66
SS18-215ENST00000580642 TRGV2A0A075B6R0 118 aa10.9□□□□□ -0.66
SS18-215ENST00000580642 CKS2P33552 79 aa10.9□□□□□ -0.66
SS18-215ENST00000580642 ALKBH7Q9BT30 221 aaPredicted RBP10.9□□□□□ -0.66
SS18-215ENST00000580642 EMP1P54849 157 aa10.89□□□□□ -0.67
SS18-215ENST00000580642 OR10J3Q5JRS4 329 aa10.89□□□□□ -0.67
SS18-215ENST00000580642 FAM222AQ5U5X8 452 aa10.89□□□□□ -0.67
SS18-215ENST00000580642 A0A087WWL8 130 aa10.88□□□□□ -0.67
SS18-215ENST00000580642 GAGE12BA1L429 117 aa10.88□□□□□ -0.67
SS18-215ENST00000580642 GAGE7O76087 117 aa10.88□□□□□ -0.67
SS18-215ENST00000580642 GAGE12FP0CL80 117 aa10.88□□□□□ -0.67
SS18-215ENST00000580642 GAGE12GP0CL81 117 aa10.88□□□□□ -0.67
SS18-215ENST00000580642 GAGE12IP0CL82 117 aa10.88□□□□□ -0.67
SS18-215ENST00000580642 Q0VG73 95 aa10.88□□□□□ -0.67
SS18-215ENST00000580642 PRELID3AQ96N28 172 aa10.88□□□□□ -0.67
SS18-215ENST00000580642 SAMD10Q9BYL1 202 aa10.88□□□□□ -0.67
SS18-215ENST00000580642 JPT2Q9H910 190 aa10.88□□□□□ -0.67
SS18-215ENST00000580642 PRSS47A8MTI9 375 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 D6R8Y8 96 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST1H2BKO60814 126 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 IGHV3-53P01767 116 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST1H2BJP06899 126 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 MGPP08493 103 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST1H2BOP23527 126 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 SRIP30626 198 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST1H2BBP33778 126 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST1H2BDP58876 126 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST1H2BCP62807 126 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST2H2BEQ16778 126 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.87□□□□□ -0.67
SS18-215ENST00000580642 FAM74A4Q5TZK3 123 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST1H2BHQ93079 126 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST1H2BNQ99877 126 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 HIST1H2BMQ99879 126 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 C20orf78Q9BR46 151 aa10.87□□□□□ -0.67
SS18-215ENST00000580642 TRBV10-1A0A0K0K1A3 114 aa10.86□□□□□ -0.67
SS18-215ENST00000580642 TRBV6-5A0A0K0K1A5 114 aa10.86□□□□□ -0.67
SS18-215ENST00000580642 TRBV6-4A0A1B0GX49 114 aa10.86□□□□□ -0.67
SS18-215ENST00000580642 F5H697 171 aa10.86□□□□□ -0.67
SS18-215ENST00000580642 M0QY20 66 aa10.86□□□□□ -0.67
SS18-215ENST00000580642 ZNF56Q15929 161 aa10.86□□□□□ -0.67
SS18-215ENST00000580642 KIAA1644Q3SXP7 199 aa10.86□□□□□ -0.67
SS18-215ENST00000580642 SUMO4Q6EEV6 95 aa10.86□□□□□ -0.67
SS18-215ENST00000580642 RETNQ9HD89 108 aa10.86□□□□□ -0.67
SS18-215ENST00000580642 DAD1P61803 113 aa10.85□□□□□ -0.67
SS18-215ENST00000580642 RPL32P62910 135 aaKnown RBP10.85□□□□□ -0.67
SS18-215ENST00000580642 COA6Q5JTJ3 125 aaKnown RBP10.85□□□□□ -0.67
SS18-215ENST00000580642 DNAJC30Q96LL9 226 aa10.85□□□□□ -0.67
SS18-215ENST00000580642 TNFRSF6BO95407 300 aa10.84□□□□□ -0.67
SS18-215ENST00000580642 DEFB130BP0DP73 79 aa10.84□□□□□ -0.67
SS18-215ENST00000580642 DEFB130AP0DP74 79 aa10.84□□□□□ -0.67
SS18-215ENST00000580642 DEFA6Q01524 100 aa10.84□□□□□ -0.67
SS18-215ENST00000580642 NRACQ8N912 160 aa10.84□□□□□ -0.67
SS18-215ENST00000580642 ZNF479Q96JC4 524 aa10.84□□□□□ -0.67
SS18-215ENST00000580642 NIT2Q9NQR4 276 aa10.84□□□□□ -0.67
SS18-215ENST00000580642 K7EMI3 77 aa10.83□□□□□ -0.68
SS18-215ENST00000580642 ATP5G1P05496 136 aa10.83□□□□□ -0.68
SS18-215ENST00000580642 GATA1P15976 413 aaPredicted RBP10.83□□□□□ -0.68
SS18-215ENST00000580642 C18orf32Q8TCD1 76 aa10.83□□□□□ -0.68
SS18-215ENST00000580642 MAP1LC3AQ9H492 121 aa10.83□□□□□ -0.68
SS18-215ENST00000580642 NBEAL2Q6ZNJ1 2754 aa10.82□□□□□ -0.68
SS18-215ENST00000580642 TRGV4A0A0C4DH28 118 aa10.82□□□□□ -0.68
SS18-215ENST00000580642 DEFB4AO15263 64 aa10.82□□□□□ -0.68
SS18-215ENST00000580642 FHL2Q14192 279 aa10.82□□□□□ -0.68
SS18-215ENST00000580642 NXT2Q9NPJ8 142 aaKnown RBP10.82□□□□□ -0.68
SS18-215ENST00000580642 TRAV26-2A0A0B4J265 109 aa10.81□□□□□ -0.68
SS18-215ENST00000580642 A0A0J9YWU9 116 aa10.81□□□□□ -0.68
SS18-215ENST00000580642 TCAPO15273 167 aa10.81□□□□□ -0.68
SS18-215ENST00000580642 NCR2O95944 276 aa10.81□□□□□ -0.68
SS18-215ENST00000580642 NPYP01303 97 aa10.81□□□□□ -0.68
SS18-215ENST00000580642 S100A6P06703 90 aa10.81□□□□□ -0.68
SS18-215ENST00000580642 SUMO2P61956 95 aaKnown RBP10.81□□□□□ -0.68
SS18-215ENST00000580642 RHOHQ15669 191 aa10.81□□□□□ -0.68
SS18-215ENST00000580642 ST20Q9HBF5 79 aa10.81□□□□□ -0.68
SS18-215ENST00000580642 PRO0255Q9UI72 69 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms