RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 TRGV4A0A0C4DH28 118 aa6.31□□□□□ -1.4
VPS35-206ENST00000565228 M0R381 172 aa6.31□□□□□ -1.4
VPS35-206ENST00000565228 CXCL1P09341 107 aa6.31□□□□□ -1.4
VPS35-206ENST00000565228 GYPEP15421 78 aa6.31□□□□□ -1.4
VPS35-206ENST00000565228 S100A4P26447 101 aaKnown RBP6.31□□□□□ -1.4
VPS35-206ENST00000565228 SSTP61278 116 aa6.31□□□□□ -1.4
VPS35-206ENST00000565228 RNF212Q495C1 297 aa6.31□□□□□ -1.4
VPS35-206ENST00000565228 LYPD5Q6UWN5 251 aa6.31□□□□□ -1.4
VPS35-206ENST00000565228 OR2D3Q8NGH3 330 aa6.31□□□□□ -1.4
VPS35-206ENST00000565228 OR5AL1P0C617 328 aa6.3□□□□□ -1.4
VPS35-206ENST00000565228 MED14OSP0DP75 135 aa6.3□□□□□ -1.4
VPS35-206ENST00000565228 TAGLN2P37802 199 aaKnown RBP6.3□□□□□ -1.4
VPS35-206ENST00000565228 CEBPGP53567 150 aa6.3□□□□□ -1.4
VPS35-206ENST00000565228 LINC01551Q86U37 167 aa6.3□□□□□ -1.4
VPS35-206ENST00000565228 SMIM12Q96EX1 92 aa6.3□□□□□ -1.4
VPS35-206ENST00000565228 EIF5A2Q9GZV4 153 aaKnown RBP6.3□□□□□ -1.4
VPS35-206ENST00000565228 NDUFS6O75380 124 aaKnown RBP6.29□□□□□ -1.4
VPS35-206ENST00000565228 FOXA3P55318 350 aaPredicted RBP6.29□□□□□ -1.4
VPS35-206ENST00000565228 PIK3CD-AS1Q5SR53 167 aa6.29□□□□□ -1.4
VPS35-206ENST00000565228 WFDC10BQ8IUB3 73 aa6.29□□□□□ -1.4
VPS35-206ENST00000565228 UBE2DNLQ8IWF7 75 aa6.29□□□□□ -1.4
VPS35-206ENST00000565228 Q8N3U1 123 aa6.29□□□□□ -1.4
VPS35-206ENST00000565228 UPK3BQ9BT76 320 aa6.29□□□□□ -1.4
VPS35-206ENST00000565228 MRPS16Q9Y3D3 137 aaKnown RBP6.29□□□□□ -1.4
VPS35-206ENST00000565228 PHLDA3Q9Y5J5 127 aa6.29□□□□□ -1.4
VPS35-206ENST00000565228 TNFRSF18Q9Y5U5 241 aa6.29□□□□□ -1.4
VPS35-206ENST00000565228 ICOSQ9Y6W8 199 aa6.29□□□□□ -1.4
VPS35-206ENST00000565228 TRBV6-4A0A1B0GX49 114 aa6.28□□□□□ -1.4
VPS35-206ENST00000565228 A8MWV9 139 aa6.28□□□□□ -1.4
VPS35-206ENST00000565228 P01737 135 aa6.28□□□□□ -1.4
VPS35-206ENST00000565228 RPL23P62829 140 aaKnown RBP6.28□□□□□ -1.4
VPS35-206ENST00000565228 FAM74A4Q5TZK3 123 aa6.28□□□□□ -1.4
VPS35-206ENST00000565228 LYZL1Q6UWQ5 148 aa6.28□□□□□ -1.4
VPS35-206ENST00000565228 ZFP2Q6ZN57 461 aa6.28□□□□□ -1.4
VPS35-206ENST00000565228 ZFP82Q8N141 532 aa6.28□□□□□ -1.4
VPS35-206ENST00000565228 SMIM7Q9BQ49 75 aa6.28□□□□□ -1.4
VPS35-206ENST00000565228 RPP21Q9H633 154 aaKnown RBP6.28□□□□□ -1.4
VPS35-206ENST00000565228 Q9H8V8 135 aa6.28□□□□□ -1.4
VPS35-206ENST00000565228 NBDYA0A0U1RRE5 68 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 GAGE12JA6NER3 117 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 ZNF727A8MUV8 499 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 CTRLP40313 264 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 CCL18P55774 89 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 GAGE1Q13065 139 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 GAGE4Q13068 117 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 GAGE5Q13069 117 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 MRPL23Q16540 153 aaKnown RBP6.27□□□□□ -1.41
VPS35-206ENST00000565228 GAGE13Q4V321 117 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 FAM231DQ6ZW35 169 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 NEGR1Q7Z3B1 354 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 FER1L6-AS1Q8NA97 138 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 LY96Q9Y6Y9 160 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 V9GYV3 84 aa6.27□□□□□ -1.41
VPS35-206ENST00000565228 LRP1BQ9NZR2 4599 aa6.26□□□□□ -1.41
VPS35-206ENST00000565228 A0A1B0GVY2 172 aa6.26□□□□□ -1.41
VPS35-206ENST00000565228 GAS8-AS1O95177 125 aa6.26□□□□□ -1.41
VPS35-206ENST00000565228 EVI2AP22794 236 aa6.26□□□□□ -1.41
VPS35-206ENST00000565228 SRIP30626 198 aa6.26□□□□□ -1.41
VPS35-206ENST00000565228 SLAQ13239 276 aa6.26□□□□□ -1.41
VPS35-206ENST00000565228 CLLU1Q5K131 121 aa6.26□□□□□ -1.41
VPS35-206ENST00000565228 ISOC2Q96AB3 205 aa6.26□□□□□ -1.41
VPS35-206ENST00000565228 DAZAP1Q96EP5 407 aaKnown RBP6.26□□□□□ -1.41
VPS35-206ENST00000565228 TPPP3Q9BW30 176 aa6.26□□□□□ -1.41
VPS35-206ENST00000565228 CNFNQ9BYD5 112 aa6.26□□□□□ -1.41
VPS35-206ENST00000565228 GATCO43716 136 aaKnown RBP6.25□□□□□ -1.41
VPS35-206ENST00000565228 ADCYAP1P18509 176 aa6.25□□□□□ -1.41
VPS35-206ENST00000565228 NTF3P20783 257 aa6.25□□□□□ -1.41
VPS35-206ENST00000565228 FAM3BP58499 235 aaPredicted RBP6.25□□□□□ -1.41
VPS35-206ENST00000565228 RHOHQ15669 191 aa6.25□□□□□ -1.41
VPS35-206ENST00000565228 SYT8Q8NBV8 401 aa6.25□□□□□ -1.41
VPS35-206ENST00000565228 NEXN-AS1Q8NBZ9 246 aa6.25□□□□□ -1.41
VPS35-206ENST00000565228 CIDEAO60543 219 aa6.24□□□□□ -1.41
VPS35-206ENST00000565228 RPS20P60866 119 aaKnown RBP6.24□□□□□ -1.41
VPS35-206ENST00000565228 PEA15Q15121 130 aa6.24□□□□□ -1.41
VPS35-206ENST00000565228 SPANXN1Q5VSR9 72 aa6.24□□□□□ -1.41
VPS35-206ENST00000565228 Q6ZRN7 208 aaPredicted RBP6.24□□□□□ -1.41
VPS35-206ENST00000565228 PGLYRP4Q96LB8 373 aa6.24□□□□□ -1.41
VPS35-206ENST00000565228 OSTCQ9NRP0 149 aa6.24□□□□□ -1.41
VPS35-206ENST00000565228 IGHV3-38A0A0C4DH36 116 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 M0QY20 66 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 RHODO00212 210 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 ERVFC1-1P60608 527 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 UBE2D3P61077 147 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 UBE2D2P62837 147 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 TNP2Q05952 138 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 TMEM241Q24JQ0 296 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 SUMO4Q6EEV6 95 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 NTM-AS1Q6ZSK4 140 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 OR10G8Q8NGN5 311 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 ATP6V0E2Q8NHE4 81 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 DEFB104AQ8WTQ1 72 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 DNAJC30Q96LL9 226 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 PRADC1Q9BSG0 188 aa6.23□□□□□ -1.41
VPS35-206ENST00000565228 TRAV26-2A0A0B4J265 109 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 SIVA1O15304 175 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 DNAH10OSP0CZ25 163 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 TIRAPP58753 221 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 RAB4BP61018 213 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 CACNG7P62955 275 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 ADIRFQ15847 76 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms