RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TAX1BP3O14907 124 aa8.22□□□□□ -1.09
USP3-218ENST00000560202 SPINK4O60575 86 aa8.22□□□□□ -1.09
USP3-218ENST00000560202 RBMY1A1P0DJD3 496 aaKnown RBP8.22□□□□□ -1.09
USP3-218ENST00000560202 RBMY1CP0DJD4 496 aa8.22□□□□□ -1.09
USP3-218ENST00000560202 RPL35AP18077 110 aaKnown RBP8.22□□□□□ -1.09
USP3-218ENST00000560202 RIPPLY3P57055 190 aa8.22□□□□□ -1.09
USP3-218ENST00000560202 SEC11AP67812 179 aa8.22□□□□□ -1.09
USP3-218ENST00000560202 RBMY1FQ15415 496 aaKnown RBP8.22□□□□□ -1.09
USP3-218ENST00000560202 FAM159AQ6UWV7 190 aa8.22□□□□□ -1.09
USP3-218ENST00000560202 GTF2H5Q6ZYL4 71 aa8.22□□□□□ -1.09
USP3-218ENST00000560202 NOTCH3Q9UM47 2321 aa8.22□□□□□ -1.09
USP3-218ENST00000560202 TMEM238C9JI98 176 aa8.21□□□□□ -1.09
USP3-218ENST00000560202 INSP01308 110 aa8.21□□□□□ -1.09
USP3-218ENST00000560202 IGLC6P0CF74 106 aa8.21□□□□□ -1.09
USP3-218ENST00000560202 NTF3P20783 257 aa8.21□□□□□ -1.09
USP3-218ENST00000560202 EGFEM1PQ0D2K5 195 aa8.21□□□□□ -1.09
USP3-218ENST00000560202 BVES-AS1Q5T3Y7 98 aa8.21□□□□□ -1.09
USP3-218ENST00000560202 TPPP3Q9BW30 176 aa8.21□□□□□ -1.09
USP3-218ENST00000560202 XCL2Q9UBD3 114 aa8.21□□□□□ -1.09
USP3-218ENST00000560202 IGHV1OR15-1A0A075B7D0 117 aa8.21□□□□□ -1.1
USP3-218ENST00000560202 GNRH2O43555 120 aa8.21□□□□□ -1.1
USP3-218ENST00000560202 SCGB1A1P11684 91 aa8.21□□□□□ -1.1
USP3-218ENST00000560202 KRTAP10-11P60412 298 aa8.21□□□□□ -1.1
USP3-218ENST00000560202 MORN3Q6PF18 240 aaPredicted RBP8.21□□□□□ -1.1
USP3-218ENST00000560202 LYZL1Q6UWQ5 148 aa8.21□□□□□ -1.1
USP3-218ENST00000560202 FER1L6-AS1Q8NA97 138 aa8.21□□□□□ -1.1
USP3-218ENST00000560202 G3V4G9 280 aa8.2□□□□□ -1.1
USP3-218ENST00000560202 GIG44P09565 113 aaPredicted RBP8.2□□□□□ -1.1
USP3-218ENST00000560202 FRMD6-AS1P0C7T7 363 aa8.2□□□□□ -1.1
USP3-218ENST00000560202 ASIPP42127 132 aa8.2□□□□□ -1.1
USP3-218ENST00000560202 PKD1L1Q8TDX9 2849 aa8.19□□□□□ -1.1
USP3-218ENST00000560202 A0A1B0GUT8 65 aa8.19□□□□□ -1.1
USP3-218ENST00000560202 GAGE12BA1L429 117 aa8.19□□□□□ -1.1
USP3-218ENST00000560202 ARMS2P0C7Q2 107 aa8.19□□□□□ -1.1
USP3-218ENST00000560202 SMIM17P0DL12 118 aa8.19□□□□□ -1.1
USP3-218ENST00000560202 SAMD5Q5TGI4 173 aa8.19□□□□□ -1.1
USP3-218ENST00000560202 SSBP4Q9BWG4 385 aaPredicted RBP8.19□□□□□ -1.1
USP3-218ENST00000560202 C1QTNF4Q9BXJ3 329 aa8.19□□□□□ -1.1
USP3-218ENST00000560202 A0A1B0GXF2 115 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 S100A4P26447 101 aaKnown RBP8.18□□□□□ -1.1
USP3-218ENST00000560202 KIAA1644Q3SXP7 199 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 MPV17L2Q567V2 206 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 C1orf158Q8N1D5 194 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 FAM19A2Q8N3H0 131 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 LINC01587Q99440 93 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 LOC102724200A0A096LPH7 203 aaPredicted RBP8.18□□□□□ -1.1
USP3-218ENST00000560202 MUC21A0A0G2JKD1 596 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 MUC21A0A140T8X8 626 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 SYS1-DBNDD2H3BUS1 97 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 H3BVH4 76 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 SNAI2O43623 268 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 NUDT3O95989 172 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 MED14OSP0DP75 135 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 RNASE3P12724 160 aaKnown RBP8.18□□□□□ -1.1
USP3-218ENST00000560202 CAMPP49913 170 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 RIGQ13278 110 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 LINC00467Q9BRT7 94 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 HSPB8Q9UJY1 196 aa8.18□□□□□ -1.1
USP3-218ENST00000560202 TRGV11A0A075B6L2 103 aa8.17□□□□□ -1.1
USP3-218ENST00000560202 IGHV3-16A0A0C4DH30 117 aa8.17□□□□□ -1.1
USP3-218ENST00000560202 HTN1P15515 57 aa8.17□□□□□ -1.1
USP3-218ENST00000560202 HBBP68871 147 aa8.17□□□□□ -1.1
USP3-218ENST00000560202 CSNK1G2-AS1Q8NCQ2 148 aa8.17□□□□□ -1.1
USP3-218ENST00000560202 CNFNQ9BYD5 112 aa8.17□□□□□ -1.1
USP3-218ENST00000560202 SCRT2Q9NQ03 307 aa8.17□□□□□ -1.1
USP3-218ENST00000560202 TIMM8BQ9Y5J9 83 aaPredicted RBP8.17□□□□□ -1.1
USP3-218ENST00000560202 IGHV3OR16-12A0A075B7B8 117 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 A0A1B0GW15 77 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 A6NDN8 102 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 IGHV4-30-4P0DP06 118 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 SLAQ13239 276 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 AMMECR1LQ6DCA0 310 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 RNASEKQ6P5S7 137 aaKnown RBP8.16□□□□□ -1.1
USP3-218ENST00000560202 SPATA12Q7Z6I5 190 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 ATOH7Q8N100 152 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 OR5A1Q8NGJ0 315 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 OR10AG1Q8NH19 301 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 MAP1LC3CQ9BXW4 147 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 MDFICQ9P1T7 246 aa8.16□□□□□ -1.1
USP3-218ENST00000560202 GAGE10A6NGK3 116 aa8.15□□□□□ -1.1
USP3-218ENST00000560202 H3BRM9 83 aa8.15□□□□□ -1.1
USP3-218ENST00000560202 PRM2P04554 102 aa8.15□□□□□ -1.1
USP3-218ENST00000560202 CACNG7P62955 275 aa8.15□□□□□ -1.1
USP3-218ENST00000560202 TWIST1Q15672 202 aa8.15□□□□□ -1.1
USP3-218ENST00000560202 SPANXN1Q5VSR9 72 aa8.15□□□□□ -1.1
USP3-218ENST00000560202 KIR2DL5BQ8NHK3 375 aa8.15□□□□□ -1.1
USP3-218ENST00000560202 AP1S3Q96PC3 154 aa8.15□□□□□ -1.1
USP3-218ENST00000560202 PHLDA3Q9Y5J5 127 aa8.15□□□□□ -1.1
USP3-218ENST00000560202 IGHV4-4A0A075B6R2 117 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 TMEM238LA0A1B0GVL6 79 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 SPRY2O43597 315 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 LEPROTL1O95214 131 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 APOC4P55056 127 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 MAJINQ3KP22 176 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 UFSP1Q6NVU6 142 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 C9orf85Q96MD7 179 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 MSRB1Q9NZV6 116 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 SIVA1O15304 175 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 COX8AP10176 69 aa8.14□□□□□ -1.11
USP3-218ENST00000560202 Q6ZVH6 145 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms