RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 LRP5O75197 1615 aa-1.05□□□□□ -2.58
VPS13C-205ENST00000558088 PLXNA1Q9UIW2 1896 aa-1.05□□□□□ -2.58
VPS13C-205ENST00000558088 FAM135BQ49AJ0 1406 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 PLCE1Q9P212 2302 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 TRAV1-2A0A0B4J238 106 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 LOC107984640A0A0U1RRK4 108 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 A0A1B0GW64 132 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 FAM92AA1XBS5 289 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 CTXN2P0C2S0 81 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 HSD11B1P28845 292 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 S100A3P33764 101 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 SPAG11AQ6PDA7 123 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 DCUN1D2Q6PH85 259 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 CCDC32Q9BV29 185 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 FXYD6Q9H0Q3 95 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 SCN3BQ9NY72 215 aa-1.06□□□□□ -2.58
VPS13C-205ENST00000558088 SLC25A5P05141 298 aaKnown RBP-1.07□□□□□ -2.58
VPS13C-205ENST00000558088 SMIM6P0DI80 62 aa-1.07□□□□□ -2.58
VPS13C-205ENST00000558088 NPC2P61916 151 aa-1.07□□□□□ -2.58
VPS13C-205ENST00000558088 DCDP81605 110 aaKnown RBP-1.07□□□□□ -2.58
VPS13C-205ENST00000558088 PLGLB1Q02325 96 aa-1.07□□□□□ -2.58
VPS13C-205ENST00000558088 CBLN4Q9NTU7 201 aa-1.07□□□□□ -2.58
VPS13C-205ENST00000558088 NDUFAF1Q9Y375 327 aa-1.07□□□□□ -2.58
VPS13C-205ENST00000558088 USH2AO75445 5202 aa-1.07□□□□□ -2.58
VPS13C-205ENST00000558088 TCOF1Q13428 1488 aaKnown RBP-1.07□□□□□ -2.58
VPS13C-205ENST00000558088 FASNP49327 2511 aaKnown RBP-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 SPTA1P02549 2419 aa-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 G3V318 75 aa-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 PGRMC1O00264 195 aaKnown RBP-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 UQCRQO14949 82 aa-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 PIN1P1O15428 100 aa-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 HIST1H1BP16401 226 aaKnown RBP-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 PI4KAP42356 2102 aa-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 SPCS2Q15005 226 aa-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 SNX29P2Q8IUI4 249 aa-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 DYNLRB2Q8TF09 96 aa-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 ERG28Q9UKR5 140 aa-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 FAT2Q9NYQ8 4349 aa-1.08□□□□□ -2.58
VPS13C-205ENST00000558088 TRAV12-3A0A0B4J271 114 aa-1.09□□□□□ -2.58
VPS13C-205ENST00000558088 BCE1O60756 84 aa-1.09□□□□□ -2.58
VPS13C-205ENST00000558088 PFDN1O60925 122 aa-1.09□□□□□ -2.58
VPS13C-205ENST00000558088 TCRAP04437 139 aa-1.09□□□□□ -2.58
VPS13C-205ENST00000558088 PSPHP78330 225 aa-1.09□□□□□ -2.58
VPS13C-205ENST00000558088 TMED4Q7Z7H5 227 aa-1.09□□□□□ -2.58
VPS13C-205ENST00000558088 PTPRGP23470 1445 aa-1.09□□□□□ -2.58
VPS13C-205ENST00000558088 C10orf71Q711Q0 1435 aa-1.09□□□□□ -2.58
VPS13C-205ENST00000558088 USF3Q68DE3 2245 aa-1.09□□□□□ -2.58
VPS13C-205ENST00000558088 FLGP20930 4061 aaPredicted RBP-1.1□□□□□ -2.58
VPS13C-205ENST00000558088 EDDM3BP56851 147 aa-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 RBM3P98179 157 aaKnown RBP-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 HSD17B12Q53GQ0 312 aa-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 STX12Q86Y82 276 aa-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 SLC35B3Q9H1N7 401 aa-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 PARVGQ9HBI0 331 aa-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 CALML5Q9NZT1 146 aa-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 METTL1Q9UBP6 276 aaKnown RBP-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 NOP16Q9Y3C1 178 aaKnown RBP-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 MED31Q9Y3C7 131 aa-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 KIAA1109Q2LD37 5005 aa-1.1□□□□□ -2.59
VPS13C-205ENST00000558088 LAMB1P07942 1786 aa-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 GOLGA3Q08378 1498 aa-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 CHD8Q9HCK8 2581 aa-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 BORCS7-ASMTA0A0B4J1R7 106 aa-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 TRBV7-6A0A0J9YX20 115 aa-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 SERPINB1P30740 379 aa-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 RPL22P35268 128 aaKnown RBP-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 CFAP126Q5VTH2 177 aa-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 NDUFA11Q86Y39 141 aa-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 HECTD1Q9ULT8 2610 aa-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 KIDINS220Q9ULH0 1771 aa-1.11□□□□□ -2.59
VPS13C-205ENST00000558088 UBR4Q5T4S7 5183 aa-1.12□□□□□ -2.59
VPS13C-205ENST00000558088 CCDC171Q6TFL3 1326 aa-1.12□□□□□ -2.59
VPS13C-205ENST00000558088 ARHGAP31Q2M1Z3 1444 aa-1.12□□□□□ -2.59
VPS13C-205ENST00000558088 M0R2P5 195 aa-1.12□□□□□ -2.59
VPS13C-205ENST00000558088 TP53AIP1Q9HCN2 124 aa-1.12□□□□□ -2.59
VPS13C-205ENST00000558088 NUP210Q8TEM1 1887 aaPredicted RBP-1.12□□□□□ -2.59
VPS13C-205ENST00000558088 A2MP01023 1474 aa-1.12□□□□□ -2.59
VPS13C-205ENST00000558088 MYO7BQ6PIF6 2116 aa-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 ANKRD31Q8N7Z5 1873 aa-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 TRAV2A0A0B4J234 112 aa-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 FAM107AO95990 144 aa-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 RBP4P02753 201 aa-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 MRPS15P82914 257 aaKnown RBP-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 RPL7L1Q6DKI1 246 aaKnown RBP-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 STOML2Q9UJZ1 356 aa-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 STARD9Q9P2P6 4700 aa-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 ATRQ13535 2644 aa-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 MYH1P12882 1939 aa-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 MYH2Q9UKX2 1941 aa-1.13□□□□□ -2.59
VPS13C-205ENST00000558088 A6NIN4 97 aa-1.14□□□□□ -2.59
VPS13C-205ENST00000558088 J3KT08 172 aa-1.14□□□□□ -2.59
VPS13C-205ENST00000558088 M0R2T5 61 aa-1.14□□□□□ -2.59
VPS13C-205ENST00000558088 WFDC6Q9BQY6 131 aa-1.14□□□□□ -2.59
VPS13C-205ENST00000558088 GID8Q9NWU2 228 aa-1.14□□□□□ -2.59
VPS13C-205ENST00000558088 BCL9LQ86UU0 1499 aa-1.14□□□□□ -2.59
VPS13C-205ENST00000558088 SVEP1Q4LDE5 3571 aa-1.15□□□□□ -2.59
VPS13C-205ENST00000558088 TRBV6-1A0A0K0K1D8 114 aa-1.15□□□□□ -2.59
VPS13C-205ENST00000558088 E7EQ34 232 aa-1.15□□□□□ -2.59
VPS13C-205ENST00000558088 SMIM24O75264 130 aa-1.15□□□□□ -2.59
VPS13C-205ENST00000558088 PIGYQ3MUY2 71 aa-1.15□□□□□ -2.59
Retrieved 100 of 20,778 RNA–protein pairs in 620.2 ms