RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 DYNAPQ8N1N2 210 aa10.38□□□□□ -0.75
SHMT2-226ENST00000556825 A0A0J9YXY3 114 aa10.37□□□□□ -0.75
SHMT2-226ENST00000556825 IGIPA6NJ69 53 aa10.37□□□□□ -0.75
SHMT2-226ENST00000556825 ZNF833PQ6ZTB9 187 aa10.37□□□□□ -0.75
SHMT2-226ENST00000556825 TMEM141Q96I45 108 aa10.37□□□□□ -0.75
SHMT2-226ENST00000556825 LYZL6O75951 148 aa10.37□□□□□ -0.75
SHMT2-226ENST00000556825 PCOLCEQ15113 449 aa10.37□□□□□ -0.75
SHMT2-226ENST00000556825 ZNRF1Q8ND25 227 aa10.37□□□□□ -0.75
SHMT2-226ENST00000556825 A0A087WVE0 104 aa10.36□□□□□ -0.75
SHMT2-226ENST00000556825 IGKV3D-7A0A0C4DH55 119 aa10.36□□□□□ -0.75
SHMT2-226ENST00000556825 CCL4P13236 92 aa10.36□□□□□ -0.75
SHMT2-226ENST00000556825 ZNF876PQ49A33 203 aa10.36□□□□□ -0.75
SHMT2-226ENST00000556825 RNF182Q8N6D2 247 aa10.36□□□□□ -0.75
SHMT2-226ENST00000556825 SVILO95425 2214 aa10.36□□□□□ -0.75
SHMT2-226ENST00000556825 IGKV3D-20A0A0C4DH25 116 aa10.35□□□□□ -0.75
SHMT2-226ENST00000556825 IGHG2P01859 326 aa10.35□□□□□ -0.75
SHMT2-226ENST00000556825 LITAFQ99732 161 aa10.35□□□□□ -0.75
SHMT2-226ENST00000556825 ARRDC1-AS1Q9H2J1 176 aa10.35□□□□□ -0.75
SHMT2-226ENST00000556825 IGHV7-4-1A0A0J9YVY3 117 aa10.35□□□□□ -0.75
SHMT2-226ENST00000556825 RNF223E7ERA6 249 aa10.35□□□□□ -0.75
SHMT2-226ENST00000556825 IGLV2-23P01705 113 aa10.35□□□□□ -0.75
SHMT2-226ENST00000556825 RFPL3SP0C7P2 107 aa10.35□□□□□ -0.75
SHMT2-226ENST00000556825 Q6ZSV7 163 aa10.35□□□□□ -0.75
SHMT2-226ENST00000556825 APRG1Q8IVJ8 170 aa10.35□□□□□ -0.75
SHMT2-226ENST00000556825 PIEZO1Q92508 2521 aa10.34□□□□□ -0.75
SHMT2-226ENST00000556825 IGKV1-17P01599 117 aa10.34□□□□□ -0.75
SHMT2-226ENST00000556825 SPANXN1Q5VSR9 72 aa10.34□□□□□ -0.75
SHMT2-226ENST00000556825 NUP37Q8NFH4 326 aa10.34□□□□□ -0.75
SHMT2-226ENST00000556825 ZNRD1Q9P1U0 126 aa10.34□□□□□ -0.75
SHMT2-226ENST00000556825 FRYLO94915 3013 aa10.34□□□□□ -0.75
SHMT2-226ENST00000556825 BAALC-AS2P0C853 105 aa10.34□□□□□ -0.75
SHMT2-226ENST00000556825 RBMY1BA6NDE4 496 aaKnown RBP10.33□□□□□ -0.76
SHMT2-226ENST00000556825 RBMY1EA6NEQ0 496 aaKnown RBP10.33□□□□□ -0.76
SHMT2-226ENST00000556825 RBMY1DP0C7P1 496 aaKnown RBP10.33□□□□□ -0.76
SHMT2-226ENST00000556825 RBMY1A1P0DJD3 496 aaKnown RBP10.33□□□□□ -0.76
SHMT2-226ENST00000556825 RBMY1CP0DJD4 496 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 XCL1P47992 114 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 PMAIP1Q13794 54 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 RBMY1FQ15415 496 aaKnown RBP10.33□□□□□ -0.76
SHMT2-226ENST00000556825 FAM222AQ5U5X8 452 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 TMEM61Q8N0U2 210 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 COPS9Q8WXC6 57 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 RPL39LQ96EH5 51 aaKnown RBP10.33□□□□□ -0.76
SHMT2-226ENST00000556825 XCL2Q9UBD3 114 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 C22orf24Q9Y442 160 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 SRRM5B3KS81 715 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 TMEM30BQ3MIR4 351 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 RNASE6Q93091 150 aaKnown RBP10.33□□□□□ -0.76
SHMT2-226ENST00000556825 IMMP1LQ96LU5 166 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 TIMM17AQ99595 171 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 UBE2D4Q9Y2X8 147 aa10.33□□□□□ -0.76
SHMT2-226ENST00000556825 FREM1Q5H8C1 2179 aa10.32□□□□□ -0.76
SHMT2-226ENST00000556825 M0R1W7 72 aa10.32□□□□□ -0.76
SHMT2-226ENST00000556825 CD59P13987 128 aa10.32□□□□□ -0.76
SHMT2-226ENST00000556825 CIRBPQ14011 172 aaKnown RBP10.32□□□□□ -0.76
SHMT2-226ENST00000556825 MRGPRG-AS1Q2M3A8 158 aa10.32□□□□□ -0.76
SHMT2-226ENST00000556825 H7BZZ5 65 aa10.31□□□□□ -0.76
SHMT2-226ENST00000556825 M0R381 172 aa10.31□□□□□ -0.76
SHMT2-226ENST00000556825 MAGEA5P43359 124 aa10.31□□□□□ -0.76
SHMT2-226ENST00000556825 LINC00574Q9H8X3 128 aa10.31□□□□□ -0.76
SHMT2-226ENST00000556825 C11orf21Q9P2W6 132 aa10.31□□□□□ -0.76
SHMT2-226ENST00000556825 SDK2Q58EX2 2172 aa10.31□□□□□ -0.76
SHMT2-226ENST00000556825 TRAV12-3A0A0B4J271 114 aa10.31□□□□□ -0.76
SHMT2-226ENST00000556825 COX7A2LO14548 114 aa10.31□□□□□ -0.76
SHMT2-226ENST00000556825 C20orf197Q8N268 126 aa10.31□□□□□ -0.76
SHMT2-226ENST00000556825 COL27A1Q8IZC6 1860 aaPredicted RBP10.31□□□□□ -0.76
SHMT2-226ENST00000556825 I3L2K1 104 aa10.3□□□□□ -0.76
SHMT2-226ENST00000556825 GHRHP01286 108 aa10.3□□□□□ -0.76
SHMT2-226ENST00000556825 BEAN1Q3B7T3 259 aa10.3□□□□□ -0.76
SHMT2-226ENST00000556825 LYPD5Q6UWN5 251 aa10.3□□□□□ -0.76
SHMT2-226ENST00000556825 RETNQ9HD89 108 aa10.3□□□□□ -0.76
SHMT2-226ENST00000556825 DSCAMO60469 2012 aa10.3□□□□□ -0.76
SHMT2-226ENST00000556825 BDP1A6H8Y1 2624 aa10.3□□□□□ -0.76
SHMT2-226ENST00000556825 LOXP28300 417 aaPredicted RBP10.3□□□□□ -0.76
SHMT2-226ENST00000556825 FOLR3P41439 243 aa10.3□□□□□ -0.76
SHMT2-226ENST00000556825 RPL27AP46776 148 aaKnown RBP10.3□□□□□ -0.76
SHMT2-226ENST00000556825 MIAQ16674 131 aa10.3□□□□□ -0.76
SHMT2-226ENST00000556825 NAV3Q8IVL0 2385 aa10.3□□□□□ -0.76
SHMT2-226ENST00000556825 PPP1R17O96001 155 aa10.29□□□□□ -0.76
SHMT2-226ENST00000556825 ADAMTSL4-AS1Q5T5F5 129 aa10.29□□□□□ -0.76
SHMT2-226ENST00000556825 FANCD2OSQ96PS1 177 aa10.29□□□□□ -0.76
SHMT2-226ENST00000556825 MUC3AQ02505 3323 aa10.29□□□□□ -0.76
SHMT2-226ENST00000556825 IGHV3-64A0A075B6Q5 118 aa10.28□□□□□ -0.76
SHMT2-226ENST00000556825 TMEM89A2RUT3 159 aa10.28□□□□□ -0.76
SHMT2-226ENST00000556825 ZNF561-AS1K7EIQ3 104 aa10.28□□□□□ -0.76
SHMT2-226ENST00000556825 APELAP0DMC3 54 aa10.28□□□□□ -0.76
SHMT2-226ENST00000556825 PLA2G2CQ5R387 149 aa10.28□□□□□ -0.76
SHMT2-226ENST00000556825 LINC00474Q9P2X8 69 aa10.28□□□□□ -0.76
SHMT2-226ENST00000556825 VSIG2Q96IQ7 327 aa10.27□□□□□ -0.76
SHMT2-226ENST00000556825 DNAL4O96015 105 aa10.27□□□□□ -0.77
SHMT2-226ENST00000556825 FREM2Q5SZK8 3169 aa10.27□□□□□ -0.77
SHMT2-226ENST00000556825 C1orf158Q8N1D5 194 aa10.26□□□□□ -0.77
SHMT2-226ENST00000556825 RPL39P62891 51 aaKnown RBP10.26□□□□□ -0.77
SHMT2-226ENST00000556825 CD164Q04900 197 aa10.26□□□□□ -0.77
SHMT2-226ENST00000556825 IGFL2Q6UWQ7 119 aa10.26□□□□□ -0.77
SHMT2-226ENST00000556825 LINC00846Q9NV44 126 aa10.26□□□□□ -0.77
SHMT2-226ENST00000556825 GPR179Q6PRD1 2367 aa10.25□□□□□ -0.77
SHMT2-226ENST00000556825 WDFY4Q6ZS81 3184 aa10.25□□□□□ -0.77
SHMT2-226ENST00000556825 Q0VFX4 171 aa10.25□□□□□ -0.77
SHMT2-226ENST00000556825 GPHB5Q86YW7 130 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms