RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 USP9YO00507 2555 aaPredicted RBP1.19□□□□□ -2.22
SCFD1-221ENST00000556534 SCN11AQ9UI33 1791 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 AKAP11Q9UKA4 1901 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 UNC13CQ8NB66 2214 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 IGKV2-40A0A087WW87 121 aaPredicted RBP1.19□□□□□ -2.22
SCFD1-221ENST00000556534 SSC5DA1L4H1 1573 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 H3BMG7 143 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 M0QZK8 103 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 ZNF609O15014 1411 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 IGKV2D-40P01614 121 aaPredicted RBP1.19□□□□□ -2.22
SCFD1-221ENST00000556534 CRYGSP22914 178 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 SDC4P31431 198 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 FOXA3P55318 350 aaPredicted RBP1.19□□□□□ -2.22
SCFD1-221ENST00000556534 MRPS36P82909 103 aaKnown RBP1.19□□□□□ -2.22
SCFD1-221ENST00000556534 FANCMQ8IYD8 2048 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 C10orf105Q8TEF2 133 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 BRK1Q8WUW1 75 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 NAT14Q8WUY8 206 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 TRPM7Q96QT4 1865 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 OR4C12Q96R67 309 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 AIF1LQ9BQI0 150 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 ORMDL1Q9P0S3 153 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 ZFP30Q9Y2G7 519 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 CELSR1Q9NYQ6 3014 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 KIAA1549LQ6ZVL6 1849 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 NHSQ6T4R5 1651 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 OTOGQ6ZRI0 2925 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 COL6A5A8TX70 2615 aa1.19□□□□□ -2.22
SCFD1-221ENST00000556534 TIAM2Q8IVF5 1701 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 A0A1B0GW64 132 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 GEMIN2O14893 280 aaKnown RBP1.18□□□□□ -2.22
SCFD1-221ENST00000556534 CCL25O15444 150 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 RPL22P35268 128 aaKnown RBP1.18□□□□□ -2.22
SCFD1-221ENST00000556534 MAXP61244 160 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 MPV17LQ2QL34 196 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 FAM19A2Q8N3H0 131 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 CLEC2BQ92478 149 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 FKBP11Q9NYL4 201 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 TPRKBQ9Y3C4 175 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 LMO7Q8WWI1 1683 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 NCOA6Q14686 2063 aaPredicted RBP1.18□□□□□ -2.22
SCFD1-221ENST00000556534 MED23Q9ULK4 1368 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 EIF2AK4Q9P2K8 1649 aaKnown RBP1.18□□□□□ -2.22
SCFD1-221ENST00000556534 ANK1P16157 1881 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 PRXQ9BXM0 1461 aa1.18□□□□□ -2.22
SCFD1-221ENST00000556534 BTAF1O14981 1849 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 ATMQ13315 3056 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 MUC4Q99102 2169 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 E9PCH4 1651 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 CTTNBP2Q8WZ74 1663 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 MGAQ8IWI9 3026 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 TRBV6-7A0A0A0MS04 114 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 ZNF25P17030 456 aaPredicted RBP1.17□□□□□ -2.22
SCFD1-221ENST00000556534 KRTAP10-4P60372 401 aaPredicted RBP1.17□□□□□ -2.22
SCFD1-221ENST00000556534 MIR22HGQ0VDD5 57 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 CIRBPQ14011 172 aaKnown RBP1.17□□□□□ -2.22
SCFD1-221ENST00000556534 FAM74A1Q5RGS3 127 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 ZCCHC23Q6ZST2 131 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 GKN2Q86XP6 184 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 OR8I2Q8N0Y5 310 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 CENPEQ02224 2701 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 ADGRG4Q8IZF6 3080 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 CPDO75976 1380 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 VPS13CQ709C8 3753 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 LAMA1P25391 3075 aa1.17□□□□□ -2.22
SCFD1-221ENST00000556534 DSPPQ9NZW4 1301 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 C5orf58C9J3I9 102 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 C9JAW5 83 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 F8W1H4 67 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 NUPR1O60356 82 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 TNFSF15O95150 251 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 DIAPH2-AS1Q14236 149 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 FOXI2Q6ZQN5 318 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 OR5A2Q8NGI9 324 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 OR51A4Q8NGJ6 313 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 BORCS5Q969J3 196 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 NABP2Q9BQ15 211 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 SPANXA1Q9NS26 97 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 HIGD1AQ9Y241 93 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 VWFP04275 2813 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 UTP20O75691 2785 aaKnown RBP1.16□□□□□ -2.22
SCFD1-221ENST00000556534 ANKHD1Q8IWZ3 2542 aaKnown RBP1.16□□□□□ -2.22
SCFD1-221ENST00000556534 CDK5RAP2Q96SN8 1893 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 AKAP13Q12802 2813 aa1.16□□□□□ -2.22
SCFD1-221ENST00000556534 TECTAO75443 2155 aa1.15□□□□□ -2.22
SCFD1-221ENST00000556534 NAIPQ13075 1403 aa1.15□□□□□ -2.22
SCFD1-221ENST00000556534 LY75O60449 1722 aa1.15□□□□□ -2.22
SCFD1-221ENST00000556534 ITSN1Q15811 1721 aa1.15□□□□□ -2.22
SCFD1-221ENST00000556534 HIVEP1P15822 2718 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 CELSR2Q9HCU4 2923 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 DPM2O94777 84 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 DNAL4O96015 105 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 TRACP01848 142 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 MT-ND4LP03901 98 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 SCTP09683 121 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 TPT1P13693 172 aaKnown RBP1.15□□□□□ -2.23
SCFD1-221ENST00000556534 COX7CP15954 63 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 SRP9P49458 86 aaKnown RBP1.15□□□□□ -2.23
SCFD1-221ENST00000556534 CCDC153Q494R4 210 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 GDF5OSQ5U4N7 250 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms