RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 PTPRMP28827 1452 aa3.65□□□□□ -1.83
VPS29-210ENST00000552130 SMARCA4P51532 1647 aa3.64□□□□□ -1.83
VPS29-210ENST00000552130 CXorf51AA0A1B0GTR3 108 aa3.64□□□□□ -1.83
VPS29-210ENST00000552130 TFF1P04155 84 aa3.64□□□□□ -1.83
VPS29-210ENST00000552130 HRES1P13985 223 aa3.64□□□□□ -1.83
VPS29-210ENST00000552130 MPV17LQ2QL34 196 aa3.64□□□□□ -1.83
VPS29-210ENST00000552130 PYDC2Q56P42 97 aa3.64□□□□□ -1.83
VPS29-210ENST00000552130 Q6ZTI0 123 aa3.64□□□□□ -1.83
VPS29-210ENST00000552130 CDC42SE1Q9NRR8 79 aa3.64□□□□□ -1.83
VPS29-210ENST00000552130 PXDNQ92626 1479 aa3.64□□□□□ -1.83
VPS29-210ENST00000552130 CDK12Q9NYV4 1490 aaPredicted RBP3.64□□□□□ -1.83
VPS29-210ENST00000552130 EPRSP07814 1512 aaKnown RBP3.64□□□□□ -1.83
VPS29-210ENST00000552130 RGPD4Q7Z3J3 1758 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 MICAL3Q7RTP6 2002 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 PLXNA4Q9HCM2 1894 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 A0A1W2PPM0 123 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 TMEM30CPA0ZSE6 113 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 SYS1-DBNDD2H3BUS1 97 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 IGLC2P0DOY2 106 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 IGLC3P0DOY3 106 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 PDE6HQ13956 83 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 IGFBP7Q16270 282 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 ETDBQ3ZM63 59 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 LYPD1Q8N2G4 141 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 S100ZQ8WXG8 99 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 NXT2Q9NPJ8 142 aaKnown RBP3.63□□□□□ -1.83
VPS29-210ENST00000552130 STRCQ7RTU9 1775 aa3.63□□□□□ -1.83
VPS29-210ENST00000552130 C22orf24Q9Y442 160 aa3.62□□□□□ -1.83
VPS29-210ENST00000552130 KIAA1549LQ6ZVL6 1849 aa3.62□□□□□ -1.83
VPS29-210ENST00000552130 TNS1Q9HBL0 1735 aaKnown RBP3.61□□□□□ -1.83
VPS29-210ENST00000552130 FANCAO15360 1455 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 NLRP1Q9C000 1473 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 COL11A1P12107 1806 aaPredicted RBP3.61□□□□□ -1.83
VPS29-210ENST00000552130 DISP1Q96F81 1524 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 MYO16Q9Y6X6 1858 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 TRBV7-1A0A0A6YYK4 115 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 SIX6O95475 246 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 CFDP00746 253 aaPredicted RBP3.61□□□□□ -1.83
VPS29-210ENST00000552130 IGHV3-33P01772 117 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 WFDC2Q14508 124 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 DEFB134Q4QY38 66 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 C1orf137Q5JT78 98 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 BVES-AS1Q5T3Y7 98 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 LYPD5Q6UWN5 251 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 LINC00167Q96N53 147 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 CCL26Q9Y258 94 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 PTPRDP23468 1912 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 TCHHQ07283 1943 aa3.61□□□□□ -1.83
VPS29-210ENST00000552130 DIP2BQ9P265 1576 aa3.6□□□□□ -1.83
VPS29-210ENST00000552130 CTSGP08311 255 aa3.6□□□□□ -1.83
VPS29-210ENST00000552130 CNBPP62633 177 aaKnown RBP3.6□□□□□ -1.83
VPS29-210ENST00000552130 NMSQ5H8A3 153 aa3.6□□□□□ -1.83
VPS29-210ENST00000552130 NDUFA11Q86Y39 141 aa3.6□□□□□ -1.83
VPS29-210ENST00000552130 Q8N9L7 120 aa3.6□□□□□ -1.83
VPS29-210ENST00000552130 IFI27L1Q96BM0 104 aa3.6□□□□□ -1.83
VPS29-210ENST00000552130 CYSTM1Q9H1C7 97 aa3.6□□□□□ -1.83
VPS29-210ENST00000552130 SEC16AO15027 2179 aa3.6□□□□□ -1.83
VPS29-210ENST00000552130 KIAA0100Q14667 2235 aaKnown RBP3.6□□□□□ -1.83
VPS29-210ENST00000552130 MYOFQ9NZM1 2061 aa3.59□□□□□ -1.83
VPS29-210ENST00000552130 NUMA1Q14980 2115 aa3.59□□□□□ -1.83
VPS29-210ENST00000552130 MED13Q9UHV7 2174 aa3.59□□□□□ -1.83
VPS29-210ENST00000552130 MUC22E2RYF6 1773 aaPredicted RBP3.59□□□□□ -1.83
VPS29-210ENST00000552130 TRAV12-3A0A0B4J271 114 aa3.59□□□□□ -1.83
VPS29-210ENST00000552130 CYP2G1PQ6ZSU1 146 aa3.59□□□□□ -1.83
VPS29-210ENST00000552130 MANBALQ9NQG1 85 aa3.59□□□□□ -1.83
VPS29-210ENST00000552130 CASP8AP2Q9UKL3 1982 aa3.59□□□□□ -1.83
VPS29-210ENST00000552130 MYO18AQ92614 2054 aaKnown RBP3.59□□□□□ -1.83
VPS29-210ENST00000552130 HEATR1Q9H583 2144 aaKnown RBP3.59□□□□□ -1.84
VPS29-210ENST00000552130 SHANK2Q9UPX8 1470 aa3.59□□□□□ -1.84
VPS29-210ENST00000552130 ZC3H13Q5T200 1668 aaKnown RBP3.59□□□□□ -1.84
VPS29-210ENST00000552130 SUPT6HQ7KZ85 1726 aaKnown RBP3.58□□□□□ -1.84
VPS29-210ENST00000552130 RGPD3A6NKT7 1758 aaPredicted RBP3.58□□□□□ -1.84
VPS29-210ENST00000552130 LAMB1P07942 1786 aa3.58□□□□□ -1.84
VPS29-210ENST00000552130 MOBPQ13875 183 aa3.58□□□□□ -1.84
VPS29-210ENST00000552130 ELOBQ15370 118 aa3.58□□□□□ -1.84
VPS29-210ENST00000552130 LCE3AQ5TA76 89 aa3.58□□□□□ -1.84
VPS29-210ENST00000552130 CSAG1Q6PB30 78 aa3.58□□□□□ -1.84
VPS29-210ENST00000552130 SH2D6Q7Z4S9 175 aa3.58□□□□□ -1.84
VPS29-210ENST00000552130 EDC4Q6P2E9 1401 aaKnown RBP3.58□□□□□ -1.84
VPS29-210ENST00000552130 ANKARQ7Z5J8 1434 aa3.58□□□□□ -1.84
VPS29-210ENST00000552130 SLIT2O94813 1529 aa3.58□□□□□ -1.84
VPS29-210ENST00000552130 THOC2Q8NI27 1593 aaKnown RBP3.58□□□□□ -1.84
VPS29-210ENST00000552130 TRBV10-1A0A0K0K1A3 114 aa3.57□□□□□ -1.84
VPS29-210ENST00000552130 COL1A2P08123 1366 aa3.57□□□□□ -1.84
VPS29-210ENST00000552130 SHROOM2Q13796 1616 aa3.57□□□□□ -1.84
VPS29-210ENST00000552130 C4orf3Q8WVX3 66 aa3.57□□□□□ -1.84
VPS29-210ENST00000552130 KIF14Q15058 1648 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 ATP10BO94823 1461 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 MLH3Q9UHC1 1453 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 IGLV4-60A0A075B6I1 120 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 KANTRA0A1W2PQU2 76 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 C10orf128Q5T292 105 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 ZNF818PQ6ZRF7 136 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 TIMM21Q9BVV7 248 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 HIGD1BQ9P298 99 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 MPDZO75970 2070 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 PATJQ8NI35 1801 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 LAMB2P55268 1798 aa3.56□□□□□ -1.84
VPS29-210ENST00000552130 NCOA2Q15596 1464 aa3.55□□□□□ -1.84
VPS29-210ENST00000552130 IGKV2D-24A0A075B6R9 120 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms