RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ATXN8Q156A1 80 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 TMEM86BQ8N661 226 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 NRACQ8N912 160 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 ODF3Q96PU9 254 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 A0A0A0MQY5 61 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.02□□□□□ -1.77
USP28-213ENST00000544967 J3KT08 172 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 TNP2Q05952 138 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 MEIG1Q5JSS6 88 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 SLC25A29Q8N8R3 303 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 PRR25Q96S07 402 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 SLC50A1Q9BRV3 221 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 MRPL36Q9P0J6 103 aaKnown RBP4.02□□□□□ -1.77
USP28-213ENST00000544967 PRO1854Q9UHT4 67 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 ABCA2Q9BZC7 2435 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 ITPR2Q14571 2701 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 ICE1Q9Y2F5 2266 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 TRAV8-1A0A0A6YYK1 113 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 TRAV4A0A0B4J268 109 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 TRBV30A0A0K0K1B3 111 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 IGHV3-30P01768 117 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 IGHV3-30-5P0DP03 117 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 CXCL5P42830 114 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 TNFAIP6P98066 277 aaPredicted RBP4.02□□□□□ -1.77
USP28-213ENST00000544967 EBI3Q14213 229 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 MRGPRG-AS1Q2M3A8 158 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 PRR26Q8N8Z3 221 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 ZNRF2Q8NHG8 242 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 TACC2O95359 2948 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 TRAV8-2A0A0B4J237 113 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 A0A0J9YY99 117 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 TMEM178BH3BS89 294 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 UQCRQO14949 82 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 HOXA4Q00056 320 aaPredicted RBP4.01□□□□□ -1.77
USP28-213ENST00000544967 ERCC8Q13216 396 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 C11orf45Q8TAV5 145 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 TMEM101Q96IK0 257 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 TTTY13Q9BZ97 58 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 PKIGQ9Y2B9 76 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 CENPEQ02224 2701 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 NBASA2RRP1 2371 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 I3L2K1 104 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 ELANEP08246 267 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 MED14OSP0DP75 135 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 RPL7P18124 248 aaKnown RBP4.01□□□□□ -1.77
USP28-213ENST00000544967 PPIFP30405 207 aaKnown RBP4.01□□□□□ -1.77
USP28-213ENST00000544967 SDIM1Q6ZPB5 146 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 TMEM219Q86XT9 240 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 EXOC3-AS1Q8N2X6 119 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 POM121L12Q8N7R1 296 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 LY6G5BQ8NDX9 201 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 LINC00526Q96FQ7 95 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 SGK494Q96LW2 274 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 SPTAN1Q13813 2472 aaKnown RBP4.01□□□□□ -1.77
USP28-213ENST00000544967 ABCA12Q86UK0 2595 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 LOC107984156A0A0G2JMH3 177 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 C11orf86A6NJI1 115 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 TIMM23O14925 209 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 RPL27AP46776 148 aaKnown RBP4.01□□□□□ -1.77
USP28-213ENST00000544967 DLX6P56179 175 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 LMO4P61968 165 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 KRTAP21-3Q3LHN1 58 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 C9orf139Q6ZV77 190 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 ZNF575Q86XF7 245 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 ARL17AQ8IVW1 177 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 C15orf53Q8NAA6 179 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 OR13C6PQ8NH95 151 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 GAFA1Q96PS6 74 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 PRADC1Q9BSG0 188 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 SMIM2Q9BVW6 85 aa4.01□□□□□ -1.77
USP28-213ENST00000544967 ZNF815PA8K554 130 aa4□□□□□ -1.77
USP28-213ENST00000544967 H3BMM0 161 aa4□□□□□ -1.77
USP28-213ENST00000544967 CFC1BP0CG36 223 aa4□□□□□ -1.77
USP28-213ENST00000544967 CFC1P0CG37 223 aa4□□□□□ -1.77
USP28-213ENST00000544967 EGR2P11161 476 aaPredicted RBP4□□□□□ -1.77
USP28-213ENST00000544967 ZFP2Q6ZN57 461 aa4□□□□□ -1.77
USP28-213ENST00000544967 FAM19A5Q7Z5A7 132 aaPredicted RBP4□□□□□ -1.77
USP28-213ENST00000544967 C3orf22Q8N5N4 141 aa4□□□□□ -1.77
USP28-213ENST00000544967 UBE2WQ96B02 151 aa4□□□□□ -1.77
USP28-213ENST00000544967 TRAV2A0A0B4J234 112 aa4□□□□□ -1.77
USP28-213ENST00000544967 SPRY3O43610 288 aa4□□□□□ -1.77
USP28-213ENST00000544967 IGHV3-33P01772 117 aa4□□□□□ -1.77
USP28-213ENST00000544967 CRYGDP07320 174 aa4□□□□□ -1.77
USP28-213ENST00000544967 TMEM141Q96I45 108 aa4□□□□□ -1.77
USP28-213ENST00000544967 C20orf173Q96LM9 149 aa4□□□□□ -1.77
USP28-213ENST00000544967 KIR2DL4Q99706 377 aa4□□□□□ -1.77
USP28-213ENST00000544967 RNF7Q9UBF6 113 aa4□□□□□ -1.77
USP28-213ENST00000544967 DOPEY2Q9Y3R5 2298 aa4□□□□□ -1.77
USP28-213ENST00000544967 DIDO1Q9BTC0 2240 aaKnown RBP4□□□□□ -1.77
USP28-213ENST00000544967 SDHAF1A6NFY7 115 aa4□□□□□ -1.77
USP28-213ENST00000544967 E7EUB6 86 aa4□□□□□ -1.77
USP28-213ENST00000544967 SRSF9Q13242 221 aaKnown RBP eCLIP4□□□□□ -1.77
USP28-213ENST00000544967 TMEM263Q8WUH6 116 aaKnown RBP4□□□□□ -1.77
USP28-213ENST00000544967 C8orf49Q96NF6 230 aa4□□□□□ -1.77
USP28-213ENST00000544967 TP53TG1Q9Y2A0 90 aa4□□□□□ -1.77
USP28-213ENST00000544967 IGKV1-17P01599 117 aa3.99□□□□□ -1.77
USP28-213ENST00000544967 CRYGAP11844 174 aa3.99□□□□□ -1.77
USP28-213ENST00000544967 LYZP61626 148 aa3.99□□□□□ -1.77
USP28-213ENST00000544967 C1orf195Q5TG92 126 aa3.99□□□□□ -1.77
USP28-213ENST00000544967 TPSG1Q9NRR2 321 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms