RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NEGR1Q7Z3B1 354 aa12.08□□□□□ -0.48
COL4A1-204ENST00000543140 TEX29Q8N6K0 151 aa12.08□□□□□ -0.48
COL4A1-204ENST00000543140 GCN1Q92616 2671 aaKnown RBP12.08□□□□□ -0.48
COL4A1-204ENST00000543140 IGHV1OR15-1A0A075B7D0 117 aa12.08□□□□□ -0.48
COL4A1-204ENST00000543140 DYNLRB2Q8TF09 96 aa12.08□□□□□ -0.48
COL4A1-204ENST00000543140 C20orf78Q9BR46 151 aa12.07□□□□□ -0.48
COL4A1-204ENST00000543140 C9orf85Q96MD7 179 aa12.07□□□□□ -0.48
COL4A1-204ENST00000543140 ATP5LO75964 103 aa12.06□□□□□ -0.48
COL4A1-204ENST00000543140 RBMY1A1P0DJD3 496 aaKnown RBP12.06□□□□□ -0.48
COL4A1-204ENST00000543140 RBMY1CP0DJD4 496 aa12.06□□□□□ -0.48
COL4A1-204ENST00000543140 RBMY1FQ15415 496 aaKnown RBP12.06□□□□□ -0.48
COL4A1-204ENST00000543140 CSTL1Q9H114 145 aa12.06□□□□□ -0.48
COL4A1-204ENST00000543140 CD28P10747 220 aa12.06□□□□□ -0.48
COL4A1-204ENST00000543140 SUMO4Q6EEV6 95 aa12.06□□□□□ -0.48
COL4A1-204ENST00000543140 RAX2Q96IS3 184 aa12.06□□□□□ -0.48
COL4A1-204ENST00000543140 HECTD1Q9ULT8 2610 aa12.05□□□□□ -0.48
COL4A1-204ENST00000543140 PRM2P04554 102 aa12.05□□□□□ -0.48
COL4A1-204ENST00000543140 NMUP48645 174 aa12.05□□□□□ -0.48
COL4A1-204ENST00000543140 CD300EQ496F6 205 aaPredicted RBP12.05□□□□□ -0.48
COL4A1-204ENST00000543140 FGF6P10767 208 aa12.05□□□□□ -0.48
COL4A1-204ENST00000543140 GAGE1Q13065 139 aa12.05□□□□□ -0.48
COL4A1-204ENST00000543140 DEFB114Q30KQ6 69 aa12.05□□□□□ -0.48
COL4A1-204ENST00000543140 CBY3A6NI87 242 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 H3BMM0 161 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 C21orf62-AS1Q17RA5 79 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 ORMDL2Q53FV1 153 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 C2orf91Q6ZV80 131 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 POM121L12Q8N7R1 296 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 RBMY1BA6NDE4 496 aaKnown RBP12.04□□□□□ -0.48
COL4A1-204ENST00000543140 RBMY1EA6NEQ0 496 aaKnown RBP12.04□□□□□ -0.48
COL4A1-204ENST00000543140 CCL25O15444 150 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 RBMY1DP0C7P1 496 aaKnown RBP12.04□□□□□ -0.48
COL4A1-204ENST00000543140 HLA-DRB4P13762 266 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 PCP2Q8IVA1 136 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 TMEM160Q9NX00 188 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 MRPL35Q9NZE8 188 aaKnown RBP12.04□□□□□ -0.48
COL4A1-204ENST00000543140 HHLA3Q9XRX5 114 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 HLA-DRB4X5D2U9 266 aa12.04□□□□□ -0.48
COL4A1-204ENST00000543140 NIPBLQ6KC79 2804 aaeCLIP12.04□□□□□ -0.48
COL4A1-204ENST00000543140 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.03□□□□□ -0.48
COL4A1-204ENST00000543140 IGKCP01834 107 aa12.03□□□□□ -0.48
COL4A1-204ENST00000543140 ZMAT4Q9H898 229 aa12.03□□□□□ -0.48
COL4A1-204ENST00000543140 SCGB3A1Q96QR1 104 aa12.03□□□□□ -0.48
COL4A1-204ENST00000543140 MAP6D1Q9H9H5 199 aa12.03□□□□□ -0.48
COL4A1-204ENST00000543140 PPP1R17O96001 155 aa12.02□□□□□ -0.48
COL4A1-204ENST00000543140 ZNF876PQ49A33 203 aa12.02□□□□□ -0.48
COL4A1-204ENST00000543140 BVES-AS1Q5T3Y7 98 aa12.02□□□□□ -0.48
COL4A1-204ENST00000543140 SYT8Q8NBV8 401 aa12.02□□□□□ -0.48
COL4A1-204ENST00000543140 CITED2Q99967 270 aaPredicted RBP12.02□□□□□ -0.48
COL4A1-204ENST00000543140 DPM2O94777 84 aa12.02□□□□□ -0.49
COL4A1-204ENST00000543140 ZNF56Q15929 161 aa12.02□□□□□ -0.49
COL4A1-204ENST00000543140 NOTCH2Q04721 2471 aa12.02□□□□□ -0.49
COL4A1-204ENST00000543140 IGKV2D-26A0A0A0MRZ7 120 aa12.01□□□□□ -0.49
COL4A1-204ENST00000543140 C2orf66Q6UXQ4 117 aa12.01□□□□□ -0.49
COL4A1-204ENST00000543140 GTSCR1Q86UQ5 136 aa12.01□□□□□ -0.49
COL4A1-204ENST00000543140 TOMM6Q96B49 74 aa12.01□□□□□ -0.49
COL4A1-204ENST00000543140 CCL24O00175 119 aa12.01□□□□□ -0.49
COL4A1-204ENST00000543140 CRYGDP07320 174 aa12.01□□□□□ -0.49
COL4A1-204ENST00000543140 BOD1L2Q8IYS8 172 aa12.01□□□□□ -0.49
COL4A1-204ENST00000543140 SMR3AQ99954 134 aa12.01□□□□□ -0.49
COL4A1-204ENST00000543140 TTTY13Q9BZ97 58 aa12.01□□□□□ -0.49
COL4A1-204ENST00000543140 ZC2HC1BQ5TFG8 222 aa12□□□□□ -0.49
COL4A1-204ENST00000543140 C12orf54Q6X4T0 127 aa12□□□□□ -0.49
COL4A1-204ENST00000543140 LINC01006Q8NI28 216 aa12□□□□□ -0.49
COL4A1-204ENST00000543140 A0A087WX48 190 aa12□□□□□ -0.49
COL4A1-204ENST00000543140 TRGV11A0A075B6L2 103 aa11.99□□□□□ -0.49
COL4A1-204ENST00000543140 TRAV2A0A0B4J234 112 aa11.99□□□□□ -0.49
COL4A1-204ENST00000543140 PTTG1IPP53801 180 aa11.99□□□□□ -0.49
COL4A1-204ENST00000543140 ZNF256Q9Y2P7 627 aaPredicted RBP11.99□□□□□ -0.49
COL4A1-204ENST00000543140 NOTCH3Q9UM47 2321 aa11.99□□□□□ -0.49
COL4A1-204ENST00000543140 SDHAF1A6NFY7 115 aa11.98□□□□□ -0.49
COL4A1-204ENST00000543140 K7EMI3 77 aa11.98□□□□□ -0.49
COL4A1-204ENST00000543140 POLR2KP53803 58 aaKnown RBP11.98□□□□□ -0.49
COL4A1-204ENST00000543140 HIVEP2P31629 2446 aa11.98□□□□□ -0.49
COL4A1-204ENST00000543140 JMJD1CQ15652 2540 aa11.98□□□□□ -0.49
COL4A1-204ENST00000543140 SETXQ7Z333 2677 aaKnown RBP11.98□□□□□ -0.49
COL4A1-204ENST00000543140 IGHV3-73A0A0B4J1V6 119 aa11.97□□□□□ -0.49
COL4A1-204ENST00000543140 A8MTW9 85 aa11.97□□□□□ -0.49
COL4A1-204ENST00000543140 M0QY20 66 aa11.97□□□□□ -0.49
COL4A1-204ENST00000543140 FHL3Q13643 280 aa11.97□□□□□ -0.49
COL4A1-204ENST00000543140 RNASE1P07998 156 aaKnown RBP11.97□□□□□ -0.49
COL4A1-204ENST00000543140 MORN3Q6PF18 240 aaPredicted RBP11.97□□□□□ -0.49
COL4A1-204ENST00000543140 ZFP2Q6ZN57 461 aa11.97□□□□□ -0.49
COL4A1-204ENST00000543140 RNASE8Q8TDE3 154 aaKnown RBP11.97□□□□□ -0.49
COL4A1-204ENST00000543140 SPAG8Q99932 426 aaPredicted RBP11.97□□□□□ -0.49
COL4A1-204ENST00000543140 COX11Q9Y6N1 276 aa11.97□□□□□ -0.49
COL4A1-204ENST00000543140 VCYO14598 125 aa11.96□□□□□ -0.49
COL4A1-204ENST00000543140 RPL39P62891 51 aaKnown RBP11.96□□□□□ -0.49
COL4A1-204ENST00000543140 KIR2DL4Q99706 377 aa11.96□□□□□ -0.49
COL4A1-204ENST00000543140 ODF3L2Q3SX64 289 aa11.96□□□□□ -0.5
COL4A1-204ENST00000543140 TMEM97Q5BJF2 176 aa11.96□□□□□ -0.5
COL4A1-204ENST00000543140 NEXN-AS1Q8NBZ9 246 aa11.96□□□□□ -0.5
COL4A1-204ENST00000543140 BAALCQ8WXS3 180 aa11.96□□□□□ -0.5
COL4A1-204ENST00000543140 TP53TG1Q9Y2A0 90 aa11.96□□□□□ -0.5
COL4A1-204ENST00000543140 H7C1H1 209 aa11.95□□□□□ -0.5
COL4A1-204ENST00000543140 LINC01587Q99440 93 aa11.95□□□□□ -0.5
COL4A1-204ENST00000543140 CHTOPQ9Y3Y2 248 aaKnown RBP11.95□□□□□ -0.5
COL4A1-204ENST00000543140 TSSC4Q9Y5U2 329 aaPredicted RBP11.95□□□□□ -0.5
COL4A1-204ENST00000543140 F8VRH5 84 aa11.95□□□□□ -0.5
COL4A1-204ENST00000543140 CYSLTR1Q9Y271 337 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms