RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 A0A096LNT2 108 aa12.59□□□□□ -0.39
USP28-208ENST00000540438 DPM2O94777 84 aa12.59□□□□□ -0.39
USP28-208ENST00000540438 C2orf66Q6UXQ4 117 aa12.59□□□□□ -0.39
USP28-208ENST00000540438 MTURNQ8N3F0 131 aa12.59□□□□□ -0.39
USP28-208ENST00000540438 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.59□□□□□ -0.39
USP28-208ENST00000540438 WFDC11Q8NEX6 87 aa12.59□□□□□ -0.39
USP28-208ENST00000540438 IGHV3OR16-12A0A075B7B8 117 aa12.59□□□□□ -0.39
USP28-208ENST00000540438 DEFB131AP59861 70 aa12.59□□□□□ -0.39
USP28-208ENST00000540438 SRSF2Q01130 221 aaKnown RBP12.59□□□□□ -0.39
USP28-208ENST00000540438 CD300EQ496F6 205 aaPredicted RBP12.59□□□□□ -0.39
USP28-208ENST00000540438 KLHL30-AS1Q8NEE0 82 aa12.59□□□□□ -0.39
USP28-208ENST00000540438 IGHV3-64A0A075B6Q5 118 aa12.58□□□□□ -0.4
USP28-208ENST00000540438 ID1P41134 155 aa12.58□□□□□ -0.4
USP28-208ENST00000540438 SUMO4Q6EEV6 95 aa12.58□□□□□ -0.4
USP28-208ENST00000540438 ADAMTSL5Q6ZMM2 481 aa12.58□□□□□ -0.4
USP28-208ENST00000540438 OR11H1Q8NG94 326 aa12.58□□□□□ -0.4
USP28-208ENST00000540438 ZNF702PQ9H963 129 aa12.58□□□□□ -0.4
USP28-208ENST00000540438 NHP2Q9NX24 153 aaKnown RBP12.58□□□□□ -0.4
USP28-208ENST00000540438 VPREB3Q9UKI3 123 aa12.58□□□□□ -0.4
USP28-208ENST00000540438 TRBV25-1A0A075B6N4 114 aa12.57□□□□□ -0.4
USP28-208ENST00000540438 AP1S3Q96PC3 154 aa12.57□□□□□ -0.4
USP28-208ENST00000540438 RNASE13Q5GAN3 156 aaKnown RBP12.57□□□□□ -0.4
USP28-208ENST00000540438 SLC25A16P16260 332 aa12.56□□□□□ -0.4
USP28-208ENST00000540438 PRSS29PA6NIE9 313 aa12.56□□□□□ -0.4
USP28-208ENST00000540438 RBMY1A1P0DJD3 496 aaKnown RBP12.56□□□□□ -0.4
USP28-208ENST00000540438 RBMY1CP0DJD4 496 aa12.56□□□□□ -0.4
USP28-208ENST00000540438 RBMY1FQ15415 496 aaKnown RBP12.56□□□□□ -0.4
USP28-208ENST00000540438 SNRPD3P62318 126 aaKnown RBP12.56□□□□□ -0.4
USP28-208ENST00000540438 CHAC1Q9BUX1 264 aa12.56□□□□□ -0.4
USP28-208ENST00000540438 TP53TG1Q9Y2A0 90 aa12.56□□□□□ -0.4
USP28-208ENST00000540438 CHTOPQ9Y3Y2 248 aaKnown RBP12.55□□□□□ -0.4
USP28-208ENST00000540438 A0A0J9YX75 114 aa12.54□□□□□ -0.4
USP28-208ENST00000540438 ZNF876PQ49A33 203 aa12.54□□□□□ -0.4
USP28-208ENST00000540438 H3BUA1 57 aa12.54□□□□□ -0.4
USP28-208ENST00000540438 FAM19A4Q96LR4 140 aa12.54□□□□□ -0.4
USP28-208ENST00000540438 CYSLTR1Q9Y271 337 aa12.54□□□□□ -0.4
USP28-208ENST00000540438 OTOGQ6ZRI0 2925 aa12.54□□□□□ -0.4
USP28-208ENST00000540438 IGHV3-16A0A0C4DH30 117 aa12.54□□□□□ -0.4
USP28-208ENST00000540438 KLLNB2CW77 178 aa12.54□□□□□ -0.4
USP28-208ENST00000540438 LINC00315P59091 139 aa12.54□□□□□ -0.4
USP28-208ENST00000540438 PDZD2O15018 2839 aa12.53□□□□□ -0.4
USP28-208ENST00000540438 SDHAF1A6NFY7 115 aa12.53□□□□□ -0.4
USP28-208ENST00000540438 ATP5LO75964 103 aa12.53□□□□□ -0.4
USP28-208ENST00000540438 CEMP1Q6PRD7 247 aaPredicted RBP12.53□□□□□ -0.4
USP28-208ENST00000540438 TMEM61Q8N0U2 210 aa12.53□□□□□ -0.4
USP28-208ENST00000540438 GAGE10A6NGK3 116 aa12.53□□□□□ -0.4
USP28-208ENST00000540438 BAALCQ8WXS3 180 aa12.53□□□□□ -0.4
USP28-208ENST00000540438 IGHV4-4A0A075B6R2 117 aa12.52□□□□□ -0.4
USP28-208ENST00000540438 A0A087WX48 190 aa12.52□□□□□ -0.4
USP28-208ENST00000540438 Q6YL49 198 aa12.52□□□□□ -0.4
USP28-208ENST00000540438 MRAP2Q96G30 205 aa12.52□□□□□ -0.4
USP28-208ENST00000540438 K7EQG2 157 aa12.52□□□□□ -0.41
USP28-208ENST00000540438 SAP30O75446 220 aa12.52□□□□□ -0.41
USP28-208ENST00000540438 DLX4Q92988 240 aaPredicted RBP12.52□□□□□ -0.41
USP28-208ENST00000540438 LENEPQ9Y5L5 61 aa12.52□□□□□ -0.41
USP28-208ENST00000540438 LGALS1P09382 135 aaKnown RBP12.51□□□□□ -0.41
USP28-208ENST00000540438 OR1N2Q8NGR9 330 aa12.51□□□□□ -0.41
USP28-208ENST00000540438 CDKN1BP46527 198 aa12.51□□□□□ -0.41
USP28-208ENST00000540438 DEFB113Q30KQ7 82 aa12.51□□□□□ -0.41
USP28-208ENST00000540438 HSD52Q0P140 79 aa12.51□□□□□ -0.41
USP28-208ENST00000540438 UBE2E2Q96LR5 201 aa12.51□□□□□ -0.41
USP28-208ENST00000540438 KIF25-AS1Q9Y6Z4 181 aa12.51□□□□□ -0.41
USP28-208ENST00000540438 GAGE12BA1L429 117 aa12.5□□□□□ -0.41
USP28-208ENST00000540438 HIST1H4GQ99525 98 aa12.5□□□□□ -0.41
USP28-208ENST00000540438 ZMAT4Q9H898 229 aa12.5□□□□□ -0.41
USP28-208ENST00000540438 TENM1Q9UKZ4 2725 aa12.5□□□□□ -0.41
USP28-208ENST00000540438 FLNBO75369 2602 aaKnown RBP12.5□□□□□ -0.41
USP28-208ENST00000540438 ATRQ13535 2644 aa12.5□□□□□ -0.41
USP28-208ENST00000540438 IGHV3-38A0A0C4DH36 116 aa12.5□□□□□ -0.41
USP28-208ENST00000540438 TSHBP01222 138 aa12.5□□□□□ -0.41
USP28-208ENST00000540438 SCGB2A2Q13296 93 aa12.5□□□□□ -0.41
USP28-208ENST00000540438 AMTNQ6UX39 209 aa12.49□□□□□ -0.41
USP28-208ENST00000540438 GATA3P23771 443 aa12.49□□□□□ -0.41
USP28-208ENST00000540438 DSCR9P59020 149 aa12.49□□□□□ -0.41
USP28-208ENST00000540438 TMEM170BQ5T4T1 132 aa12.49□□□□□ -0.41
USP28-208ENST00000540438 PLEKHB2Q96CS7 222 aa12.49□□□□□ -0.41
USP28-208ENST00000540438 K7EMT4 169 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 XCL2Q9UBD3 114 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 IGHV1OR15-1A0A075B7D0 117 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 RBMY1BA6NDE4 496 aaKnown RBP12.48□□□□□ -0.41
USP28-208ENST00000540438 A6NDN8 102 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 RBMY1EA6NEQ0 496 aaKnown RBP12.48□□□□□ -0.41
USP28-208ENST00000540438 F8VRH5 84 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 H7C1H1 209 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 RBMY1DP0C7P1 496 aaKnown RBP12.48□□□□□ -0.41
USP28-208ENST00000540438 ORMDL2Q53FV1 153 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 MORN3Q6PF18 240 aaPredicted RBP12.48□□□□□ -0.41
USP28-208ENST00000540438 ZFP2Q6ZN57 461 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 TOMM6Q96B49 74 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 C11orf86A6NJI1 115 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 OR9G4Q8NGQ1 327 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 PRADC1Q9BSG0 188 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 ZNF580Q9UK33 172 aa12.48□□□□□ -0.41
USP28-208ENST00000540438 NEXN-AS1Q8NBZ9 246 aa12.47□□□□□ -0.41
USP28-208ENST00000540438 OR11H12B2RN74 326 aa12.46□□□□□ -0.41
USP28-208ENST00000540438 CRYGDP07320 174 aa12.46□□□□□ -0.41
USP28-208ENST00000540438 SCGB1D4Q6XE38 83 aa12.46□□□□□ -0.41
USP28-208ENST00000540438 OR11H2Q8NH07 326 aa12.46□□□□□ -0.41
USP28-208ENST00000540438 PHLDA1Q8WV24 401 aaPredicted RBP12.46□□□□□ -0.41
USP28-208ENST00000540438 ATP6V0BQ99437 205 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms