RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 Q6ZS46 218 aa13.27□□□□□ -0.28
RAB40C-205ENST00000539661 ANAPC13Q9BS18 74 aa13.27□□□□□ -0.28
RAB40C-205ENST00000539661 SIRPDQ9H106 197 aa13.27□□□□□ -0.28
RAB40C-205ENST00000539661 KIF25-AS1Q9Y6Z4 181 aa13.27□□□□□ -0.28
RAB40C-205ENST00000539661 ZFYVE26Q68DK2 2539 aa13.27□□□□□ -0.28
RAB40C-205ENST00000539661 G3V318 75 aa13.27□□□□□ -0.29
RAB40C-205ENST00000539661 RNASE3P12724 160 aaKnown RBP13.27□□□□□ -0.29
RAB40C-205ENST00000539661 FBXL19-AS1Q494R0 122 aa13.27□□□□□ -0.29
RAB40C-205ENST00000539661 TEX29Q8N6K0 151 aa13.27□□□□□ -0.29
RAB40C-205ENST00000539661 PKD1L2Q7Z442 2459 aa13.27□□□□□ -0.29
RAB40C-205ENST00000539661 J3KRW8 73 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 VCYO14598 125 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 AMELXQ99217 191 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 CITED1Q99966 193 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 SPRY2O43597 315 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 SLC25A20O43772 301 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 TSPEAR-AS2P59090 65 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 LINC00315P59091 139 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 ZNF876PQ49A33 203 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 KIR2DL4Q99706 377 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 SPG11Q96JI7 2443 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 CENPEQ02224 2701 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 FAM90A27PA6NNH2 459 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 K7ENP7 123 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 SOCS3O14543 225 aa13.26□□□□□ -0.29
RAB40C-205ENST00000539661 J3QQQ9 107 aa13.25□□□□□ -0.29
RAB40C-205ENST00000539661 UBE2E1P51965 193 aa13.25□□□□□ -0.29
RAB40C-205ENST00000539661 TMEM170BQ5T4T1 132 aa13.25□□□□□ -0.29
RAB40C-205ENST00000539661 FAM223BA6NKX1 122 aa13.25□□□□□ -0.29
RAB40C-205ENST00000539661 P0DMU3 169 aa13.25□□□□□ -0.29
RAB40C-205ENST00000539661 FAM231AP0DMU4 169 aa13.25□□□□□ -0.29
RAB40C-205ENST00000539661 FAM231CP0DMU5 169 aa13.25□□□□□ -0.29
RAB40C-205ENST00000539661 LGALS3P17931 250 aaKnown RBP13.25□□□□□ -0.29
RAB40C-205ENST00000539661 SRD5A1P18405 259 aa13.25□□□□□ -0.29
RAB40C-205ENST00000539661 FAM223AQ8IWN6 122 aa13.25□□□□□ -0.29
RAB40C-205ENST00000539661 AJUBAQ96IF1 538 aa13.24□□□□□ -0.29
RAB40C-205ENST00000539661 LINC01600Q96MT4 127 aa13.24□□□□□ -0.29
RAB40C-205ENST00000539661 A0A0B4J2C4 111 aa13.24□□□□□ -0.29
RAB40C-205ENST00000539661 GNRH2O43555 120 aa13.24□□□□□ -0.29
RAB40C-205ENST00000539661 RNASE4P34096 147 aaKnown RBP13.24□□□□□ -0.29
RAB40C-205ENST00000539661 EMP1P54849 157 aa13.24□□□□□ -0.29
RAB40C-205ENST00000539661 GAGE5Q13069 117 aa13.23□□□□□ -0.29
RAB40C-205ENST00000539661 GAGE6Q13070 117 aa13.23□□□□□ -0.29
RAB40C-205ENST00000539661 C11orf71Q6IPW1 123 aa13.23□□□□□ -0.29
RAB40C-205ENST00000539661 ZNRF2Q8NHG8 242 aa13.23□□□□□ -0.29
RAB40C-205ENST00000539661 IGHV3-33P01772 117 aa13.23□□□□□ -0.29
RAB40C-205ENST00000539661 ZFP36P26651 326 aaKnown RBP13.23□□□□□ -0.29
RAB40C-205ENST00000539661 LEPROTO15243 131 aa13.22□□□□□ -0.29
RAB40C-205ENST00000539661 TMEM263Q8WUH6 116 aaKnown RBP13.22□□□□□ -0.29
RAB40C-205ENST00000539661 TRBV6-5A0A0K0K1A5 114 aa13.21□□□□□ -0.29
RAB40C-205ENST00000539661 TRBV27A0A0K0K1C4 114 aa13.21□□□□□ -0.29
RAB40C-205ENST00000539661 A4D1N5 150 aa13.21□□□□□ -0.29
RAB40C-205ENST00000539661 C9JAW5 83 aa13.21□□□□□ -0.29
RAB40C-205ENST00000539661 ARL3P36405 182 aa13.21□□□□□ -0.29
RAB40C-205ENST00000539661 SUMO4Q6EEV6 95 aa13.21□□□□□ -0.29
RAB40C-205ENST00000539661 RHODO00212 210 aa13.21□□□□□ -0.3
RAB40C-205ENST00000539661 NDUFA4O00483 81 aa13.21□□□□□ -0.3
RAB40C-205ENST00000539661 IGHV1-69P01742 117 aa13.21□□□□□ -0.3
RAB40C-205ENST00000539661 RPL39P62891 51 aaKnown RBP13.21□□□□□ -0.3
RAB40C-205ENST00000539661 C5orf56Q8N8D9 126 aa13.2□□□□□ -0.3
RAB40C-205ENST00000539661 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.2□□□□□ -0.3
RAB40C-205ENST00000539661 TGFAP01135 160 aa13.2□□□□□ -0.3
RAB40C-205ENST00000539661 CRIP2P52943 208 aaPredicted RBP13.19□□□□□ -0.3
RAB40C-205ENST00000539661 C19orf54Q5BKX5 351 aa13.19□□□□□ -0.3
RAB40C-205ENST00000539661 TRAV41A0A0B4J266 112 aa13.19□□□□□ -0.3
RAB40C-205ENST00000539661 TMEM223A0PJW6 202 aa13.19□□□□□ -0.3
RAB40C-205ENST00000539661 SDHAF1A6NFY7 115 aa13.19□□□□□ -0.3
RAB40C-205ENST00000539661 GATA3P23771 443 aa13.19□□□□□ -0.3
RAB40C-205ENST00000539661 SAA4P35542 130 aa13.19□□□□□ -0.3
RAB40C-205ENST00000539661 ATXN8Q156A1 80 aa13.19□□□□□ -0.3
RAB40C-205ENST00000539661 Q6Q795 121 aa13.19□□□□□ -0.3
RAB40C-205ENST00000539661 A0A0J9YX75 114 aa13.18□□□□□ -0.3
RAB40C-205ENST00000539661 LGALS9O00182 355 aa13.18□□□□□ -0.3
RAB40C-205ENST00000539661 SNCGO76070 127 aa13.18□□□□□ -0.3
RAB40C-205ENST00000539661 LY6DQ14210 128 aa13.18□□□□□ -0.3
RAB40C-205ENST00000539661 RAX2Q96IS3 184 aa13.18□□□□□ -0.3
RAB40C-205ENST00000539661 GAGE2BQ13066 116 aa13.18□□□□□ -0.3
RAB40C-205ENST00000539661 GAGE2EQ4V326 116 aa13.18□□□□□ -0.3
RAB40C-205ENST00000539661 GAGE2DQ9UEU5 116 aa13.18□□□□□ -0.3
RAB40C-205ENST00000539661 RHOHQ15669 191 aa13.17□□□□□ -0.3
RAB40C-205ENST00000539661 ACACBO00763 2458 aa13.17□□□□□ -0.3
RAB40C-205ENST00000539661 KLLNB2CW77 178 aa13.17□□□□□ -0.3
RAB40C-205ENST00000539661 EIF4EBP3O60516 100 aaPredicted RBP13.17□□□□□ -0.3
RAB40C-205ENST00000539661 RPL13AP40429 203 aaKnown RBP13.17□□□□□ -0.3
RAB40C-205ENST00000539661 NSUN5P1Q3KNT7 163 aa13.17□□□□□ -0.3
RAB40C-205ENST00000539661 UNQ9165/PRO28630Q6UXU0 137 aa13.17□□□□□ -0.3
RAB40C-205ENST00000539661 TRPT1Q86TN4 253 aaKnown RBP13.17□□□□□ -0.3
RAB40C-205ENST00000539661 CUBNO60494 3623 aa13.17□□□□□ -0.3
RAB40C-205ENST00000539661 FAM159AQ6UWV7 190 aa13.16□□□□□ -0.3
RAB40C-205ENST00000539661 NHLRC4P0CG21 123 aaPredicted RBP13.16□□□□□ -0.3
RAB40C-205ENST00000539661 MUC4Q99102 2169 aa13.16□□□□□ -0.3
RAB40C-205ENST00000539661 LINC01620Q4KN68 170 aa13.15□□□□□ -0.3
RAB40C-205ENST00000539661 Q8N1Y9 231 aa13.15□□□□□ -0.3
RAB40C-205ENST00000539661 F5H697 171 aa13.15□□□□□ -0.3
RAB40C-205ENST00000539661 DEFB1P60022 68 aa13.15□□□□□ -0.3
RAB40C-205ENST00000539661 MUSTN1Q8IVN3 82 aa13.15□□□□□ -0.3
RAB40C-205ENST00000539661 CACNA1AO00555 2505 aa13.14□□□□□ -0.31
RAB40C-205ENST00000539661 F6UB75 175 aa13.14□□□□□ -0.31
RAB40C-205ENST00000539661 CCL21O00585 134 aa13.14□□□□□ -0.31
RAB40C-205ENST00000539661 NDUFV3P56181 108 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms