RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 MRPL16Q9NX20 251 aaKnown RBP15.15■□□□□ 0.02
VPS28-208ENST00000527797 A8MWV9 139 aa15.14■□□□□ 0.01
VPS28-208ENST00000527797 POM121L12Q8N7R1 296 aa15.14■□□□□ 0.01
VPS28-208ENST00000527797 RASL10AQ92737 203 aa15.14■□□□□ 0.01
VPS28-208ENST00000527797 LOC105371267A0A1B0GV96 52 aa15.14■□□□□ 0.01
VPS28-208ENST00000527797 CRYGDP07320 174 aa15.14■□□□□ 0.01
VPS28-208ENST00000527797 LINC00315P59091 139 aa15.14■□□□□ 0.01
VPS28-208ENST00000527797 DAZ2Q13117 558 aaKnown RBP15.14■□□□□ 0.01
VPS28-208ENST00000527797 FAM74A4Q5TZK3 123 aa15.14■□□□□ 0.01
VPS28-208ENST00000527797 SAMD10Q9BYL1 202 aa15.14■□□□□ 0.01
VPS28-208ENST00000527797 LAMTOR2Q9Y2Q5 125 aa15.14■□□□□ 0.01
VPS28-208ENST00000527797 X6R8D5 127 aa15.14■□□□□ 0.01
VPS28-208ENST00000527797 TRAV26-2A0A0B4J265 109 aa15.13■□□□□ 0.01
VPS28-208ENST00000527797 PLAC8L1A1L4L8 177 aa15.13■□□□□ 0.01
VPS28-208ENST00000527797 Q6ZWC4 215 aa15.13■□□□□ 0.01
VPS28-208ENST00000527797 NOP10Q9NPE3 64 aaKnown RBP15.13■□□□□ 0.01
VPS28-208ENST00000527797 TRGV1A0A0A0MS02 117 aa15.12■□□□□ 0.01
VPS28-208ENST00000527797 F5H697 171 aa15.12■□□□□ 0.01
VPS28-208ENST00000527797 SERF1AO75920 110 aa15.12■□□□□ 0.01
VPS28-208ENST00000527797 NPYP01303 97 aa15.12■□□□□ 0.01
VPS28-208ENST00000527797 LGALS9BQ3B8N2 356 aa15.12■□□□□ 0.01
VPS28-208ENST00000527797 GAS8-AS1O95177 125 aa15.11■□□□□ 0.01
VPS28-208ENST00000527797 OVOL2Q9BRP0 275 aa15.11■□□□□ 0.01
VPS28-208ENST00000527797 TNFRSF6BO95407 300 aa15.1■□□□□ 0.01
VPS28-208ENST00000527797 GATA1P15976 413 aaPredicted RBP15.1■□□□□ 0.01
VPS28-208ENST00000527797 HIST3H2BBQ8N257 126 aa15.1■□□□□ 0.01
VPS28-208ENST00000527797 OR11H2Q8NH07 326 aa15.1■□□□□ 0.01
VPS28-208ENST00000527797 RNF183Q96D59 192 aa15.1■□□□□ 0.01
VPS28-208ENST00000527797 LINC00310P59036 64 aa15.1■□□□□ 0.01
VPS28-208ENST00000527797 ZNF56Q15929 161 aa15.1■□□□□ 0.01
VPS28-208ENST00000527797 PDZD11Q5EBL8 140 aa15.1■□□□□ 0.01
VPS28-208ENST00000527797 RS1O15537 224 aa15.09■□□□□ 0.01
VPS28-208ENST00000527797 NUPR1O60356 82 aa15.09■□□□□ 0.01
VPS28-208ENST00000527797 ESDP10768 282 aa15.09■□□□□ 0.01
VPS28-208ENST00000527797 S100A2P29034 98 aa15.09■□□□□ 0.01
VPS28-208ENST00000527797 KPRPQ5T749 579 aaPredicted RBP15.09■□□□□ 0.01
VPS28-208ENST00000527797 CFAP126Q5VTH2 177 aa15.09■□□□□ 0.01
VPS28-208ENST00000527797 Q6ZTI0 123 aa15.09■□□□□ 0.01
VPS28-208ENST00000527797 NIT1Q86X76 327 aa15.09■□□□□ 0.01
VPS28-208ENST00000527797 EMP1P54849 157 aa15.08■□□□□ 0
VPS28-208ENST00000527797 SUMO4Q6EEV6 95 aa15.08■□□□□ 0
VPS28-208ENST00000527797 NRACQ8N912 160 aa15.08■□□□□ 0
VPS28-208ENST00000527797 PRSS3P2Q8NHM4 247 aa15.08■□□□□ 0
VPS28-208ENST00000527797 MAP1LC3AQ9H492 121 aa15.08■□□□□ 0
VPS28-208ENST00000527797 LOC389332A0A1B0GUA5 103 aa15.07■□□□□ 0
VPS28-208ENST00000527797 RHODO00212 210 aa15.07■□□□□ 0
VPS28-208ENST00000527797 PPP1R17O96001 155 aa15.07■□□□□ 0
VPS28-208ENST00000527797 RNASEKQ6P5S7 137 aaKnown RBP15.07■□□□□ 0
VPS28-208ENST00000527797 LINC00614P0C842 121 aa15.06■□□□□ 0
VPS28-208ENST00000527797 UFSP1Q6NVU6 142 aa15.06■□□□□ 0
VPS28-208ENST00000527797 IGHV3-73A0A0B4J1V6 119 aa15.06■□□□□ 0
VPS28-208ENST00000527797 MIFP14174 115 aa15.06■□□□□ 0
VPS28-208ENST00000527797 OR4C5Q8NGB2 326 aa15.06■□□□□ 0
VPS28-208ENST00000527797 CHCHD1Q96BP2 118 aaKnown RBP15.06■□□□□ 0
VPS28-208ENST00000527797 IFI27P40305 119 aaPredicted RBP15.05■□□□□ -0
VPS28-208ENST00000527797 ZFP2Q6ZN57 461 aa15.05■□□□□ -0
VPS28-208ENST00000527797 FA2HQ7L5A8 372 aa15.05■□□□□ -0
VPS28-208ENST00000527797 URB1-AS1Q96HZ7 61 aa15.05■□□□□ -0
VPS28-208ENST00000527797 GAGE12BA1L429 117 aa15.04■□□□□ -0
VPS28-208ENST00000527797 IFITM10A6NMD0 228 aa15.04■□□□□ -0
VPS28-208ENST00000527797 PRSS47A8MTI9 375 aa15.04■□□□□ -0
VPS28-208ENST00000527797 GAGE7O76087 117 aa15.04■□□□□ -0
VPS28-208ENST00000527797 PRB2P02812 416 aaPredicted RBP15.04■□□□□ -0
VPS28-208ENST00000527797 GAGE12FP0CL80 117 aa15.04■□□□□ -0
VPS28-208ENST00000527797 GAGE12GP0CL81 117 aa15.04■□□□□ -0
VPS28-208ENST00000527797 GAGE12IP0CL82 117 aa15.04■□□□□ -0
VPS28-208ENST00000527797 RPL39LQ96EH5 51 aaKnown RBP15.04■□□□□ -0
VPS28-208ENST00000527797 TP53TG1Q9Y2A0 90 aa15.04■□□□□ -0
VPS28-208ENST00000527797 TRGV2A0A075B6R0 118 aa15.03■□□□□ -0
VPS28-208ENST00000527797 TRAV4A0A0B4J268 109 aa15.03■□□□□ -0
VPS28-208ENST00000527797 HSBP1O75506 76 aa15.03■□□□□ -0
VPS28-208ENST00000527797 C20orf78Q9BR46 151 aa15.03■□□□□ -0
VPS28-208ENST00000527797 IGHV4-28A0A0C4DH34 117 aa15.03■□□□□ -0
VPS28-208ENST00000527797 H7C1H1 209 aa15.03■□□□□ -0
VPS28-208ENST00000527797 M0QY20 66 aa15.03■□□□□ -0
VPS28-208ENST00000527797 FABP4P15090 132 aa15.03■□□□□ -0
VPS28-208ENST00000527797 KRTAP21-3Q3LHN1 58 aa15.03■□□□□ -0
VPS28-208ENST00000527797 TMEM18Q96B42 140 aa15.03■□□□□ -0
VPS28-208ENST00000527797 NXT2Q9NPJ8 142 aaKnown RBP15.03■□□□□ -0
VPS28-208ENST00000527797 PKD1L1Q8TDX9 2849 aa15.02■□□□□ -0
VPS28-208ENST00000527797 HIST1H2BLQ99880 126 aa15.02□□□□□ -0.01
VPS28-208ENST00000527797 EDA2RQ9HAV5 297 aa15.02□□□□□ -0.01
VPS28-208ENST00000527797 ANK2Q01484 3957 aa15.01□□□□□ -0.01
VPS28-208ENST00000527797 K7EIL1 84 aa15.01□□□□□ -0.01
VPS28-208ENST00000527797 PMCHP20382 165 aa15.01□□□□□ -0.01
VPS28-208ENST00000527797 SUMO2P61956 95 aaKnown RBP15.01□□□□□ -0.01
VPS28-208ENST00000527797 Q8NAQ8 132 aa15.01□□□□□ -0.01
VPS28-208ENST00000527797 AP5S1Q9NUS5 200 aa15.01□□□□□ -0.01
VPS28-208ENST00000527797 CIDEAO60543 219 aa15□□□□□ -0.01
VPS28-208ENST00000527797 AMTP48728 403 aa15□□□□□ -0.01
VPS28-208ENST00000527797 Q8N8P6 123 aa15□□□□□ -0.01
VPS28-208ENST00000527797 ZNF479Q96JC4 524 aa15□□□□□ -0.01
VPS28-208ENST00000527797 ST20Q9HBF5 79 aa15□□□□□ -0.01
VPS28-208ENST00000527797 LYRM9A8MSI8 78 aa14.99□□□□□ -0.01
VPS28-208ENST00000527797 IGHV3-53P01767 116 aa14.99□□□□□ -0.01
VPS28-208ENST00000527797 AKR1D1P51857 326 aa14.99□□□□□ -0.01
VPS28-208ENST00000527797 LINC00612Q8N6U2 182 aa14.99□□□□□ -0.01
VPS28-208ENST00000527797 NIT2Q9NQR4 276 aa14.99□□□□□ -0.01
VPS28-208ENST00000527797 DEFB4AO15263 64 aa14.99□□□□□ -0.01
VPS28-208ENST00000527797 DEFB121Q5J5C9 76 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms