RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 RXFP4Q8TDU9 374 aa2.28□□□□□ -2.04
CD44-219ENST00000525685 ZNF431Q8TF32 576 aaPredicted RBP2.28□□□□□ -2.04
CD44-219ENST00000525685 OR4C12Q96R67 309 aa2.28□□□□□ -2.04
CD44-219ENST00000525685 PSMG3Q9BT73 122 aaPredicted RBP2.28□□□□□ -2.04
CD44-219ENST00000525685 MAP1LC3BQ9GZQ8 125 aa2.28□□□□□ -2.04
CD44-219ENST00000525685 TMEM126AQ9H061 195 aa2.28□□□□□ -2.04
CD44-219ENST00000525685 PRO1933Q9H354 126 aa2.28□□□□□ -2.04
CD44-219ENST00000525685 MAP1LC3AQ9H492 121 aa2.28□□□□□ -2.04
CD44-219ENST00000525685 PRO0628Q9UI54 55 aa2.28□□□□□ -2.04
CD44-219ENST00000525685 ERG28Q9UKR5 140 aa2.28□□□□□ -2.04
CD44-219ENST00000525685 RCL1Q9Y2P8 373 aaKnown RBP2.28□□□□□ -2.04
CD44-219ENST00000525685 NBEAL1Q6ZS30 2694 aa2.28□□□□□ -2.04
CD44-219ENST00000525685 TRRAPQ9Y4A5 3859 aa2.28□□□□□ -2.04
CD44-219ENST00000525685 IGHV3OR16-8A0A075B7F1 116 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 TMEM189A5PLL7 270 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 LRCOL1A6NCL2 159 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 IZUMO1RA6ND01 250 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 C2orf70A6NJV1 201 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 COLCA2A8K830 154 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 INMT-MINDY4F8WBC2 141 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 H3BP45 60 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 NDUFA4O00483 81 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 HMGB3O15347 200 aaKnown RBP2.27□□□□□ -2.05
CD44-219ENST00000525685 SYNGR2O43760 224 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 GCGP01275 180 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 MT-ND4LP03901 98 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 CTSGP08311 255 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 IGLC1P0CG04 106 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 ESDP10768 282 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 SLC25A4P12235 298 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 RPL12P30050 165 aaKnown RBP2.27□□□□□ -2.05
CD44-219ENST00000525685 INSL3P51460 131 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 RND2P52198 227 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 PAFAH1B2P68402 229 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 PEA15Q15121 130 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 PMVKQ15126 192 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 IAH1Q2TAA2 248 aaPredicted RBP2.27□□□□□ -2.05
CD44-219ENST00000525685 OR10J3Q5JRS4 329 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 SOHLH1Q5JUK2 328 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 C10orf91Q5T1B1 145 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 C1orf194Q5T5A4 169 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 ZFAND6Q6FIF0 208 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 PRSS54Q6PEW0 395 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 FAM19A5Q7Z5A7 132 aaPredicted RBP2.27□□□□□ -2.05
CD44-219ENST00000525685 ZNF664Q8N3J9 261 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 RNF182Q8N6D2 247 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 DYNLRB2Q8TF09 96 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 C11orf1Q9H5F2 150 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 RPP21Q9H633 154 aaKnown RBP2.27□□□□□ -2.05
CD44-219ENST00000525685 TUBA4BQ9H853 241 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 MRPL16Q9NX20 251 aaKnown RBP2.27□□□□□ -2.05
CD44-219ENST00000525685 MRPL27Q9P0M9 148 aaKnown RBP2.27□□□□□ -2.05
CD44-219ENST00000525685 CACFD1Q9UGQ2 172 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 NAT8Q9UHE5 227 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 RFNGQ9Y644 331 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 TNCP24821 2201 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 COL6A5A8TX70 2615 aa2.27□□□□□ -2.05
CD44-219ENST00000525685 TENM1Q9UKZ4 2725 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 IGKV1D-37A0A075B6S9 117 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 IGHV3-49A0A0A0MS15 119 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 IGHV7-4-1A0A0J9YVY3 117 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 A0A1B0GVX0 72 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 A0A1B0GX51 115 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 SNRPGP15A8MWD9 76 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 K7EPK0 472 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 ZNF207O43670 478 aaKnown RBP2.26□□□□□ -2.05
CD44-219ENST00000525685 SIX6O95475 246 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 MPC2O95563 127 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 IGKV1-17P01599 117 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 CBLN1P23435 193 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 S100A10P60903 97 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 RPS28P62857 69 aaKnown RBP2.26□□□□□ -2.05
CD44-219ENST00000525685 IL15RAQ13261 267 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 DEFB114Q30KQ6 69 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 SPANXN5Q5MJ07 72 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 EIF5AL1Q6IS14 154 aaKnown RBP2.26□□□□□ -2.05
CD44-219ENST00000525685 TMEM14EPQ6UXP3 125 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 PP632Q6XCG6 107 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 FAM19A1Q7Z5A9 133 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 OR8I2Q8N0Y5 310 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 OR2K2Q8NGT1 345 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 ACY3Q96HD9 319 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 C2orf50Q96LR7 162 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 CIB3Q96Q77 187 aaPredicted RBP2.26□□□□□ -2.05
CD44-219ENST00000525685 CHAC1Q9BUX1 264 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 RETNQ9HD89 108 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 DAZ1Q9NQZ3 744 aaKnown RBP2.26□□□□□ -2.05
CD44-219ENST00000525685 SMCO4Q9NRQ5 59 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 LYRM2Q9NU23 88 aaPredicted RBP2.26□□□□□ -2.05
CD44-219ENST00000525685 PSENENQ9NZ42 101 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 NAT8BQ9UHF3 227 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 TNFSF18Q9UNG2 199 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 TP53TG1Q9Y2A0 90 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 CARHSP1Q9Y2V2 147 aaKnown RBP2.26□□□□□ -2.05
CD44-219ENST00000525685 LSM5Q9Y4Y9 91 aaKnown RBP2.26□□□□□ -2.05
CD44-219ENST00000525685 STAB1Q9NY15 2570 aa2.26□□□□□ -2.05
CD44-219ENST00000525685 IGLV1-50A0A075B6I6 118 aa2.25□□□□□ -2.05
CD44-219ENST00000525685 IGLV2-18A0A075B6J9 118 aa2.25□□□□□ -2.05
CD44-219ENST00000525685 IGKV1OR2-108A0A075B7D4 117 aa2.25□□□□□ -2.05
CD44-219ENST00000525685 FAM24AA6NFZ4 105 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms