RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 IGLL5B9A064 214 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 EGR2P11161 476 aaPredicted RBP6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 PFN2P35080 140 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 LIAT1Q6ZQX7 453 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 Q8N6K4 173 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 SPANXA1Q9NS26 97 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 TRBV6-6A0A0A6YYG2 114 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 SCO2A0A1W2PP80 73 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 LINC01619G3V211 115 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 PRSS1P07477 247 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 CACNG7P62955 275 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 ZNF502Q8TBZ5 544 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 SIGLEC8Q9NYZ4 499 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 PSENENQ9NZ42 101 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 WT1-ASQ06250 92 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 Q6ZRM9 215 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 NFE4Q86UQ8 179 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 ZNF491Q8N8L2 437 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 PEMTQ9UBM1 199 aa6.02□□□□□ -1.45
LIMCH1-219ENST00000514096 TRGV11A0A075B6L2 103 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 TRAV13-1A0A0B4J241 112 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 MALP21145 153 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 PQLC2Q6ZP29 291 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 FAM231DQ6ZW35 169 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 IGHG4P01861 327 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 ELANEP08246 267 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 PSMB8P28062 276 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 RPL13AP40429 203 aaKnown RBP6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 ASIPP42127 132 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 KRTAP10-11P60412 298 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 STHQ8IWL8 128 aa6.01□□□□□ -1.45
LIMCH1-219ENST00000514096 GGTLC3B5MD39 225 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 IGKV1-39P01597 117 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 IGKV1D-39P04432 117 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 ERHP84090 104 aaKnown RBP6□□□□□ -1.45
LIMCH1-219ENST00000514096 UNQ9165/PRO28630Q6UXU0 137 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 CEND1Q8N111 149 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 UPK2O00526 184 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 ZNF726P1Q15940 193 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 C2orf91Q6ZV80 131 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 GTSF1Q8WW33 167 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 GNB1LQ9BYB4 327 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 AAMDCQ9H7C9 122 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 IGKV1-5P01602 117 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 FHL3Q13643 280 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 EBI3Q14213 229 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 TMEM187Q14656 261 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 TMEM30BQ3MIR4 351 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 NTN5Q8WTR8 489 aaPredicted RBP6□□□□□ -1.45
LIMCH1-219ENST00000514096 AP5S1Q9NUS5 200 aa6□□□□□ -1.45
LIMCH1-219ENST00000514096 IGHV3OR16-12A0A075B7B8 117 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 ZNF561-AS1K7EIQ3 104 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 NDUFA3O95167 84 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 RPP25LQ8N5L8 163 aaKnown RBP5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 NPBQ8NG41 125 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 CHAC1Q9BUX1 264 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 CTXND1A0A1B0GTU2 59 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 SCGB1D4Q6XE38 83 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 ANKRD29Q8N6D5 301 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 C2orf70A6NJV1 201 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 GP9P14770 177 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 GOLT1AQ6ZVE7 132 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 MRPL55Q7Z7F7 128 aaKnown RBP5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 UBE2E2Q96LR5 201 aa5.99□□□□□ -1.45
LIMCH1-219ENST00000514096 LGALS1P09382 135 aaKnown RBP5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 HTN1P15515 57 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 DEFB1P60022 68 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 DEFB4AO15263 64 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 ZNF493Q6ZR52 646 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 TEN1Q86WV5 123 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 APRG1Q8IVJ8 170 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 TMEM213A2RRL7 107 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 LINC01549A6NIU2 74 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 IGF1P05019 195 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 C12orf74Q32Q52 190 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 C8orf31Q8N9H6 132 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 TMEM167AQ8TBQ9 72 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 NPIPB3Q92617 1050 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 EEF1AKMT3Q96AZ1 226 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 LINC00479Q96M42 142 aa5.98□□□□□ -1.45
LIMCH1-219ENST00000514096 TRBV9A0A0B4J1U6 114 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 TEX22C9J3V5 150 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 FGF6P10767 208 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 C4orf3Q8WVX3 66 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 K7EIL1 84 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 NPPCP23582 126 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 MYCNOSP40205 109 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 LYZP61626 148 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 RBM3P98179 157 aaKnown RBP5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 Q8N2B8 174 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 C3orf22Q8N5N4 141 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 RASL10AQ92737 203 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 LINC01587Q99440 93 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 TMEM222Q9H0R3 208 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 HIGD1BQ9P298 99 aa5.97□□□□□ -1.45
LIMCH1-219ENST00000514096 IGFL4Q6B9Z1 124 aa5.96□□□□□ -1.45
LIMCH1-219ENST00000514096 ZFP2Q6ZN57 461 aa5.96□□□□□ -1.45
LIMCH1-219ENST00000514096 ZNF414Q96IQ9 312 aa5.96□□□□□ -1.45
LIMCH1-219ENST00000514096 FANCD2OSQ96PS1 177 aa5.96□□□□□ -1.45
LIMCH1-219ENST00000514096 MRPL36Q9P0J6 103 aaKnown RBP5.96□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms