RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 LINC01559Q495D7 138 aa8.55□□□□□ -1.04
PTPRF-214ENST00000496043 SFRP2Q96HF1 295 aa8.55□□□□□ -1.04
PTPRF-214ENST00000496043 ZNF471Q9BX82 626 aaPredicted RBP8.55□□□□□ -1.04
PTPRF-214ENST00000496043 Q9HAA7 133 aa8.55□□□□□ -1.04
PTPRF-214ENST00000496043 APOBP04114 4563 aaKnown RBP8.54□□□□□ -1.04
PTPRF-214ENST00000496043 H2AFB1P0C5Y9 115 aa8.54□□□□□ -1.04
PTPRF-214ENST00000496043 GCSHP23434 173 aa8.54□□□□□ -1.04
PTPRF-214ENST00000496043 KRTAP10-1P60331 282 aa8.54□□□□□ -1.04
PTPRF-214ENST00000496043 C14orf178Q8N769 122 aaPredicted RBP8.54□□□□□ -1.04
PTPRF-214ENST00000496043 TM2D2Q9BX73 214 aa8.54□□□□□ -1.04
PTPRF-214ENST00000496043 A0A1B0GV50 99 aa8.53□□□□□ -1.04
PTPRF-214ENST00000496043 LRCOL1A6NCL2 159 aa8.53□□□□□ -1.04
PTPRF-214ENST00000496043 M0R381 172 aa8.53□□□□□ -1.04
PTPRF-214ENST00000496043 BCL2L11O43521 198 aa8.53□□□□□ -1.04
PTPRF-214ENST00000496043 PFDN1O60925 122 aa8.53□□□□□ -1.04
PTPRF-214ENST00000496043 XGP55808 180 aa8.53□□□□□ -1.04
PTPRF-214ENST00000496043 FAM74A4Q5TZK3 123 aa8.53□□□□□ -1.04
PTPRF-214ENST00000496043 ZFP82Q8N141 532 aa8.53□□□□□ -1.04
PTPRF-214ENST00000496043 Q9UF83 564 aa8.53□□□□□ -1.04
PTPRF-214ENST00000496043 A0A087WWL8 130 aa8.52□□□□□ -1.05
PTPRF-214ENST00000496043 TRAV8-3A0A0A6YYJ7 113 aa8.52□□□□□ -1.05
PTPRF-214ENST00000496043 LINC00694P0DN24 101 aa8.52□□□□□ -1.05
PTPRF-214ENST00000496043 LAGE3Q14657 143 aa8.52□□□□□ -1.05
PTPRF-214ENST00000496043 TOR2AQ5JU69 321 aa8.52□□□□□ -1.05
PTPRF-214ENST00000496043 TMUB2Q71RG4 321 aa8.52□□□□□ -1.05
PTPRF-214ENST00000496043 BAGE2Q86Y30 109 aa8.52□□□□□ -1.05
PTPRF-214ENST00000496043 NTN5Q8WTR8 489 aaPredicted RBP8.52□□□□□ -1.05
PTPRF-214ENST00000496043 IGLV5-52A0A0A0MRZ9 124 aa8.51□□□□□ -1.05
PTPRF-214ENST00000496043 EPM2AB3EWF7 344 aa8.51□□□□□ -1.05
PTPRF-214ENST00000496043 TRBV10-1A0A0K0K1A3 114 aa8.5□□□□□ -1.05
PTPRF-214ENST00000496043 SCO2A0A1W2PP80 73 aa8.5□□□□□ -1.05
PTPRF-214ENST00000496043 RPL36AP83881 106 aaKnown RBP8.5□□□□□ -1.05
PTPRF-214ENST00000496043 DAZ4Q86SG3 579 aaKnown RBP8.5□□□□□ -1.05
PTPRF-214ENST00000496043 Q8N814 137 aa8.5□□□□□ -1.05
PTPRF-214ENST00000496043 RPL36ALQ969Q0 106 aaKnown RBP8.5□□□□□ -1.05
PTPRF-214ENST00000496043 MLST8Q9BVC4 326 aa8.5□□□□□ -1.05
PTPRF-214ENST00000496043 DAZ3Q9NR90 486 aaKnown RBP8.5□□□□□ -1.05
PTPRF-214ENST00000496043 URGCP-MRPS24S4R325 110 aa8.5□□□□□ -1.05
PTPRF-214ENST00000496043 CXCL1P09341 107 aa8.49□□□□□ -1.05
PTPRF-214ENST00000496043 COX11Q9Y6N1 276 aa8.49□□□□□ -1.05
PTPRF-214ENST00000496043 RAB5CP51148 216 aa8.48□□□□□ -1.05
PTPRF-214ENST00000496043 RAB4BP61018 213 aa8.48□□□□□ -1.05
PTPRF-214ENST00000496043 RPL19P84098 196 aaKnown RBP8.48□□□□□ -1.05
PTPRF-214ENST00000496043 EIF5AL1Q6IS14 154 aaKnown RBP8.48□□□□□ -1.05
PTPRF-214ENST00000496043 AKAP14Q86UN6 197 aa8.48□□□□□ -1.05
PTPRF-214ENST00000496043 NIT1Q86X76 327 aa8.48□□□□□ -1.05
PTPRF-214ENST00000496043 Q8N3U1 123 aa8.48□□□□□ -1.05
PTPRF-214ENST00000496043 TRBV7-3A0A075B6L6 115 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 TRAV1-1A0A0B4J248 108 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 TEX46H3BTG2 121 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 CCL20P78556 96 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 ELOBQ15370 118 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 SPANXN1Q5VSR9 72 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 PRR27Q6MZM9 219 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 KCNIP4Q6PIL6 250 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 TCTE3Q8IZS6 198 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 FRZBQ92765 325 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 RMI2Q96E14 147 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 SSBP4Q9BWG4 385 aaPredicted RBP8.47□□□□□ -1.05
PTPRF-214ENST00000496043 MANBALQ9NQG1 85 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 GNG13Q9P2W3 67 aa8.47□□□□□ -1.05
PTPRF-214ENST00000496043 A0A087WX48 190 aa8.46□□□□□ -1.06
PTPRF-214ENST00000496043 SNAI2O43623 268 aa8.46□□□□□ -1.06
PTPRF-214ENST00000496043 OR5AL1P0C617 328 aa8.46□□□□□ -1.06
PTPRF-214ENST00000496043 RPL35P42766 123 aaKnown RBP8.46□□□□□ -1.06
PTPRF-214ENST00000496043 UBE2D3P61077 147 aa8.46□□□□□ -1.06
PTPRF-214ENST00000496043 UBE2D2P62837 147 aa8.46□□□□□ -1.06
PTPRF-214ENST00000496043 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.46□□□□□ -1.06
PTPRF-214ENST00000496043 OR10G8Q8NGN5 311 aa8.46□□□□□ -1.06
PTPRF-214ENST00000496043 OR10AG1Q8NH19 301 aa8.46□□□□□ -1.06
PTPRF-214ENST00000496043 TMEM70Q9BUB7 260 aa8.46□□□□□ -1.06
PTPRF-214ENST00000496043 CHCHD7Q9BUK0 85 aa8.46□□□□□ -1.06
PTPRF-214ENST00000496043 TMEM262E9PQX1 116 aa8.45□□□□□ -1.06
PTPRF-214ENST00000496043 F5H697 171 aa8.45□□□□□ -1.06
PTPRF-214ENST00000496043 INAFM2P0DMQ5 153 aa8.45□□□□□ -1.06
PTPRF-214ENST00000496043 SSTP61278 116 aa8.45□□□□□ -1.06
PTPRF-214ENST00000496043 ZNF56Q15929 161 aa8.45□□□□□ -1.06
PTPRF-214ENST00000496043 DAZAP1Q96EP5 407 aaKnown RBP8.45□□□□□ -1.06
PTPRF-214ENST00000496043 KLK12Q9UKR0 248 aa8.45□□□□□ -1.06
PTPRF-214ENST00000496043 MUC21A0A0G2JKD1 596 aa8.44□□□□□ -1.06
PTPRF-214ENST00000496043 MUC21A0A140T8X8 626 aa8.44□□□□□ -1.06
PTPRF-214ENST00000496043 FAM229AH3BQW9 127 aa8.44□□□□□ -1.06
PTPRF-214ENST00000496043 SMR3BP02814 79 aaPredicted RBP8.44□□□□□ -1.06
PTPRF-214ENST00000496043 SMIM17P0DL12 118 aa8.44□□□□□ -1.06
PTPRF-214ENST00000496043 SULT1A2P50226 295 aa8.44□□□□□ -1.06
PTPRF-214ENST00000496043 NEXN-AS1Q8NBZ9 246 aa8.44□□□□□ -1.06
PTPRF-214ENST00000496043 BAALCQ8WXS3 180 aa8.44□□□□□ -1.06
PTPRF-214ENST00000496043 C11orf52Q96A22 123 aa8.44□□□□□ -1.06
PTPRF-214ENST00000496043 IGKV2D-24A0A075B6R9 120 aa8.43□□□□□ -1.06
PTPRF-214ENST00000496043 TRBV6-8A0A0A6YYG3 113 aa8.43□□□□□ -1.06
PTPRF-214ENST00000496043 LECT2O14960 151 aa8.43□□□□□ -1.06
PTPRF-214ENST00000496043 C1QBP02746 253 aa8.43□□□□□ -1.06
PTPRF-214ENST00000496043 RPS20P60866 119 aaKnown RBP8.43□□□□□ -1.06
PTPRF-214ENST00000496043 Q0VG73 95 aa8.43□□□□□ -1.06
PTPRF-214ENST00000496043 WFDC2Q14508 124 aa8.43□□□□□ -1.06
PTPRF-214ENST00000496043 Q5VSD8 79 aa8.43□□□□□ -1.06
PTPRF-214ENST00000496043 Q8N976 141 aa8.43□□□□□ -1.06
PTPRF-214ENST00000496043 UBE2WQ96B02 151 aa8.43□□□□□ -1.06
PTPRF-214ENST00000496043 DERL1Q9BUN8 251 aa8.43□□□□□ -1.06
PTPRF-214ENST00000496043 IFNA1P01562 189 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms