RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 SNAI2O43623 268 aa10.94□□□□□ -0.66
LIME1-209ENST00000494776 FER1L6-AS1Q8NA97 138 aa10.94□□□□□ -0.66
LIME1-209ENST00000494776 OCC1Q8TAD7 63 aa10.94□□□□□ -0.66
LIME1-209ENST00000494776 SSBP4Q9BWG4 385 aaPredicted RBP10.94□□□□□ -0.66
LIME1-209ENST00000494776 GAGE12JA6NER3 117 aa10.93□□□□□ -0.66
LIME1-209ENST00000494776 GZMBP10144 247 aa10.93□□□□□ -0.66
LIME1-209ENST00000494776 GAGE1Q13065 139 aa10.93□□□□□ -0.66
LIME1-209ENST00000494776 GAGE4Q13068 117 aa10.93□□□□□ -0.66
LIME1-209ENST00000494776 GAGE5Q13069 117 aa10.93□□□□□ -0.66
LIME1-209ENST00000494776 GAGE13Q4V321 117 aa10.93□□□□□ -0.66
LIME1-209ENST00000494776 UFSP1Q6NVU6 142 aa10.93□□□□□ -0.66
LIME1-209ENST00000494776 C6orf223Q8N319 242 aa10.93□□□□□ -0.66
LIME1-209ENST00000494776 DNAH10Q8IVF4 4471 aa10.92□□□□□ -0.66
LIME1-209ENST00000494776 FRAS1Q86XX4 4008 aa10.92□□□□□ -0.66
LIME1-209ENST00000494776 A0A1W2PPQ1 181 aa10.92□□□□□ -0.66
LIME1-209ENST00000494776 CRYGDP07320 174 aa10.92□□□□□ -0.66
LIME1-209ENST00000494776 C14orf178Q8N769 122 aaPredicted RBP10.92□□□□□ -0.66
LIME1-209ENST00000494776 NUDT10Q8NFP7 164 aa10.92□□□□□ -0.66
LIME1-209ENST00000494776 ATP6V0E2Q8NHE4 81 aa10.92□□□□□ -0.66
LIME1-209ENST00000494776 NUDT11Q96G61 164 aa10.92□□□□□ -0.66
LIME1-209ENST00000494776 TRAV9-2A0A087WT02 112 aa10.91□□□□□ -0.66
LIME1-209ENST00000494776 SMIM17P0DL12 118 aa10.91□□□□□ -0.66
LIME1-209ENST00000494776 ZNF56Q15929 161 aa10.91□□□□□ -0.66
LIME1-209ENST00000494776 SMIM7Q9BQ49 75 aa10.91□□□□□ -0.66
LIME1-209ENST00000494776 RNASE7Q9H1E1 156 aaKnown RBP10.91□□□□□ -0.66
LIME1-209ENST00000494776 LY96Q9Y6Y9 160 aa10.91□□□□□ -0.66
LIME1-209ENST00000494776 TRAV8-6A0A0B4J262 113 aa10.9□□□□□ -0.66
LIME1-209ENST00000494776 F2Z2F3 143 aa10.9□□□□□ -0.66
LIME1-209ENST00000494776 K7EN84 100 aa10.9□□□□□ -0.66
LIME1-209ENST00000494776 NDUFS6O75380 124 aaKnown RBP10.9□□□□□ -0.66
LIME1-209ENST00000494776 TIRAPP58753 221 aa10.9□□□□□ -0.66
LIME1-209ENST00000494776 OR10J3Q5JRS4 329 aa10.9□□□□□ -0.66
LIME1-209ENST00000494776 WFDC10BQ8IUB3 73 aa10.9□□□□□ -0.66
LIME1-209ENST00000494776 GTSF1LQ9H1H1 148 aa10.9□□□□□ -0.66
LIME1-209ENST00000494776 RPP21Q9H633 154 aaKnown RBP10.9□□□□□ -0.66
LIME1-209ENST00000494776 ZNF727A8MUV8 499 aa10.89□□□□□ -0.67
LIME1-209ENST00000494776 F5H697 171 aa10.89□□□□□ -0.67
LIME1-209ENST00000494776 SRP19P09132 144 aaKnown RBP10.89□□□□□ -0.67
LIME1-209ENST00000494776 IGLC6P0CF74 106 aa10.89□□□□□ -0.67
LIME1-209ENST00000494776 EVI2AP22794 236 aa10.89□□□□□ -0.67
LIME1-209ENST00000494776 RAB4BP61018 213 aa10.89□□□□□ -0.67
LIME1-209ENST00000494776 CACNG7P62955 275 aa10.89□□□□□ -0.67
LIME1-209ENST00000494776 AP1S3Q96PC3 154 aa10.89□□□□□ -0.67
LIME1-209ENST00000494776 KRTAP1-5Q9BYS1 174 aa10.89□□□□□ -0.67
LIME1-209ENST00000494776 LYZL1Q6UWQ5 148 aa10.88□□□□□ -0.67
LIME1-209ENST00000494776 GATCO43716 136 aaKnown RBP10.87□□□□□ -0.67
LIME1-209ENST00000494776 ERVFC1-1P60608 527 aa10.87□□□□□ -0.67
LIME1-209ENST00000494776 RPL36AP83881 106 aaKnown RBP10.87□□□□□ -0.67
LIME1-209ENST00000494776 PEA15Q15121 130 aa10.87□□□□□ -0.67
LIME1-209ENST00000494776 LELP1Q5T871 98 aa10.87□□□□□ -0.67
LIME1-209ENST00000494776 RPL36ALQ969Q0 106 aaKnown RBP10.87□□□□□ -0.67
LIME1-209ENST00000494776 Q9UF83 564 aa10.87□□□□□ -0.67
LIME1-209ENST00000494776 IGHV3-38A0A0C4DH36 116 aa10.86□□□□□ -0.67
LIME1-209ENST00000494776 TRBV10-1A0A0K0K1A3 114 aa10.86□□□□□ -0.67
LIME1-209ENST00000494776 MGPP08493 103 aa10.86□□□□□ -0.67
LIME1-209ENST00000494776 BTF3P20290 206 aaKnown RBP10.86□□□□□ -0.67
LIME1-209ENST00000494776 K7EP13 123 aa10.85□□□□□ -0.67
LIME1-209ENST00000494776 TRGC1P0CF51 173 aa10.85□□□□□ -0.67
LIME1-209ENST00000494776 DNAH10OSP0CZ25 163 aa10.85□□□□□ -0.67
LIME1-209ENST00000494776 LINC00694P0DN24 101 aa10.85□□□□□ -0.67
LIME1-209ENST00000494776 LINC00315P59091 139 aa10.85□□□□□ -0.67
LIME1-209ENST00000494776 FAM231DQ6ZW35 169 aa10.85□□□□□ -0.67
LIME1-209ENST00000494776 MSRB1Q9NZV6 116 aa10.85□□□□□ -0.67
LIME1-209ENST00000494776 TRBV7-3A0A075B6L6 115 aa10.84□□□□□ -0.67
LIME1-209ENST00000494776 A0A087WWC5 75 aa10.84□□□□□ -0.67
LIME1-209ENST00000494776 A8MWL6 223 aa10.84□□□□□ -0.67
LIME1-209ENST00000494776 NTF3P20783 257 aa10.84□□□□□ -0.67
LIME1-209ENST00000494776 RAB14P61106 215 aa10.84□□□□□ -0.67
LIME1-209ENST00000494776 TNP2Q05952 138 aa10.84□□□□□ -0.67
LIME1-209ENST00000494776 TWIST1Q15672 202 aa10.84□□□□□ -0.67
LIME1-209ENST00000494776 FAM74A3Q4VXF1 159 aa10.84□□□□□ -0.67
LIME1-209ENST00000494776 LINC01551Q86U37 167 aa10.84□□□□□ -0.67
LIME1-209ENST00000494776 C10orf126Q8N4M7 172 aa10.84□□□□□ -0.67
LIME1-209ENST00000494776 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.84□□□□□ -0.67
LIME1-209ENST00000494776 CTRLP40313 264 aa10.83□□□□□ -0.68
LIME1-209ENST00000494776 TMEM241Q24JQ0 296 aa10.83□□□□□ -0.68
LIME1-209ENST00000494776 WDR73Q6P4I2 378 aa10.83□□□□□ -0.68
LIME1-209ENST00000494776 HECTD4Q9Y4D8 3996 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 A0A1B0GVY2 172 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 IGHV3-30P01768 117 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 IGHV3-33P01772 117 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 IGHV3-30-3P0DP02 117 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 IGHV3-30-5P0DP03 117 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 SRSF3P84103 164 aaKnown RBP10.82□□□□□ -0.68
LIME1-209ENST00000494776 LINC01556Q5JQF7 62 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 NFE4Q86UQ8 179 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 NEXN-AS1Q8NBZ9 246 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 SMDT1Q9H4I9 107 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 KIF25-AS1Q9Y6Z4 181 aa10.82□□□□□ -0.68
LIME1-209ENST00000494776 C9JQL5 133 aa10.81□□□□□ -0.68
LIME1-209ENST00000494776 H7C1H1 209 aa10.81□□□□□ -0.68
LIME1-209ENST00000494776 UBE2D3P61077 147 aa10.81□□□□□ -0.68
LIME1-209ENST00000494776 UBE2D2P62837 147 aa10.81□□□□□ -0.68
LIME1-209ENST00000494776 SMIM15Q7Z3B0 74 aa10.81□□□□□ -0.68
LIME1-209ENST00000494776 C15orf54Q8N8G6 183 aa10.81□□□□□ -0.68
LIME1-209ENST00000494776 OR10G8Q8NGN5 311 aa10.81□□□□□ -0.68
LIME1-209ENST00000494776 BORCS7Q96B45 105 aa10.81□□□□□ -0.68
LIME1-209ENST00000494776 DPH3P1Q9H4G8 78 aa10.81□□□□□ -0.68
LIME1-209ENST00000494776 TNFRSF18Q9Y5U5 241 aa10.81□□□□□ -0.68
LIME1-209ENST00000494776 DNAH2Q9P225 4427 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms