RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 VWC2LB2RUY7 222 aa12.61□□□□□ -0.39
CCDC88B-209ENST00000494080 SPANXA1Q9NS26 97 aa12.61□□□□□ -0.39
CCDC88B-209ENST00000494080 IGKV2D-26A0A0A0MRZ7 120 aa12.6□□□□□ -0.39
CCDC88B-209ENST00000494080 XCL2Q9UBD3 114 aa12.6□□□□□ -0.39
CCDC88B-209ENST00000494080 CFC1BP0CG36 223 aa12.6□□□□□ -0.39
CCDC88B-209ENST00000494080 CFC1P0CG37 223 aa12.6□□□□□ -0.39
CCDC88B-209ENST00000494080 ZNF625Q96I27 306 aaPredicted RBP12.6□□□□□ -0.39
CCDC88B-209ENST00000494080 MT-ATP8P03928 68 aa12.6□□□□□ -0.39
CCDC88B-209ENST00000494080 INS-IGF2F8WCM5 200 aa12.59□□□□□ -0.39
CCDC88B-209ENST00000494080 Q71RC1 249 aaPredicted RBP12.59□□□□□ -0.39
CCDC88B-209ENST00000494080 IGHV7-4-1A0A0J9YVY3 117 aa12.59□□□□□ -0.39
CCDC88B-209ENST00000494080 ADARB2-AS1A8MUL3 147 aa12.59□□□□□ -0.39
CCDC88B-209ENST00000494080 E9PLD3 99 aa12.59□□□□□ -0.39
CCDC88B-209ENST00000494080 ZNF493Q6ZR52 646 aa12.59□□□□□ -0.39
CCDC88B-209ENST00000494080 C1orf159Q96HA4 380 aa12.59□□□□□ -0.39
CCDC88B-209ENST00000494080 TMEM141Q96I45 108 aa12.59□□□□□ -0.39
CCDC88B-209ENST00000494080 ATG2AQ2TAZ0 1938 aa12.59□□□□□ -0.39
CCDC88B-209ENST00000494080 ANKRD29Q8N6D5 301 aa12.58□□□□□ -0.4
CCDC88B-209ENST00000494080 FANCD2OSQ96PS1 177 aa12.58□□□□□ -0.4
CCDC88B-209ENST00000494080 BPTFQ12830 3046 aa12.58□□□□□ -0.4
CCDC88B-209ENST00000494080 DEFB136Q30KP8 78 aa12.58□□□□□ -0.4
CCDC88B-209ENST00000494080 LY6G5BQ8NDX9 201 aa12.58□□□□□ -0.4
CCDC88B-209ENST00000494080 RPL39LQ96EH5 51 aaKnown RBP12.58□□□□□ -0.4
CCDC88B-209ENST00000494080 URB1-AS1Q96HZ7 61 aa12.58□□□□□ -0.4
CCDC88B-209ENST00000494080 SIRPDQ9H106 197 aa12.58□□□□□ -0.4
CCDC88B-209ENST00000494080 ZNF462Q96JM2 2506 aa12.58□□□□□ -0.4
CCDC88B-209ENST00000494080 CHCHD5Q9BSY4 110 aa12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 POLQO75417 2590 aa12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 J3QLI3 93 aa12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 BUB3O43684 328 aa12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 ZNF415Q09FC8 603 aa12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 GAGE2AQ6NT46 116 aa12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 CRYGCP07315 174 aa12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 MORN3Q6PF18 240 aaPredicted RBP12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 C5orf56Q8N8D9 126 aa12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 PHLDA1Q8WV24 401 aaPredicted RBP12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 PKD1L2Q7Z442 2459 aa12.57□□□□□ -0.4
CCDC88B-209ENST00000494080 CARD19Q96LW7 228 aa12.56□□□□□ -0.4
CCDC88B-209ENST00000494080 LMO4P61968 165 aa12.56□□□□□ -0.4
CCDC88B-209ENST00000494080 Q6ZUT4 128 aa12.56□□□□□ -0.4
CCDC88B-209ENST00000494080 A4D1N5 150 aa12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 LINC01619G3V211 115 aa12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 AJUBAQ96IF1 538 aa12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 PRAC2D3DTV9 90 aa12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 FN1P02751 2386 aaKnown RBP12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 LINC01548A6NM66 108 aa12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 TM2D2Q9BX73 214 aa12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 VPREB3Q9UKI3 123 aa12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 INSP01308 110 aa12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 HIST1H4AP62805 103 aaKnown RBP12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 CDSNQ15517 529 aa12.55□□□□□ -0.4
CCDC88B-209ENST00000494080 PRRC2AP48634 2157 aaKnown RBP12.54□□□□□ -0.4
CCDC88B-209ENST00000494080 J3QKU1 62 aa12.54□□□□□ -0.4
CCDC88B-209ENST00000494080 DEFB1P60022 68 aa12.54□□□□□ -0.4
CCDC88B-209ENST00000494080 NDUFA12Q9UI09 145 aa12.54□□□□□ -0.4
CCDC88B-209ENST00000494080 GNRH2O43555 120 aa12.54□□□□□ -0.4
CCDC88B-209ENST00000494080 LGALS1P09382 135 aaKnown RBP12.54□□□□□ -0.4
CCDC88B-209ENST00000494080 TRANK1O15050 2925 aa12.54□□□□□ -0.4
CCDC88B-209ENST00000494080 MTORP42345 2549 aa12.53□□□□□ -0.4
CCDC88B-209ENST00000494080 IGHV3-16A0A0C4DH30 117 aa12.53□□□□□ -0.4
CCDC88B-209ENST00000494080 EPG5Q9HCE0 2579 aa12.53□□□□□ -0.4
CCDC88B-209ENST00000494080 ELANEP08246 267 aa12.53□□□□□ -0.4
CCDC88B-209ENST00000494080 EXPH5Q8NEV8 1989 aa12.53□□□□□ -0.4
CCDC88B-209ENST00000494080 HOXD3P31249 432 aaPredicted RBP12.53□□□□□ -0.4
CCDC88B-209ENST00000494080 UFSP1Q6NVU6 142 aa12.53□□□□□ -0.4
CCDC88B-209ENST00000494080 CPAMD8Q8IZJ3 1885 aa12.53□□□□□ -0.4
CCDC88B-209ENST00000494080 IGHV1OR15-1A0A075B7D0 117 aa12.52□□□□□ -0.4
CCDC88B-209ENST00000494080 TRBV6-1A0A0K0K1D8 114 aa12.52□□□□□ -0.4
CCDC88B-209ENST00000494080 MYCNOSP40205 109 aa12.52□□□□□ -0.4
CCDC88B-209ENST00000494080 WI2-2373I1.2A0A1W2PRP0 233 aa12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 ZNF80P51504 273 aaPredicted RBP12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 ZFP2Q6ZN57 461 aa12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 TRPT1Q86TN4 253 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 PRIMA1Q86XR5 153 aa12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 MAPKAPK5-AS1Q8N8E1 139 aa12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 FASNP49327 2511 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 RPL36AP83881 106 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 SVIPQ8NHG7 77 aa12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 RPL36ALQ969Q0 106 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 C11orf68Q9H3H3 251 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-209ENST00000494080 GATD1Q8NB37 220 aa12.51□□□□□ -0.41
CCDC88B-209ENST00000494080 ATP6V0E2Q8NHE4 81 aa12.51□□□□□ -0.41
CCDC88B-209ENST00000494080 INSL3P51460 131 aa12.51□□□□□ -0.41
CCDC88B-209ENST00000494080 DEFB113Q30KQ7 82 aa12.51□□□□□ -0.41
CCDC88B-209ENST00000494080 RBMY1BA6NDE4 496 aaKnown RBP12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 RBMY1EA6NEQ0 496 aaKnown RBP12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 H3BUA1 57 aa12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 CRPP02741 224 aa12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 RBMY1DP0C7P1 496 aaKnown RBP12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 RBMY1A1P0DJD3 496 aaKnown RBP12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 RBMY1CP0DJD4 496 aa12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 LINC00158P58513 81 aa12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 CRIP1P50238 77 aa12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 DEFB130BP0DP73 79 aa12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 DEFB130AP0DP74 79 aa12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 LINC01620Q4KN68 170 aa12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 TRAV13-1A0A0B4J241 112 aa12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 PRORYQ9H606 182 aa12.5□□□□□ -0.41
CCDC88B-209ENST00000494080 TRAV12-1A0A0B4J245 112 aa12.49□□□□□ -0.41
CCDC88B-209ENST00000494080 TRBV12-3P01733 135 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 631.3 ms