RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PTH2Q96A98 100 aa12.13□□□□□ -0.47
VIM-205ENST00000485947 C16orf74Q96GX8 76 aa12.13□□□□□ -0.47
VIM-205ENST00000485947 MDFICQ9P1T7 246 aa12.13□□□□□ -0.47
VIM-205ENST00000485947 TIMM8BQ9Y5J9 83 aaPredicted RBP12.13□□□□□ -0.47
VIM-205ENST00000485947 IGLL5B9A064 214 aa12.12□□□□□ -0.47
VIM-205ENST00000485947 TWIST1Q15672 202 aa12.12□□□□□ -0.47
VIM-205ENST00000485947 C12orf74Q32Q52 190 aa12.12□□□□□ -0.47
VIM-205ENST00000485947 PIK3CD-AS1Q5SR53 167 aa12.12□□□□□ -0.47
VIM-205ENST00000485947 TMEM136Q6ZRR5 245 aa12.12□□□□□ -0.47
VIM-205ENST00000485947 SYT8Q8NBV8 401 aa12.12□□□□□ -0.47
VIM-205ENST00000485947 RNASE8Q8TDE3 154 aaKnown RBP12.12□□□□□ -0.47
VIM-205ENST00000485947 APLNQ9ULZ1 77 aa12.12□□□□□ -0.47
VIM-205ENST00000485947 ALMS1Q8TCU4 4167 aa12.12□□□□□ -0.47
VIM-205ENST00000485947 SNURFLB1AK76 121 aa12.11□□□□□ -0.47
VIM-205ENST00000485947 TRGC1P0CF51 173 aa12.11□□□□□ -0.47
VIM-205ENST00000485947 CAMPP49913 170 aa12.11□□□□□ -0.47
VIM-205ENST00000485947 NDUFAF3Q9BU61 184 aa12.11□□□□□ -0.47
VIM-205ENST00000485947 DEFB131BA0A096LNP1 70 aa12.1□□□□□ -0.47
VIM-205ENST00000485947 MUC21A0A0G2JKD1 596 aa12.1□□□□□ -0.47
VIM-205ENST00000485947 MUC21A0A140T8X8 626 aa12.1□□□□□ -0.47
VIM-205ENST00000485947 AZU1P20160 251 aa12.1□□□□□ -0.47
VIM-205ENST00000485947 RAB4BP61018 213 aa12.1□□□□□ -0.47
VIM-205ENST00000485947 SMIM15Q7Z3B0 74 aa12.1□□□□□ -0.47
VIM-205ENST00000485947 CELA1Q9UNI1 258 aa12.1□□□□□ -0.47
VIM-205ENST00000485947 TRAPPC1Q9Y5R8 145 aa12.1□□□□□ -0.47
VIM-205ENST00000485947 MUC4Q99102 2169 aa12.1□□□□□ -0.47
VIM-205ENST00000485947 M0R2P5 195 aa12.09□□□□□ -0.47
VIM-205ENST00000485947 M0R381 172 aa12.09□□□□□ -0.47
VIM-205ENST00000485947 AP1S3Q96PC3 154 aa12.09□□□□□ -0.47
VIM-205ENST00000485947 TMEM191AQ9H0A3 160 aa12.09□□□□□ -0.47
VIM-205ENST00000485947 GSN-AS1Q9NRJ2 163 aa12.09□□□□□ -0.47
VIM-205ENST00000485947 DKK2Q9UBU2 259 aa12.09□□□□□ -0.47
VIM-205ENST00000485947 DAZ2Q13117 558 aaKnown RBP12.08□□□□□ -0.48
VIM-205ENST00000485947 MRPL18Q9H0U6 180 aaKnown RBP12.08□□□□□ -0.48
VIM-205ENST00000485947 MSRB1Q9NZV6 116 aa12.08□□□□□ -0.48
VIM-205ENST00000485947 PRM2P04554 102 aa12.07□□□□□ -0.48
VIM-205ENST00000485947 SSTP61278 116 aa12.07□□□□□ -0.48
VIM-205ENST00000485947 DMRTA1Q5VZB9 504 aa12.07□□□□□ -0.48
VIM-205ENST00000485947 FRZBQ92765 325 aa12.07□□□□□ -0.48
VIM-205ENST00000485947 C1orf196B1AJZ1 125 aa12.06□□□□□ -0.48
VIM-205ENST00000485947 TRGC2P03986 189 aa12.06□□□□□ -0.48
VIM-205ENST00000485947 LGALS9BQ3B8N2 356 aa12.06□□□□□ -0.48
VIM-205ENST00000485947 ZNF876PQ49A33 203 aa12.06□□□□□ -0.48
VIM-205ENST00000485947 PLAC8L1A1L4L8 177 aa12.05□□□□□ -0.48
VIM-205ENST00000485947 LYRM9A8MSI8 78 aa12.05□□□□□ -0.48
VIM-205ENST00000485947 APCSP02743 223 aa12.05□□□□□ -0.48
VIM-205ENST00000485947 EMP1P54849 157 aa12.05□□□□□ -0.48
VIM-205ENST00000485947 FABP9Q0Z7S8 132 aa12.05□□□□□ -0.48
VIM-205ENST00000485947 FAM222AQ5U5X8 452 aa12.05□□□□□ -0.48
VIM-205ENST00000485947 FAM104BQ5XKR9 115 aa12.05□□□□□ -0.48
VIM-205ENST00000485947 RASL10AQ92737 203 aa12.05□□□□□ -0.48
VIM-205ENST00000485947 DPH3P1Q9H4G8 78 aa12.05□□□□□ -0.48
VIM-205ENST00000485947 A8MWV9 139 aa12.04□□□□□ -0.48
VIM-205ENST00000485947 P0DMU3 169 aa12.04□□□□□ -0.48
VIM-205ENST00000485947 FAM231AP0DMU4 169 aa12.04□□□□□ -0.48
VIM-205ENST00000485947 FAM231CP0DMU5 169 aa12.04□□□□□ -0.48
VIM-205ENST00000485947 PHOX2AO14813 284 aa12.03□□□□□ -0.48
VIM-205ENST00000485947 SMIM17P0DL12 118 aa12.03□□□□□ -0.48
VIM-205ENST00000485947 EVI2AP22794 236 aa12.03□□□□□ -0.48
VIM-205ENST00000485947 SLAQ13239 276 aa12.03□□□□□ -0.48
VIM-205ENST00000485947 RAB5BP61020 215 aa12.02□□□□□ -0.49
VIM-205ENST00000485947 AMN1Q8IY45 258 aa12.02□□□□□ -0.49
VIM-205ENST00000485947 NOP10Q9NPE3 64 aaKnown RBP12.02□□□□□ -0.49
VIM-205ENST00000485947 MRPL16Q9NX20 251 aaKnown RBP12.02□□□□□ -0.49
VIM-205ENST00000485947 TRGV1A0A0A0MS02 117 aa12.01□□□□□ -0.49
VIM-205ENST00000485947 RAB4AP20338 218 aa12.01□□□□□ -0.49
VIM-205ENST00000485947 DAD1P61803 113 aa12.01□□□□□ -0.49
VIM-205ENST00000485947 C14orf178Q8N769 122 aaPredicted RBP12.01□□□□□ -0.49
VIM-205ENST00000485947 RNF185Q96GF1 192 aa12.01□□□□□ -0.49
VIM-205ENST00000485947 KIF25-AS1Q9Y6Z4 181 aa12.01□□□□□ -0.49
VIM-205ENST00000485947 RHODO00212 210 aa12□□□□□ -0.49
VIM-205ENST00000485947 RS1O15537 224 aa12□□□□□ -0.49
VIM-205ENST00000485947 PPBPP02775 128 aa12□□□□□ -0.49
VIM-205ENST00000485947 POM121L12Q8N7R1 296 aa12□□□□□ -0.49
VIM-205ENST00000485947 CIDEAO60543 219 aa11.99□□□□□ -0.49
VIM-205ENST00000485947 CRYGDP07320 174 aa11.99□□□□□ -0.49
VIM-205ENST00000485947 MRPL51Q4U2R6 128 aaKnown RBP11.99□□□□□ -0.49
VIM-205ENST00000485947 MRAP2Q96G30 205 aa11.99□□□□□ -0.49
VIM-205ENST00000485947 JPT2Q9H910 190 aa11.99□□□□□ -0.49
VIM-205ENST00000485947 TRAV4A0A0B4J268 109 aa11.98□□□□□ -0.49
VIM-205ENST00000485947 MGPP08493 103 aa11.98□□□□□ -0.49
VIM-205ENST00000485947 KIAA1644Q3SXP7 199 aa11.98□□□□□ -0.49
VIM-205ENST00000485947 ZFP2Q6ZN57 461 aa11.98□□□□□ -0.49
VIM-205ENST00000485947 Q6ZTI0 123 aa11.98□□□□□ -0.49
VIM-205ENST00000485947 ORMDL3Q8N138 153 aa11.98□□□□□ -0.49
VIM-205ENST00000485947 LINC00612Q8N6U2 182 aa11.98□□□□□ -0.49
VIM-205ENST00000485947 C18orf15Q96N68 181 aa11.98□□□□□ -0.49
VIM-205ENST00000485947 A0A087WWL8 130 aa11.97□□□□□ -0.49
VIM-205ENST00000485947 CKS2P33552 79 aa11.97□□□□□ -0.49
VIM-205ENST00000485947 LINC00315P59091 139 aa11.97□□□□□ -0.49
VIM-205ENST00000485947 CFAP126Q5VTH2 177 aa11.97□□□□□ -0.49
VIM-205ENST00000485947 C15orf53Q8NAA6 179 aa11.97□□□□□ -0.49
VIM-205ENST00000485947 ALKBH7Q9BT30 221 aaPredicted RBP11.97□□□□□ -0.49
VIM-205ENST00000485947 LAMTOR2Q9Y2Q5 125 aa11.97□□□□□ -0.49
VIM-205ENST00000485947 NACAE9PAV3 2078 aa11.97□□□□□ -0.49
VIM-205ENST00000485947 HECTD4Q9Y4D8 3996 aa11.97□□□□□ -0.49
VIM-205ENST00000485947 KMT2AQ03164 3969 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 D6R8Y8 96 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 HIST1H2BKO60814 126 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 HIST1H2BJP06899 126 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms