RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 ERVFC1-1P60608 527 aa12.97□□□□□ -0.33
COL7A1-207ENST00000467985 FAM162BQ5T6X4 162 aa12.97□□□□□ -0.33
COL7A1-207ENST00000467985 C10orf126Q8N4M7 172 aa12.97□□□□□ -0.33
COL7A1-207ENST00000467985 SMIM12Q96EX1 92 aa12.97□□□□□ -0.33
COL7A1-207ENST00000467985 PGPEP1LA6NFU8 196 aa12.96□□□□□ -0.33
COL7A1-207ENST00000467985 COX8CQ7Z4L0 72 aa12.96□□□□□ -0.33
COL7A1-207ENST00000467985 DAZAP1Q96EP5 407 aaKnown RBP12.96□□□□□ -0.33
COL7A1-207ENST00000467985 MSRB1Q9NZV6 116 aa12.96□□□□□ -0.33
COL7A1-207ENST00000467985 DNAH5Q8TE73 4624 aa12.96□□□□□ -0.33
COL7A1-207ENST00000467985 HSPG2P98160 4391 aa12.96□□□□□ -0.34
COL7A1-207ENST00000467985 TRBV20OR9-2A0A075B6H5 130 aa12.95□□□□□ -0.34
COL7A1-207ENST00000467985 IGKV3D-20A0A0C4DH25 116 aa12.95□□□□□ -0.34
COL7A1-207ENST00000467985 A8MWV9 139 aa12.95□□□□□ -0.34
COL7A1-207ENST00000467985 KRTAP10-2P60368 255 aa12.95□□□□□ -0.34
COL7A1-207ENST00000467985 ZFP2Q6ZN57 461 aa12.95□□□□□ -0.34
COL7A1-207ENST00000467985 IGHV3-73A0A0B4J1V6 119 aa12.94□□□□□ -0.34
COL7A1-207ENST00000467985 B4DEV8 164 aa12.94□□□□□ -0.34
COL7A1-207ENST00000467985 SH2D1AO60880 128 aa12.94□□□□□ -0.34
COL7A1-207ENST00000467985 CRYGDP07320 174 aa12.94□□□□□ -0.34
COL7A1-207ENST00000467985 TMEM241Q24JQ0 296 aa12.94□□□□□ -0.34
COL7A1-207ENST00000467985 MLST8Q9BVC4 326 aa12.94□□□□□ -0.34
COL7A1-207ENST00000467985 PGPEP1Q9NXJ5 209 aa12.94□□□□□ -0.34
COL7A1-207ENST00000467985 IL36BQ9NZH7 164 aa12.94□□□□□ -0.34
COL7A1-207ENST00000467985 TRAV8-6A0A0B4J262 113 aa12.93□□□□□ -0.34
COL7A1-207ENST00000467985 IGHV3-38A0A0C4DH36 116 aa12.93□□□□□ -0.34
COL7A1-207ENST00000467985 DNLZQ5SXM8 178 aa12.93□□□□□ -0.34
COL7A1-207ENST00000467985 NAT8Q9UHE5 227 aa12.93□□□□□ -0.34
COL7A1-207ENST00000467985 TNFRSF18Q9Y5U5 241 aa12.93□□□□□ -0.34
COL7A1-207ENST00000467985 ABCA13Q86UQ4 5058 aa12.93□□□□□ -0.34
COL7A1-207ENST00000467985 IGLV2-8P01709 118 aa12.92□□□□□ -0.34
COL7A1-207ENST00000467985 ADIRFQ15847 76 aa12.92□□□□□ -0.34
COL7A1-207ENST00000467985 OCC1Q8TAD7 63 aa12.92□□□□□ -0.34
COL7A1-207ENST00000467985 KRBOX1C9JBD0 128 aa12.91□□□□□ -0.34
COL7A1-207ENST00000467985 F8W036 122 aa12.91□□□□□ -0.34
COL7A1-207ENST00000467985 M0R036 132 aa12.91□□□□□ -0.34
COL7A1-207ENST00000467985 NDUFA5Q16718 116 aa12.91□□□□□ -0.34
COL7A1-207ENST00000467985 LINC01556Q5JQF7 62 aa12.91□□□□□ -0.34
COL7A1-207ENST00000467985 OR10J3Q5JRS4 329 aa12.91□□□□□ -0.34
COL7A1-207ENST00000467985 CDPF1Q6NVV7 123 aa12.91□□□□□ -0.34
COL7A1-207ENST00000467985 SYT8Q8NBV8 401 aa12.91□□□□□ -0.34
COL7A1-207ENST00000467985 GTSF1LQ9H1H1 148 aa12.91□□□□□ -0.34
COL7A1-207ENST00000467985 TMEM218A2RU14 115 aa12.9□□□□□ -0.34
COL7A1-207ENST00000467985 CRIP1P50238 77 aa12.9□□□□□ -0.34
COL7A1-207ENST00000467985 LELP1Q5T871 98 aa12.9□□□□□ -0.34
COL7A1-207ENST00000467985 LINC01551Q86U37 167 aa12.9□□□□□ -0.34
COL7A1-207ENST00000467985 ATP6V0E2Q8NHE4 81 aa12.9□□□□□ -0.34
COL7A1-207ENST00000467985 APOBP04114 4563 aaKnown RBP12.9□□□□□ -0.34
COL7A1-207ENST00000467985 H3BVH4 76 aa12.89□□□□□ -0.35
COL7A1-207ENST00000467985 K7EN84 100 aa12.89□□□□□ -0.35
COL7A1-207ENST00000467985 RHODO00212 210 aa12.89□□□□□ -0.35
COL7A1-207ENST00000467985 P01737 135 aa12.89□□□□□ -0.35
COL7A1-207ENST00000467985 MAPKAPK5-AS1Q8N8E1 139 aa12.89□□□□□ -0.35
COL7A1-207ENST00000467985 A0A087WTM6 91 aa12.88□□□□□ -0.35
COL7A1-207ENST00000467985 TMSB15BA0A087X1C1 80 aa12.88□□□□□ -0.35
COL7A1-207ENST00000467985 ARMS2P0C7Q2 107 aa12.88□□□□□ -0.35
COL7A1-207ENST00000467985 LINC01559Q495D7 138 aa12.88□□□□□ -0.35
COL7A1-207ENST00000467985 RPL23P62829 140 aaKnown RBP12.87□□□□□ -0.35
COL7A1-207ENST00000467985 DMRTA1Q5VZB9 504 aa12.87□□□□□ -0.35
COL7A1-207ENST00000467985 UFSP1Q6NVU6 142 aa12.87□□□□□ -0.35
COL7A1-207ENST00000467985 Q6ZSN1 163 aa12.87□□□□□ -0.35
COL7A1-207ENST00000467985 PHLDA3Q9Y5J5 127 aa12.87□□□□□ -0.35
COL7A1-207ENST00000467985 XKRY2A2RUG3 117 aa12.86□□□□□ -0.35
COL7A1-207ENST00000467985 GRIFINA4D1Z8 144 aa12.86□□□□□ -0.35
COL7A1-207ENST00000467985 IBA57-AS1B1ANH7 110 aa12.86□□□□□ -0.35
COL7A1-207ENST00000467985 C15orf54Q8N8G6 183 aa12.86□□□□□ -0.35
COL7A1-207ENST00000467985 OR2D3Q8NGH3 330 aa12.86□□□□□ -0.35
COL7A1-207ENST00000467985 RNASE7Q9H1E1 156 aaKnown RBP12.86□□□□□ -0.35
COL7A1-207ENST00000467985 SCRT2Q9NQ03 307 aa12.86□□□□□ -0.35
COL7A1-207ENST00000467985 GATCO43716 136 aaKnown RBP12.85□□□□□ -0.35
COL7A1-207ENST00000467985 RPL19P84098 196 aaKnown RBP12.85□□□□□ -0.35
COL7A1-207ENST00000467985 PNRC1Q12796 327 aaPredicted RBP12.85□□□□□ -0.35
COL7A1-207ENST00000467985 SLC7A5P1Q8MH63 180 aa12.85□□□□□ -0.35
COL7A1-207ENST00000467985 SEC11CQ9BY50 192 aa12.85□□□□□ -0.35
COL7A1-207ENST00000467985 JPT2Q9H910 190 aa12.85□□□□□ -0.35
COL7A1-207ENST00000467985 A0A087WWC5 75 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 C19orf71A6NCJ1 209 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 GAGE12JA6NER3 117 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 PSCAO43653 123 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 LINC00694P0DN24 101 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 RPS20P60866 119 aaKnown RBP12.84□□□□□ -0.35
COL7A1-207ENST00000467985 GAGE1Q13065 139 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 GAGE4Q13068 117 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 GAGE5Q13069 117 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 GAGE13Q4V321 117 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 ZFP82Q8N141 532 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 NUDT10Q8NFP7 164 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 ISOC2Q96AB3 205 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 NUDT11Q96G61 164 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 SFRP2Q96HF1 295 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 SAMD10Q9BYL1 202 aa12.84□□□□□ -0.35
COL7A1-207ENST00000467985 RPP21Q9H633 154 aaKnown RBP12.84□□□□□ -0.35
COL7A1-207ENST00000467985 ADCYAP1P18509 176 aa12.83□□□□□ -0.36
COL7A1-207ENST00000467985 LAGE3Q14657 143 aa12.83□□□□□ -0.36
COL7A1-207ENST00000467985 FAM231DQ6ZW35 169 aa12.83□□□□□ -0.36
COL7A1-207ENST00000467985 Q8N1X5 172 aa12.83□□□□□ -0.36
COL7A1-207ENST00000467985 M0R381 172 aa12.82□□□□□ -0.36
COL7A1-207ENST00000467985 FAM74A4Q5TZK3 123 aa12.82□□□□□ -0.36
COL7A1-207ENST00000467985 C14orf178Q8N769 122 aaPredicted RBP12.82□□□□□ -0.36
COL7A1-207ENST00000467985 OR10G8Q8NGN5 311 aa12.82□□□□□ -0.36
COL7A1-207ENST00000467985 KRTAP4-5Q9BYR2 181 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms