RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 JPT2Q9H910 190 aa13.79□□□□□ -0.2
COL9A3-204ENST00000463487 A0A087WWL8 130 aa13.78□□□□□ -0.2
COL9A3-204ENST00000463487 A0A096LPF7 62 aa13.78□□□□□ -0.2
COL9A3-204ENST00000463487 MUC21A0A0G2JKD1 596 aa13.78□□□□□ -0.2
COL9A3-204ENST00000463487 MUC21A0A140T8X8 626 aa13.78□□□□□ -0.2
COL9A3-204ENST00000463487 TRGC1P0CF51 173 aa13.78□□□□□ -0.2
COL9A3-204ENST00000463487 CTRLP40313 264 aa13.78□□□□□ -0.2
COL9A3-204ENST00000463487 SSTP61278 116 aa13.78□□□□□ -0.2
COL9A3-204ENST00000463487 LYZL1Q6UWQ5 148 aa13.78□□□□□ -0.2
COL9A3-204ENST00000463487 NEGR1Q7Z3B1 354 aa13.78□□□□□ -0.2
COL9A3-204ENST00000463487 SLC25A29Q8N8R3 303 aa13.78□□□□□ -0.2
COL9A3-204ENST00000463487 DYNC2H1Q8NCM8 4307 aaKnown RBP13.77□□□□□ -0.2
COL9A3-204ENST00000463487 NACAE9PAV3 2078 aa13.77□□□□□ -0.21
COL9A3-204ENST00000463487 SAMD10Q9BYL1 202 aa13.77□□□□□ -0.21
COL9A3-204ENST00000463487 GFRA4Q9GZZ7 299 aa13.77□□□□□ -0.21
COL9A3-204ENST00000463487 FAM231BA6NCW3 169 aa13.76□□□□□ -0.21
COL9A3-204ENST00000463487 K7EQD1 137 aa13.76□□□□□ -0.21
COL9A3-204ENST00000463487 CRYGDP07320 174 aa13.76□□□□□ -0.21
COL9A3-204ENST00000463487 PNRC1Q12796 327 aaPredicted RBP13.76□□□□□ -0.21
COL9A3-204ENST00000463487 ZNF56Q15929 161 aa13.76□□□□□ -0.21
COL9A3-204ENST00000463487 UFSP1Q6NVU6 142 aa13.76□□□□□ -0.21
COL9A3-204ENST00000463487 OR10G8Q8NGN5 311 aa13.76□□□□□ -0.21
COL9A3-204ENST00000463487 TSKUQ8WUA8 353 aa13.76□□□□□ -0.21
COL9A3-204ENST00000463487 SMIM15Q7Z3B0 74 aa13.75□□□□□ -0.21
COL9A3-204ENST00000463487 RAB4BP61018 213 aa13.74□□□□□ -0.21
COL9A3-204ENST00000463487 TWIST1Q15672 202 aa13.74□□□□□ -0.21
COL9A3-204ENST00000463487 COMMD7Q86VX2 200 aa13.74□□□□□ -0.21
COL9A3-204ENST00000463487 C14orf178Q8N769 122 aaPredicted RBP13.74□□□□□ -0.21
COL9A3-204ENST00000463487 CNFNQ9BYD5 112 aa13.74□□□□□ -0.21
COL9A3-204ENST00000463487 NTF3P20783 257 aa13.73□□□□□ -0.21
COL9A3-204ENST00000463487 GTSF1Q8WW33 167 aa13.73□□□□□ -0.21
COL9A3-204ENST00000463487 V9GYV3 84 aa13.73□□□□□ -0.21
COL9A3-204ENST00000463487 TRBV10-1A0A0K0K1A3 114 aa13.72□□□□□ -0.21
COL9A3-204ENST00000463487 F5H697 171 aa13.72□□□□□ -0.21
COL9A3-204ENST00000463487 FOXA3P55318 350 aaPredicted RBP13.72□□□□□ -0.21
COL9A3-204ENST00000463487 PGLYRP4Q96LB8 373 aa13.72□□□□□ -0.21
COL9A3-204ENST00000463487 LINC00588Q9Y4M8 146 aa13.72□□□□□ -0.21
COL9A3-204ENST00000463487 LOC100131303A0A0U1RQF7 123 aa13.71□□□□□ -0.21
COL9A3-204ENST00000463487 HIGD1CA8MV81 97 aa13.71□□□□□ -0.21
COL9A3-204ENST00000463487 PPP1R2P9O14990 202 aa13.71□□□□□ -0.21
COL9A3-204ENST00000463487 ESRGQ1W209 222 aa13.71□□□□□ -0.21
COL9A3-204ENST00000463487 MRPS16Q9Y3D3 137 aaKnown RBP13.71□□□□□ -0.21
COL9A3-204ENST00000463487 ALMS1Q8TCU4 4167 aa13.7□□□□□ -0.22
COL9A3-204ENST00000463487 LINC00862A6NCI5 91 aa13.7□□□□□ -0.22
COL9A3-204ENST00000463487 H7C1H1 209 aa13.7□□□□□ -0.22
COL9A3-204ENST00000463487 MGPP08493 103 aa13.7□□□□□ -0.22
COL9A3-204ENST00000463487 Q6ZSN1 163 aa13.7□□□□□ -0.22
COL9A3-204ENST00000463487 DPH3P1Q9H4G8 78 aa13.7□□□□□ -0.22
COL9A3-204ENST00000463487 MSRB1Q9NZV6 116 aa13.7□□□□□ -0.22
COL9A3-204ENST00000463487 NAT8BQ9UHF3 227 aa13.7□□□□□ -0.22
COL9A3-204ENST00000463487 PLECQ15149 4684 aaKnown RBP13.69□□□□□ -0.22
COL9A3-204ENST00000463487 LYSTQ99698 3801 aa13.69□□□□□ -0.22
COL9A3-204ENST00000463487 A0A1B0GUT8 65 aa13.69□□□□□ -0.22
COL9A3-204ENST00000463487 TMEM218A2RU14 115 aa13.69□□□□□ -0.22
COL9A3-204ENST00000463487 F8W036 122 aa13.69□□□□□ -0.22
COL9A3-204ENST00000463487 RPL36AP83881 106 aaKnown RBP13.69□□□□□ -0.22
COL9A3-204ENST00000463487 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.69□□□□□ -0.22
COL9A3-204ENST00000463487 RPL36ALQ969Q0 106 aaKnown RBP13.69□□□□□ -0.22
COL9A3-204ENST00000463487 UPK3BQ9BT76 320 aa13.69□□□□□ -0.22
COL9A3-204ENST00000463487 GAGE12JA6NER3 117 aa13.68□□□□□ -0.22
COL9A3-204ENST00000463487 MT-ND4LP03901 98 aa13.68□□□□□ -0.22
COL9A3-204ENST00000463487 EVI2AP22794 236 aa13.68□□□□□ -0.22
COL9A3-204ENST00000463487 GAGE1Q13065 139 aa13.68□□□□□ -0.22
COL9A3-204ENST00000463487 GAGE4Q13068 117 aa13.68□□□□□ -0.22
COL9A3-204ENST00000463487 GAGE5Q13069 117 aa13.68□□□□□ -0.22
COL9A3-204ENST00000463487 GAGE13Q4V321 117 aa13.68□□□□□ -0.22
COL9A3-204ENST00000463487 LYPD5Q6UWN5 251 aa13.68□□□□□ -0.22
COL9A3-204ENST00000463487 ATP6V0E2Q8NHE4 81 aa13.68□□□□□ -0.22
COL9A3-204ENST00000463487 KIF25-AS1Q9Y6Z4 181 aa13.68□□□□□ -0.22
COL9A3-204ENST00000463487 KMT2CQ8NEZ4 4911 aaKnown RBP13.68□□□□□ -0.22
COL9A3-204ENST00000463487 TIRAPP58753 221 aa13.67□□□□□ -0.22
COL9A3-204ENST00000463487 RIGQ13278 110 aa13.67□□□□□ -0.22
COL9A3-204ENST00000463487 ZNRF2Q8NHG8 242 aa13.66□□□□□ -0.22
COL9A3-204ENST00000463487 ANAPC16Q96DE5 110 aa13.66□□□□□ -0.22
COL9A3-204ENST00000463487 SEC11CQ9BY50 192 aa13.66□□□□□ -0.22
COL9A3-204ENST00000463487 TRBV7-3A0A075B6L6 115 aa13.65□□□□□ -0.22
COL9A3-204ENST00000463487 SMIM27A0A1W2PRY6 76 aa13.65□□□□□ -0.22
COL9A3-204ENST00000463487 GTSF1LQ9H1H1 148 aa13.65□□□□□ -0.22
COL9A3-204ENST00000463487 TTC32Q5I0X7 151 aa13.64□□□□□ -0.23
COL9A3-204ENST00000463487 NUP35Q8NFH5 326 aa13.64□□□□□ -0.23
COL9A3-204ENST00000463487 Q9H8V8 135 aa13.64□□□□□ -0.23
COL9A3-204ENST00000463487 IGLV2-18A0A075B6J9 118 aa13.63□□□□□ -0.23
COL9A3-204ENST00000463487 A0A087WWC5 75 aa13.63□□□□□ -0.23
COL9A3-204ENST00000463487 TRAV8-6A0A0B4J262 113 aa13.63□□□□□ -0.23
COL9A3-204ENST00000463487 LINC00315P59091 139 aa13.63□□□□□ -0.23
COL9A3-204ENST00000463487 A0A1B0GW15 77 aa13.62□□□□□ -0.23
COL9A3-204ENST00000463487 SIVA1O15304 175 aa13.62□□□□□ -0.23
COL9A3-204ENST00000463487 S100A8P05109 93 aa13.62□□□□□ -0.23
COL9A3-204ENST00000463487 LINC00694P0DN24 101 aa13.62□□□□□ -0.23
COL9A3-204ENST00000463487 SUMO4Q6EEV6 95 aa13.62□□□□□ -0.23
COL9A3-204ENST00000463487 DNAJC30Q96LL9 226 aa13.62□□□□□ -0.23
COL9A3-204ENST00000463487 TNFRSF18Q9Y5U5 241 aa13.62□□□□□ -0.23
COL9A3-204ENST00000463487 LELP1Q5T871 98 aa13.61□□□□□ -0.23
COL9A3-204ENST00000463487 RASL11AQ6T310 242 aa13.61□□□□□ -0.23
COL9A3-204ENST00000463487 M0QY20 66 aa13.6□□□□□ -0.23
COL9A3-204ENST00000463487 ADCYAP1P18509 176 aa13.6□□□□□ -0.23
COL9A3-204ENST00000463487 OR10J3Q5JRS4 329 aa13.6□□□□□ -0.23
COL9A3-204ENST00000463487 NEXN-AS1Q8NBZ9 246 aa13.6□□□□□ -0.23
COL9A3-204ENST00000463487 FRZBQ92765 325 aa13.6□□□□□ -0.23
COL9A3-204ENST00000463487 TMEM191AQ9H0A3 160 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms