RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 MED9Q9NWA0 146 aa8.64□□□□□ -1.03
PRPF40A-203ENST00000448428 VAX2Q9UIW0 290 aa8.64□□□□□ -1.03
PRPF40A-203ENST00000448428 IGHV3-38A0A0C4DH36 116 aa8.63□□□□□ -1.03
PRPF40A-203ENST00000448428 K7EP13 123 aa8.63□□□□□ -1.03
PRPF40A-203ENST00000448428 RHODO00212 210 aa8.63□□□□□ -1.03
PRPF40A-203ENST00000448428 CXCL1P09341 107 aa8.63□□□□□ -1.03
PRPF40A-203ENST00000448428 GNG4P50150 75 aa8.63□□□□□ -1.03
PRPF40A-203ENST00000448428 NKX2-5P52952 324 aaPredicted RBP8.63□□□□□ -1.03
PRPF40A-203ENST00000448428 OR10AG1Q8NH19 301 aa8.63□□□□□ -1.03
PRPF40A-203ENST00000448428 TRAV8-6A0A0B4J262 113 aa8.62□□□□□ -1.03
PRPF40A-203ENST00000448428 MUC21A0A0G2JKD1 596 aa8.62□□□□□ -1.03
PRPF40A-203ENST00000448428 MUC21A0A140T8X8 626 aa8.62□□□□□ -1.03
PRPF40A-203ENST00000448428 SNAI2O43623 268 aa8.62□□□□□ -1.03
PRPF40A-203ENST00000448428 LINC00694P0DN24 101 aa8.62□□□□□ -1.03
PRPF40A-203ENST00000448428 OR10J3Q5JRS4 329 aa8.62□□□□□ -1.03
PRPF40A-203ENST00000448428 LELP1Q5T871 98 aa8.62□□□□□ -1.03
PRPF40A-203ENST00000448428 BOLA1Q9Y3E2 137 aa8.62□□□□□ -1.03
PRPF40A-203ENST00000448428 PKD1P98161 4303 aa8.61□□□□□ -1.03
PRPF40A-203ENST00000448428 TRBV20OR9-2A0A075B6H5 130 aa8.61□□□□□ -1.03
PRPF40A-203ENST00000448428 C19orf71A6NCJ1 209 aa8.61□□□□□ -1.03
PRPF40A-203ENST00000448428 OR5AL1P0C617 328 aa8.61□□□□□ -1.03
PRPF40A-203ENST00000448428 TAGLN2P37802 199 aaKnown RBP8.61□□□□□ -1.03
PRPF40A-203ENST00000448428 BLOC1S1P78537 153 aa8.61□□□□□ -1.03
PRPF40A-203ENST00000448428 NFE4Q86UQ8 179 aa8.61□□□□□ -1.03
PRPF40A-203ENST00000448428 DAZAP1Q96EP5 407 aaKnown RBP8.61□□□□□ -1.03
PRPF40A-203ENST00000448428 SMIM12Q96EX1 92 aa8.61□□□□□ -1.03
PRPF40A-203ENST00000448428 MSRB1Q9NZV6 116 aa8.61□□□□□ -1.03
PRPF40A-203ENST00000448428 GZMBP10144 247 aa8.6□□□□□ -1.03
PRPF40A-203ENST00000448428 SSTP61278 116 aa8.6□□□□□ -1.03
PRPF40A-203ENST00000448428 LINC01556Q5JQF7 62 aa8.6□□□□□ -1.03
PRPF40A-203ENST00000448428 SPATA12Q7Z6I5 190 aa8.6□□□□□ -1.03
PRPF40A-203ENST00000448428 LYPD6BQ8NI32 183 aa8.6□□□□□ -1.03
PRPF40A-203ENST00000448428 RBFOX3A6NFN3 312 aa8.59□□□□□ -1.03
PRPF40A-203ENST00000448428 C16orf90A8MZG2 172 aa8.59□□□□□ -1.03
PRPF40A-203ENST00000448428 KRTAP10-2P60368 255 aa8.59□□□□□ -1.03
PRPF40A-203ENST00000448428 SPANXN1Q5VSR9 72 aa8.59□□□□□ -1.03
PRPF40A-203ENST00000448428 C10orf126Q8N4M7 172 aa8.59□□□□□ -1.03
PRPF40A-203ENST00000448428 OR2D3Q8NGH3 330 aa8.59□□□□□ -1.03
PRPF40A-203ENST00000448428 IBA57-AS1B1ANH7 110 aa8.58□□□□□ -1.04
PRPF40A-203ENST00000448428 IGHV3-30P01768 117 aa8.58□□□□□ -1.04
PRPF40A-203ENST00000448428 IGHV3-33P01772 117 aa8.58□□□□□ -1.04
PRPF40A-203ENST00000448428 IGLC6P0CF74 106 aa8.58□□□□□ -1.04
PRPF40A-203ENST00000448428 IGHV3-30-3P0DP02 117 aa8.58□□□□□ -1.04
PRPF40A-203ENST00000448428 IGHV3-30-5P0DP03 117 aa8.58□□□□□ -1.04
PRPF40A-203ENST00000448428 RPS20P60866 119 aaKnown RBP8.58□□□□□ -1.04
PRPF40A-203ENST00000448428 RAB4BP61018 213 aa8.58□□□□□ -1.04
PRPF40A-203ENST00000448428 OCC1Q8TAD7 63 aa8.58□□□□□ -1.04
PRPF40A-203ENST00000448428 A0A087WWC5 75 aa8.57□□□□□ -1.04
PRPF40A-203ENST00000448428 TRBV10-1A0A0K0K1A3 114 aa8.57□□□□□ -1.04
PRPF40A-203ENST00000448428 P01737 135 aa8.57□□□□□ -1.04
PRPF40A-203ENST00000448428 Q8N3U1 123 aa8.57□□□□□ -1.04
PRPF40A-203ENST00000448428 FER1L6-AS1Q8NA97 138 aa8.57□□□□□ -1.04
PRPF40A-203ENST00000448428 NUDT10Q8NFP7 164 aa8.57□□□□□ -1.04
PRPF40A-203ENST00000448428 NUDT11Q96G61 164 aa8.57□□□□□ -1.04
PRPF40A-203ENST00000448428 BIN3Q9NQY0 253 aa8.57□□□□□ -1.04
PRPF40A-203ENST00000448428 KIF25-AS1Q9Y6Z4 181 aa8.57□□□□□ -1.04
PRPF40A-203ENST00000448428 PKHD1P08F94 4074 aa8.57□□□□□ -1.04
PRPF40A-203ENST00000448428 TRBV7-3A0A075B6L6 115 aa8.56□□□□□ -1.04
PRPF40A-203ENST00000448428 UBE2D3P61077 147 aa8.56□□□□□ -1.04
PRPF40A-203ENST00000448428 UBE2D2P62837 147 aa8.56□□□□□ -1.04
PRPF40A-203ENST00000448428 RPL36AP83881 106 aaKnown RBP8.56□□□□□ -1.04
PRPF40A-203ENST00000448428 ZNF56Q15929 161 aa8.56□□□□□ -1.04
PRPF40A-203ENST00000448428 RPL36ALQ969Q0 106 aaKnown RBP8.56□□□□□ -1.04
PRPF40A-203ENST00000448428 TPPP3Q9BW30 176 aa8.56□□□□□ -1.04
PRPF40A-203ENST00000448428 A0A087WTM6 91 aa8.55□□□□□ -1.04
PRPF40A-203ENST00000448428 XKRY2A2RUG3 117 aa8.55□□□□□ -1.04
PRPF40A-203ENST00000448428 F5H697 171 aa8.55□□□□□ -1.04
PRPF40A-203ENST00000448428 TMEM250H0YL14 139 aa8.55□□□□□ -1.04
PRPF40A-203ENST00000448428 K7EN84 100 aa8.55□□□□□ -1.04
PRPF40A-203ENST00000448428 ERVFC1-1P60608 527 aa8.55□□□□□ -1.04
PRPF40A-203ENST00000448428 NEXN-AS1Q8NBZ9 246 aa8.55□□□□□ -1.04
PRPF40A-203ENST00000448428 OR10G8Q8NGN5 311 aa8.55□□□□□ -1.04
PRPF40A-203ENST00000448428 F2Z2F3 143 aa8.54□□□□□ -1.04
PRPF40A-203ENST00000448428 EREGO14944 169 aa8.54□□□□□ -1.04
PRPF40A-203ENST00000448428 SMIM17P0DL12 118 aa8.54□□□□□ -1.04
PRPF40A-203ENST00000448428 FUSP35637 526 aaKnown RBP eCLIP8.54□□□□□ -1.04
PRPF40A-203ENST00000448428 CACNG7P62955 275 aa8.54□□□□□ -1.04
PRPF40A-203ENST00000448428 LYZL1Q6UWQ5 148 aa8.54□□□□□ -1.04
PRPF40A-203ENST00000448428 AP1S3Q96PC3 154 aa8.54□□□□□ -1.04
PRPF40A-203ENST00000448428 RNASE7Q9H1E1 156 aaKnown RBP8.54□□□□□ -1.04
PRPF40A-203ENST00000448428 Q9HAA7 133 aa8.54□□□□□ -1.04
PRPF40A-203ENST00000448428 TOR2AQ5JU69 321 aa8.53□□□□□ -1.04
PRPF40A-203ENST00000448428 DAZ4Q86SG3 579 aaKnown RBP8.53□□□□□ -1.04
PRPF40A-203ENST00000448428 EIF5A2Q9GZV4 153 aaKnown RBP8.53□□□□□ -1.04
PRPF40A-203ENST00000448428 DAZ3Q9NR90 486 aaKnown RBP8.53□□□□□ -1.04
PRPF40A-203ENST00000448428 PGPEP1Q9NXJ5 209 aa8.53□□□□□ -1.04
PRPF40A-203ENST00000448428 KIAA1109Q2LD37 5005 aa8.52□□□□□ -1.05
PRPF40A-203ENST00000448428 PSCAO43653 123 aa8.52□□□□□ -1.05
PRPF40A-203ENST00000448428 NTF3P20783 257 aa8.52□□□□□ -1.05
PRPF40A-203ENST00000448428 CEBPGP53567 150 aa8.52□□□□□ -1.05
PRPF40A-203ENST00000448428 LAGE3Q14657 143 aa8.52□□□□□ -1.05
PRPF40A-203ENST00000448428 NIT1Q86X76 327 aa8.52□□□□□ -1.05
PRPF40A-203ENST00000448428 FAM210AQ96ND0 272 aa8.52□□□□□ -1.05
PRPF40A-203ENST00000448428 RPP21Q9H633 154 aaKnown RBP8.52□□□□□ -1.05
PRPF40A-203ENST00000448428 LRCOL1A6NCL2 159 aa8.51□□□□□ -1.05
PRPF40A-203ENST00000448428 M0QY20 66 aa8.51□□□□□ -1.05
PRPF40A-203ENST00000448428 CDK2AP2O75956 126 aa8.51□□□□□ -1.05
PRPF40A-203ENST00000448428 MGPP08493 103 aa8.51□□□□□ -1.05
PRPF40A-203ENST00000448428 CTRLP40313 264 aa8.51□□□□□ -1.05
PRPF40A-203ENST00000448428 WDR73Q6P4I2 378 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms