RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 ASIPP42127 132 aa15.32■□□□□ 0.04
SHOX2-203ENST00000441443 GPHB5Q86YW7 130 aa15.32■□□□□ 0.04
SHOX2-203ENST00000441443 SLC25A29Q8N8R3 303 aa15.32■□□□□ 0.04
SHOX2-203ENST00000441443 CRYBG3Q68DQ2 2970 aa15.32■□□□□ 0.04
SHOX2-203ENST00000441443 TMEM262E9PQX1 116 aa15.31■□□□□ 0.04
SHOX2-203ENST00000441443 USP9YO00507 2555 aaPredicted RBP15.31■□□□□ 0.04
SHOX2-203ENST00000441443 FAM110DQ8TAY7 271 aaPredicted RBP15.31■□□□□ 0.04
SHOX2-203ENST00000441443 CITED1Q99966 193 aa15.31■□□□□ 0.04
SHOX2-203ENST00000441443 ZFAND2AQ8N6M9 145 aa15.3■□□□□ 0.04
SHOX2-203ENST00000441443 CRLF1O75462 422 aa15.3■□□□□ 0.04
SHOX2-203ENST00000441443 TRAV4A0A0B4J268 109 aa15.3■□□□□ 0.04
SHOX2-203ENST00000441443 CENPVL3A0A0U1RRI6 287 aa15.3■□□□□ 0.04
SHOX2-203ENST00000441443 ZNRF2Q8NHG8 242 aa15.3■□□□□ 0.04
SHOX2-203ENST00000441443 MRPL53Q96EL3 112 aaKnown RBP15.3■□□□□ 0.04
SHOX2-203ENST00000441443 VPS13CQ709C8 3753 aa15.29■□□□□ 0.04
SHOX2-203ENST00000441443 A4D1N5 150 aa15.29■□□□□ 0.04
SHOX2-203ENST00000441443 PMVKQ15126 192 aa15.29■□□□□ 0.04
SHOX2-203ENST00000441443 POLQO75417 2590 aa15.29■□□□□ 0.04
SHOX2-203ENST00000441443 EIF4EBP3O60516 100 aaPredicted RBP15.29■□□□□ 0.04
SHOX2-203ENST00000441443 RNASE4P34096 147 aaKnown RBP15.29■□□□□ 0.04
SHOX2-203ENST00000441443 IGIPA6NJ69 53 aa15.28■□□□□ 0.04
SHOX2-203ENST00000441443 USP9XQ93008 2570 aaPredicted RBP15.28■□□□□ 0.04
SHOX2-203ENST00000441443 TRAV21A0A0B4J279 112 aa15.28■□□□□ 0.04
SHOX2-203ENST00000441443 C11orf71Q6IPW1 123 aa15.28■□□□□ 0.04
SHOX2-203ENST00000441443 JPT2Q9H910 190 aa15.28■□□□□ 0.04
SHOX2-203ENST00000441443 UTP20O75691 2785 aaKnown RBP15.28■□□□□ 0.04
SHOX2-203ENST00000441443 M0R1W7 72 aa15.27■□□□□ 0.04
SHOX2-203ENST00000441443 GAGE2BQ13066 116 aa15.27■□□□□ 0.04
SHOX2-203ENST00000441443 GAGE2EQ4V326 116 aa15.27■□□□□ 0.04
SHOX2-203ENST00000441443 GAGE2DQ9UEU5 116 aa15.27■□□□□ 0.04
SHOX2-203ENST00000441443 F6UB75 175 aa15.27■□□□□ 0.04
SHOX2-203ENST00000441443 NTN5Q8WTR8 489 aaPredicted RBP15.27■□□□□ 0.04
SHOX2-203ENST00000441443 IGHV3-64A0A075B6Q5 118 aa15.27■□□□□ 0.03
SHOX2-203ENST00000441443 J3QQQ9 107 aa15.27■□□□□ 0.03
SHOX2-203ENST00000441443 ELANEP08246 267 aa15.27■□□□□ 0.03
SHOX2-203ENST00000441443 AMELXQ99217 191 aa15.27■□□□□ 0.03
SHOX2-203ENST00000441443 ZFHX3Q15911 3703 aa15.27■□□□□ 0.03
SHOX2-203ENST00000441443 IGHV3OR16-10A0A075B7F0 116 aa15.26■□□□□ 0.03
SHOX2-203ENST00000441443 SNCGO76070 127 aa15.26■□□□□ 0.03
SHOX2-203ENST00000441443 IGKV3-7A0A075B6H7 116 aa15.26■□□□□ 0.03
SHOX2-203ENST00000441443 EBI3Q14213 229 aa15.26■□□□□ 0.03
SHOX2-203ENST00000441443 PAPPA-AS1Q5QFB9 102 aa15.26■□□□□ 0.03
SHOX2-203ENST00000441443 TRAV2A0A0B4J234 112 aa15.25■□□□□ 0.03
SHOX2-203ENST00000441443 RHODO00212 210 aa15.25■□□□□ 0.03
SHOX2-203ENST00000441443 RNASE3P12724 160 aaKnown RBP15.25■□□□□ 0.03
SHOX2-203ENST00000441443 LGALS3P17931 250 aaKnown RBP15.25■□□□□ 0.03
SHOX2-203ENST00000441443 SRD5A1P18405 259 aa15.25■□□□□ 0.03
SHOX2-203ENST00000441443 MUC4Q99102 2169 aa15.25■□□□□ 0.03
SHOX2-203ENST00000441443 EEF1AKMT3Q96AZ1 226 aa15.25■□□□□ 0.03
SHOX2-203ENST00000441443 BEX4Q9NWD9 120 aaPredicted RBP15.25■□□□□ 0.03
SHOX2-203ENST00000441443 IGHV3-33P01772 117 aa15.25■□□□□ 0.03
SHOX2-203ENST00000441443 NDUFV3P56181 108 aaKnown RBP15.25■□□□□ 0.03
SHOX2-203ENST00000441443 OR10J6PQ8NGY7 276 aa15.25■□□□□ 0.03
SHOX2-203ENST00000441443 OPRPNQ99935 248 aaPredicted RBP15.25■□□□□ 0.03
SHOX2-203ENST00000441443 CCDC179H3BU77 68 aa15.24■□□□□ 0.03
SHOX2-203ENST00000441443 IGHV4-39P01824 125 aa15.24■□□□□ 0.03
SHOX2-203ENST00000441443 ITLN2Q8WWU7 325 aaPredicted RBP15.24■□□□□ 0.03
SHOX2-203ENST00000441443 LINC00527Q9UJ94 153 aa15.24■□□□□ 0.03
SHOX2-203ENST00000441443 A0A087WWL8 130 aa15.24■□□□□ 0.03
SHOX2-203ENST00000441443 Q1RN00 199 aa15.24■□□□□ 0.03
SHOX2-203ENST00000441443 Q8N1Y9 231 aa15.24■□□□□ 0.03
SHOX2-203ENST00000441443 LINC00477Q96M19 166 aa15.23■□□□□ 0.03
SHOX2-203ENST00000441443 U3KQE9 123 aa15.23■□□□□ 0.03
SHOX2-203ENST00000441443 CELSR2Q9HCU4 2923 aa15.23■□□□□ 0.03
SHOX2-203ENST00000441443 F5H697 171 aa15.23■□□□□ 0.03
SHOX2-203ENST00000441443 BPESC1Q9GZL8 116 aa15.23■□□□□ 0.03
SHOX2-203ENST00000441443 IGHV1-69DA0A0B4J2H0 117 aa15.22■□□□□ 0.03
SHOX2-203ENST00000441443 TEX49A0A1B0GTD5 131 aa15.22■□□□□ 0.03
SHOX2-203ENST00000441443 C9orf139Q6ZV77 190 aa15.22■□□□□ 0.03
SHOX2-203ENST00000441443 C19orf84I3L1E1 186 aa15.22■□□□□ 0.03
SHOX2-203ENST00000441443 GNLYP22749 145 aa15.22■□□□□ 0.03
SHOX2-203ENST00000441443 RPL11P62913 178 aaKnown RBP15.22■□□□□ 0.03
SHOX2-203ENST00000441443 TMEM263Q8WUH6 116 aaKnown RBP15.22■□□□□ 0.03
SHOX2-203ENST00000441443 LENEPQ9Y5L5 61 aa15.22■□□□□ 0.03
SHOX2-203ENST00000441443 LRRK2Q5S007 2527 aa15.22■□□□□ 0.03
SHOX2-203ENST00000441443 LINC00315P59091 139 aa15.22■□□□□ 0.03
SHOX2-203ENST00000441443 MUSTN1Q8IVN3 82 aa15.22■□□□□ 0.03
SHOX2-203ENST00000441443 PPP1R17O96001 155 aa15.21■□□□□ 0.03
SHOX2-203ENST00000441443 TTC32Q5I0X7 151 aa15.21■□□□□ 0.03
SHOX2-203ENST00000441443 C1orf122Q6ZSJ8 110 aa15.21■□□□□ 0.03
SHOX2-203ENST00000441443 SUMO4Q6EEV6 95 aa15.21■□□□□ 0.02
SHOX2-203ENST00000441443 POLR2KP53803 58 aaKnown RBP15.2■□□□□ 0.02
SHOX2-203ENST00000441443 ZNF876PQ49A33 203 aa15.2■□□□□ 0.02
SHOX2-203ENST00000441443 UNQ9165/PRO28630Q6UXU0 137 aa15.2■□□□□ 0.02
SHOX2-203ENST00000441443 ZNF256Q9Y2P7 627 aaPredicted RBP15.2■□□□□ 0.02
SHOX2-203ENST00000441443 IGSF10Q6WRI0 2623 aa15.2■□□□□ 0.02
SHOX2-203ENST00000441443 SDHAF1A6NFY7 115 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 KIF25-AS1Q9Y6Z4 181 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 DOPEY2Q9Y3R5 2298 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 TMEM141Q96I45 108 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 TRBV7-1A0A0A6YYK4 115 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 GAGE12JA6NER3 117 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 GAGE7O76087 117 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 GAGE12FP0CL80 117 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 GAGE12GP0CL81 117 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 GAGE12IP0CL82 117 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 GAGE4Q13068 117 aa15.19■□□□□ 0.02
SHOX2-203ENST00000441443 OOSP1A8MZH6 123 aa15.18■□□□□ 0.02
SHOX2-203ENST00000441443 IFITM1P13164 125 aa15.18■□□□□ 0.02
SHOX2-203ENST00000441443 MINOS1Q5TGZ0 78 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms