RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 CRYGDP07320 174 aa8.8□□□□□ -1
CD44-209ENST00000433892 RPL39P62891 51 aaKnown RBP8.8□□□□□ -1
CD44-209ENST00000433892 FAM74A4Q5TZK3 123 aa8.8□□□□□ -1
CD44-209ENST00000433892 G3V4G9 280 aa8.8□□□□□ -1
CD44-209ENST00000433892 LGALS1P09382 135 aaKnown RBP8.8□□□□□ -1
CD44-209ENST00000433892 POLR2KP53803 58 aaKnown RBP8.8□□□□□ -1
CD44-209ENST00000433892 ZFP2Q6ZN57 461 aa8.8□□□□□ -1
CD44-209ENST00000433892 MDFICQ9P1T7 246 aa8.8□□□□□ -1
CD44-209ENST00000433892 RIPPLY3P57055 190 aa8.79□□□□□ -1
CD44-209ENST00000433892 CD300EQ496F6 205 aaPredicted RBP8.79□□□□□ -1
CD44-209ENST00000433892 ZNF479Q96JC4 524 aa8.79□□□□□ -1
CD44-209ENST00000433892 SDHAF1A6NFY7 115 aa8.79□□□□□ -1
CD44-209ENST00000433892 ZNF815PA8K554 130 aa8.79□□□□□ -1
CD44-209ENST00000433892 SCGB2A2Q13296 93 aa8.79□□□□□ -1
CD44-209ENST00000433892 SAMD13Q5VXD3 122 aa8.79□□□□□ -1
CD44-209ENST00000433892 MAPK1IP1LQ8NDC0 245 aa8.79□□□□□ -1
CD44-209ENST00000433892 KIR2DL4Q99706 377 aa8.79□□□□□ -1
CD44-209ENST00000433892 ZFYVE26Q68DK2 2539 aa8.79□□□□□ -1
CD44-209ENST00000433892 FAM208BQ5VWN6 2430 aa8.78□□□□□ -1
CD44-209ENST00000433892 A0A0J9YX75 114 aa8.78□□□□□ -1
CD44-209ENST00000433892 IGIPA6NJ69 53 aa8.78□□□□□ -1
CD44-209ENST00000433892 C11orf86A6NJI1 115 aa8.78□□□□□ -1
CD44-209ENST00000433892 VCYO14598 125 aa8.78□□□□□ -1
CD44-209ENST00000433892 SYNJ2BPP57105 145 aa8.78□□□□□ -1
CD44-209ENST00000433892 SNRPD3P62318 126 aaKnown RBP8.78□□□□□ -1
CD44-209ENST00000433892 FOXI2Q6ZQN5 318 aa8.78□□□□□ -1
CD44-209ENST00000433892 KLHL30-AS1Q8NEE0 82 aa8.78□□□□□ -1
CD44-209ENST00000433892 DUX5Q96PT3 197 aa8.78□□□□□ -1
CD44-209ENST00000433892 LRRK2Q5S007 2527 aa8.78□□□□□ -1
CD44-209ENST00000433892 IGLV4-69A0A075B6H9 119 aa8.78□□□□□ -1
CD44-209ENST00000433892 IGHV3-16A0A0C4DH30 117 aa8.78□□□□□ -1
CD44-209ENST00000433892 GATA3P23771 443 aa8.78□□□□□ -1
CD44-209ENST00000433892 RPL32P62910 135 aaKnown RBP8.78□□□□□ -1
CD44-209ENST00000433892 RPL24P83731 157 aaKnown RBP8.78□□□□□ -1
CD44-209ENST00000433892 COTL1Q14019 142 aa8.78□□□□□ -1
CD44-209ENST00000433892 SPINK13Q1W4C9 94 aa8.78□□□□□ -1
CD44-209ENST00000433892 SCGB1D4Q6XE38 83 aa8.78□□□□□ -1
CD44-209ENST00000433892 Q8N1Y9 231 aa8.78□□□□□ -1
CD44-209ENST00000433892 ZNF580Q9UK33 172 aa8.78□□□□□ -1
CD44-209ENST00000433892 PLEKHB2Q96CS7 222 aa8.77□□□□□ -1.01
CD44-209ENST00000433892 ZNF256Q9Y2P7 627 aaPredicted RBP8.77□□□□□ -1.01
CD44-209ENST00000433892 LINC01619G3V211 115 aa8.77□□□□□ -1.01
CD44-209ENST00000433892 H3BMG7 143 aa8.77□□□□□ -1.01
CD44-209ENST00000433892 COX6B1P14854 86 aa8.77□□□□□ -1.01
CD44-209ENST00000433892 PMVKQ15126 192 aa8.77□□□□□ -1.01
CD44-209ENST00000433892 ZNF56Q15929 161 aa8.77□□□□□ -1.01
CD44-209ENST00000433892 AMTNQ6UX39 209 aa8.77□□□□□ -1.01
CD44-209ENST00000433892 C9orf85Q96MD7 179 aa8.77□□□□□ -1.01
CD44-209ENST00000433892 TEX15Q9BXT5 2789 aa8.76□□□□□ -1.01
CD44-209ENST00000433892 CUBNO60494 3623 aa8.76□□□□□ -1.01
CD44-209ENST00000433892 TEX48A0A1B0GUV7 120 aa8.76□□□□□ -1.01
CD44-209ENST00000433892 K7EQG2 157 aa8.76□□□□□ -1.01
CD44-209ENST00000433892 LGALS9O00182 355 aa8.76□□□□□ -1.01
CD44-209ENST00000433892 TGFAP01135 160 aa8.76□□□□□ -1.01
CD44-209ENST00000433892 RRN3P1Q2M238 152 aa8.76□□□□□ -1.01
CD44-209ENST00000433892 LINC01356Q8N9X3 169 aa8.76□□□□□ -1.01
CD44-209ENST00000433892 TRBV27A0A0K0K1C4 114 aa8.75□□□□□ -1.01
CD44-209ENST00000433892 A0A1B0GWB2 263 aa8.75□□□□□ -1.01
CD44-209ENST00000433892 ODF3Q96PU9 254 aa8.75□□□□□ -1.01
CD44-209ENST00000433892 IGHV1OR15-1A0A075B7D0 117 aa8.75□□□□□ -1.01
CD44-209ENST00000433892 M0QY20 66 aa8.75□□□□□ -1.01
CD44-209ENST00000433892 DSCR9P59020 149 aa8.75□□□□□ -1.01
CD44-209ENST00000433892 SRSF9Q13242 221 aaKnown RBP eCLIP8.75□□□□□ -1.01
CD44-209ENST00000433892 WFDC2Q14508 124 aa8.75□□□□□ -1.01
CD44-209ENST00000433892 MORN3Q6PF18 240 aaPredicted RBP8.75□□□□□ -1.01
CD44-209ENST00000433892 SYT8Q8NBV8 401 aa8.75□□□□□ -1.01
CD44-209ENST00000433892 TMEM141Q96I45 108 aa8.75□□□□□ -1.01
CD44-209ENST00000433892 MYO9AB2RTY4 2548 aa8.75□□□□□ -1.01
CD44-209ENST00000433892 HOXA3O43365 443 aaPredicted RBP8.74□□□□□ -1.01
CD44-209ENST00000433892 TIMM17AQ99595 171 aa8.74□□□□□ -1.01
CD44-209ENST00000433892 ABCA12Q86UK0 2595 aa8.74□□□□□ -1.01
CD44-209ENST00000433892 TRBV6-5A0A0K0K1A5 114 aa8.74□□□□□ -1.01
CD44-209ENST00000433892 TMEM170BQ5T4T1 132 aa8.74□□□□□ -1.01
CD44-209ENST00000433892 MTURNQ8N3F0 131 aa8.74□□□□□ -1.01
CD44-209ENST00000433892 ZNRF2Q8NHG8 242 aa8.74□□□□□ -1.01
CD44-209ENST00000433892 OPRPNQ99935 248 aaPredicted RBP8.74□□□□□ -1.01
CD44-209ENST00000433892 ZNF462Q96JM2 2506 aa8.74□□□□□ -1.01
CD44-209ENST00000433892 PTPN13Q12923 2485 aa8.73□□□□□ -1.01
CD44-209ENST00000433892 TMEM89A2RUT3 159 aa8.73□□□□□ -1.01
CD44-209ENST00000433892 LINC01549A6NIU2 74 aa8.73□□□□□ -1.01
CD44-209ENST00000433892 HOXD3P31249 432 aaPredicted RBP8.73□□□□□ -1.01
CD44-209ENST00000433892 HERVK_113P61574 105 aa8.73□□□□□ -1.01
CD44-209ENST00000433892 ZNF876PQ49A33 203 aa8.73□□□□□ -1.01
CD44-209ENST00000433892 PAPPA-AS1Q5QFB9 102 aa8.73□□□□□ -1.01
CD44-209ENST00000433892 A0A096LNT2 108 aa8.73□□□□□ -1.01
CD44-209ENST00000433892 F8W1H4 67 aa8.73□□□□□ -1.01
CD44-209ENST00000433892 TSPEAR-AS2P59090 65 aa8.73□□□□□ -1.01
CD44-209ENST00000433892 PGPEP1Q9NXJ5 209 aa8.73□□□□□ -1.01
CD44-209ENST00000433892 HTN1P15515 57 aa8.72□□□□□ -1.01
CD44-209ENST00000433892 MRPL16Q9NX20 251 aaKnown RBP8.72□□□□□ -1.01
CD44-209ENST00000433892 VPREB3Q9UKI3 123 aa8.72□□□□□ -1.01
CD44-209ENST00000433892 ZNF469Q96JG9 3925 aaPredicted RBP8.71□□□□□ -1.02
CD44-209ENST00000433892 A0A0J9YY99 117 aa8.71□□□□□ -1.02
CD44-209ENST00000433892 TMEM238LA0A1B0GVL6 79 aa8.71□□□□□ -1.02
CD44-209ENST00000433892 A6NJY4 79 aa8.71□□□□□ -1.02
CD44-209ENST00000433892 P0DMU3 169 aa8.71□□□□□ -1.02
CD44-209ENST00000433892 FAM231AP0DMU4 169 aa8.71□□□□□ -1.02
CD44-209ENST00000433892 FAM231CP0DMU5 169 aa8.71□□□□□ -1.02
CD44-209ENST00000433892 SFTA2Q6UW10 78 aa8.71□□□□□ -1.02
CD44-209ENST00000433892 SH2D6Q7Z4S9 175 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 132.3 ms