RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 DPH3P1Q9H4G8 78 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 A0A0J9YY99 117 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 PRSS2P07478 247 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 CD7P09564 240 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 ASIPP42127 132 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 UBE2D1P51668 147 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 HERVK_113P61574 105 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 C3orf56Q8N813 242 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 RNF152Q8N8N0 203 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 NTN5Q8WTR8 489 aaPredicted RBP7.47□□□□□ -1.21
PTCHD4-202ENST00000398738 TIMD4Q96H15 378 aa7.47□□□□□ -1.21
PTCHD4-202ENST00000398738 A4D1N5 150 aa7.47□□□□□ -1.21
PTCHD4-202ENST00000398738 SLC25A20O43772 301 aa7.47□□□□□ -1.21
PTCHD4-202ENST00000398738 MALP21145 153 aa7.47□□□□□ -1.21
PTCHD4-202ENST00000398738 IGF2RP11717 2491 aa7.47□□□□□ -1.21
PTCHD4-202ENST00000398738 CSPG4Q6UVK1 2322 aa7.46□□□□□ -1.21
PTCHD4-202ENST00000398738 CRYGDP07320 174 aa7.46□□□□□ -1.21
PTCHD4-202ENST00000398738 LGALS3P17931 250 aaKnown RBP7.46□□□□□ -1.21
PTCHD4-202ENST00000398738 IGFL3Q6UXB1 125 aa7.46□□□□□ -1.21
PTCHD4-202ENST00000398738 Q8N9W7 124 aa7.46□□□□□ -1.21
PTCHD4-202ENST00000398738 PRO1854Q9UHT4 67 aa7.46□□□□□ -1.21
PTCHD4-202ENST00000398738 ERG28Q9UKR5 140 aa7.46□□□□□ -1.21
PTCHD4-202ENST00000398738 CRLF1O75462 422 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 LYRM7Q5U5X0 104 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 OR10J6PQ8NGY7 276 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 AJUBAQ96IF1 538 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 TRAV4A0A0B4J268 109 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 TRBV12-3P01733 135 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 UBE2D3P61077 147 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 UBE2D2P62837 147 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 GAGE2BQ13066 116 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 GAGE2EQ4V326 116 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 C10orf126Q8N4M7 172 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 GAGE2DQ9UEU5 116 aa7.46□□□□□ -1.22
PTCHD4-202ENST00000398738 SNCGO76070 127 aa7.45□□□□□ -1.22
PTCHD4-202ENST00000398738 TSHBP01222 138 aa7.45□□□□□ -1.22
PTCHD4-202ENST00000398738 UNQ9165/PRO28630Q6UXU0 137 aa7.45□□□□□ -1.22
PTCHD4-202ENST00000398738 ZNF580Q9UK33 172 aa7.45□□□□□ -1.22
PTCHD4-202ENST00000398738 ELANEP08246 267 aa7.45□□□□□ -1.22
PTCHD4-202ENST00000398738 COX6B1P14854 86 aa7.45□□□□□ -1.22
PTCHD4-202ENST00000398738 ZFP36P26651 326 aaKnown RBP7.45□□□□□ -1.22
PTCHD4-202ENST00000398738 TTC32Q5I0X7 151 aa7.45□□□□□ -1.22
PTCHD4-202ENST00000398738 UBTD1Q9HAC8 227 aa7.45□□□□□ -1.22
PTCHD4-202ENST00000398738 TRAV21A0A0B4J279 112 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 TEX49A0A1B0GTD5 131 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 HTN1P15515 57 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 ATP6V0E2Q8NHE4 81 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 ZNRF2Q8NHG8 242 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 TMEM190Q8WZ59 177 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 LINC00477Q96M19 166 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 PTPRQQ9UMZ3 2332 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 RBAKDNA6NC62 111 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 J3QQQ9 107 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 IGHV3-30P01768 117 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 IGHV3-30-5P0DP03 117 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 EEF1AKMT3Q96AZ1 226 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 IGLV4-69A0A075B6H9 119 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 GAGE5Q13069 117 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 GAGE6Q13070 117 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 RNASE13Q5GAN3 156 aaKnown RBP7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 C9orf47Q6ZRZ4 202 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 ZFAND2AQ8N6M9 145 aa7.44□□□□□ -1.22
PTCHD4-202ENST00000398738 NACAE9PAV3 2078 aa7.43□□□□□ -1.22
PTCHD4-202ENST00000398738 CCDC179H3BU77 68 aa7.43□□□□□ -1.22
PTCHD4-202ENST00000398738 PMVKQ15126 192 aa7.43□□□□□ -1.22
PTCHD4-202ENST00000398738 MUSTN1Q8IVN3 82 aa7.43□□□□□ -1.22
PTCHD4-202ENST00000398738 LY6G5BQ8NDX9 201 aa7.43□□□□□ -1.22
PTCHD4-202ENST00000398738 TRAV12-3A0A0B4J271 114 aa7.43□□□□□ -1.22
PTCHD4-202ENST00000398738 SDHAF1A6NFY7 115 aa7.43□□□□□ -1.22
PTCHD4-202ENST00000398738 FAM110DQ8TAY7 271 aaPredicted RBP7.43□□□□□ -1.22
PTCHD4-202ENST00000398738 ODF3BA8MYP8 253 aa7.42□□□□□ -1.22
PTCHD4-202ENST00000398738 CCL21O00585 134 aa7.42□□□□□ -1.22
PTCHD4-202ENST00000398738 SAA4P35542 130 aa7.42□□□□□ -1.22
PTCHD4-202ENST00000398738 Q6ZSV7 163 aa7.42□□□□□ -1.22
PTCHD4-202ENST00000398738 GPHB5Q86YW7 130 aa7.42□□□□□ -1.22
PTCHD4-202ENST00000398738 Q8NA96 180 aa7.42□□□□□ -1.22
PTCHD4-202ENST00000398738 SPXQ9BT56 116 aa7.42□□□□□ -1.22
PTCHD4-202ENST00000398738 ZNF56Q15929 161 aa7.42□□□□□ -1.22
PTCHD4-202ENST00000398738 HRNRQ86YZ3 2850 aaPredicted RBP7.42□□□□□ -1.22
PTCHD4-202ENST00000398738 SMIM20Q8N5G0 67 aa7.42□□□□□ -1.22
PTCHD4-202ENST00000398738 TRAV12-2A0A075B6T6 113 aa7.41□□□□□ -1.22
PTCHD4-202ENST00000398738 RNASE3P12724 160 aaKnown RBP7.41□□□□□ -1.22
PTCHD4-202ENST00000398738 CDSNQ15517 529 aa7.41□□□□□ -1.22
PTCHD4-202ENST00000398738 LY6EQ16553 131 aa7.41□□□□□ -1.22
PTCHD4-202ENST00000398738 SUMO4Q6EEV6 95 aa7.41□□□□□ -1.22
PTCHD4-202ENST00000398738 FAM159AQ6UWV7 190 aa7.41□□□□□ -1.22
PTCHD4-202ENST00000398738 SLC25A29Q8N8R3 303 aa7.41□□□□□ -1.22
PTCHD4-202ENST00000398738 IGHV4-4A0A075B6R2 117 aa7.41□□□□□ -1.22
PTCHD4-202ENST00000398738 IGHV3-73A0A0B4J1V6 119 aa7.41□□□□□ -1.22
PTCHD4-202ENST00000398738 TMEM262E9PQX1 116 aa7.41□□□□□ -1.22
PTCHD4-202ENST00000398738 A0A0J9YXV3 536 aa7.4□□□□□ -1.22
PTCHD4-202ENST00000398738 LINC01619G3V211 115 aa7.4□□□□□ -1.22
PTCHD4-202ENST00000398738 EDN2P20800 178 aa7.4□□□□□ -1.22
PTCHD4-202ENST00000398738 MUC4Q99102 2169 aa7.4□□□□□ -1.22
PTCHD4-202ENST00000398738 NHLRC4P0CG21 123 aaPredicted RBP7.4□□□□□ -1.22
PTCHD4-202ENST00000398738 Q8N6K4 173 aa7.4□□□□□ -1.22
PTCHD4-202ENST00000398738 C15orf53Q8NAA6 179 aa7.4□□□□□ -1.22
PTCHD4-202ENST00000398738 A0A0U1RRA0 63 aa7.4□□□□□ -1.23
PTCHD4-202ENST00000398738 IGIPA6NJ69 53 aa7.4□□□□□ -1.23
PTCHD4-202ENST00000398738 A8MZ25 164 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms