RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 C18orf32Q8TCD1 76 aa13.37□□□□□ -0.27
CLN3-206ENST00000360019 TRAV26-2A0A0B4J265 109 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 C5orf52A6NGY3 159 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 CRYGDP07320 174 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 CKS2P33552 79 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 ORMDL3Q8N138 153 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 RASL10AQ92737 203 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 DNAH9Q9NYC9 4486 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 Q0VG73 95 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 DAZ2Q13117 558 aaKnown RBP13.36□□□□□ -0.27
CLN3-206ENST00000360019 IQCJQ1A5X6 159 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 OR10J3Q5JRS4 329 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 COA6Q5JTJ3 125 aaKnown RBP13.36□□□□□ -0.27
CLN3-206ENST00000360019 Q6ZWC4 215 aa13.36□□□□□ -0.27
CLN3-206ENST00000360019 NOP10Q9NPE3 64 aaKnown RBP13.36□□□□□ -0.27
CLN3-206ENST00000360019 MGPP08493 103 aa13.35□□□□□ -0.27
CLN3-206ENST00000360019 SMIM17P0DL12 118 aa13.35□□□□□ -0.27
CLN3-206ENST00000360019 KRTAP21-3Q3LHN1 58 aa13.35□□□□□ -0.27
CLN3-206ENST00000360019 FAM74A4Q5TZK3 123 aa13.35□□□□□ -0.27
CLN3-206ENST00000360019 RNF183Q96D59 192 aa13.35□□□□□ -0.27
CLN3-206ENST00000360019 PRELID3AQ96N28 172 aa13.35□□□□□ -0.27
CLN3-206ENST00000360019 SMIM9A6NGZ8 99 aa13.34□□□□□ -0.27
CLN3-206ENST00000360019 GATA1P15976 413 aaPredicted RBP13.34□□□□□ -0.27
CLN3-206ENST00000360019 Q6ZTI0 123 aa13.34□□□□□ -0.27
CLN3-206ENST00000360019 POM121L12Q8N7R1 296 aa13.34□□□□□ -0.27
CLN3-206ENST00000360019 OR11H2Q8NH07 326 aa13.34□□□□□ -0.27
CLN3-206ENST00000360019 TRGV1A0A0A0MS02 117 aa13.34□□□□□ -0.27
CLN3-206ENST00000360019 PPBPP02775 128 aa13.34□□□□□ -0.27
CLN3-206ENST00000360019 A8MWV9 139 aa13.33□□□□□ -0.28
CLN3-206ENST00000360019 NPYP01303 97 aa13.33□□□□□ -0.28
CLN3-206ENST00000360019 LINC00310P59036 64 aa13.33□□□□□ -0.28
CLN3-206ENST00000360019 MRAP2Q96G30 205 aa13.33□□□□□ -0.28
CLN3-206ENST00000360019 OVOL2Q9BRP0 275 aa13.33□□□□□ -0.28
CLN3-206ENST00000360019 NACAE9PAV3 2078 aa13.32□□□□□ -0.28
CLN3-206ENST00000360019 K7EIL1 84 aa13.32□□□□□ -0.28
CLN3-206ENST00000360019 EMP1P54849 157 aa13.32□□□□□ -0.28
CLN3-206ENST00000360019 LGALS9BQ3B8N2 356 aa13.32□□□□□ -0.28
CLN3-206ENST00000360019 CFAP126Q5VTH2 177 aa13.32□□□□□ -0.28
CLN3-206ENST00000360019 UFSP1Q6NVU6 142 aa13.32□□□□□ -0.28
CLN3-206ENST00000360019 NDUFAF3Q9BU61 184 aa13.32□□□□□ -0.28
CLN3-206ENST00000360019 HOXA5P20719 270 aa13.32□□□□□ -0.28
CLN3-206ENST00000360019 BAGE3Q86Y29 109 aa13.32□□□□□ -0.28
CLN3-206ENST00000360019 NRACQ8N912 160 aa13.32□□□□□ -0.28
CLN3-206ENST00000360019 NUPR1O60356 82 aa13.31□□□□□ -0.28
CLN3-206ENST00000360019 SUMO4Q6EEV6 95 aa13.31□□□□□ -0.28
CLN3-206ENST00000360019 RS1O15537 224 aa13.3□□□□□ -0.28
CLN3-206ENST00000360019 SERF1AO75920 110 aa13.3□□□□□ -0.28
CLN3-206ENST00000360019 TNFRSF6BO95407 300 aa13.3□□□□□ -0.28
CLN3-206ENST00000360019 ZNF56Q15929 161 aa13.3□□□□□ -0.28
CLN3-206ENST00000360019 URB1-AS1Q96HZ7 61 aa13.3□□□□□ -0.28
CLN3-206ENST00000360019 IGHV3-73A0A0B4J1V6 119 aa13.29□□□□□ -0.28
CLN3-206ENST00000360019 IGHV4-28A0A0C4DH34 117 aa13.29□□□□□ -0.28
CLN3-206ENST00000360019 F5H697 171 aa13.29□□□□□ -0.28
CLN3-206ENST00000360019 PDZD11Q5EBL8 140 aa13.29□□□□□ -0.28
CLN3-206ENST00000360019 Q8NAQ8 132 aa13.29□□□□□ -0.28
CLN3-206ENST00000360019 LAMTOR2Q9Y2Q5 125 aa13.29□□□□□ -0.28
CLN3-206ENST00000360019 LOC105371267A0A1B0GV96 52 aa13.29□□□□□ -0.28
CLN3-206ENST00000360019 RETNQ9HD89 108 aa13.29□□□□□ -0.28
CLN3-206ENST00000360019 GAGE12BA1L429 117 aa13.28□□□□□ -0.28
CLN3-206ENST00000360019 GAGE7O76087 117 aa13.28□□□□□ -0.28
CLN3-206ENST00000360019 GAGE12FP0CL80 117 aa13.28□□□□□ -0.28
CLN3-206ENST00000360019 GAGE12GP0CL81 117 aa13.28□□□□□ -0.28
CLN3-206ENST00000360019 GAGE12IP0CL82 117 aa13.28□□□□□ -0.28
CLN3-206ENST00000360019 MIFP14174 115 aa13.28□□□□□ -0.28
CLN3-206ENST00000360019 HIST3H2BBQ8N257 126 aa13.28□□□□□ -0.28
CLN3-206ENST00000360019 RPL39LQ96EH5 51 aaKnown RBP13.28□□□□□ -0.28
CLN3-206ENST00000360019 DEFB4AO15263 64 aa13.27□□□□□ -0.28
CLN3-206ENST00000360019 TP53TG1Q9Y2A0 90 aa13.27□□□□□ -0.28
CLN3-206ENST00000360019 LOC389332A0A1B0GUA5 103 aa13.27□□□□□ -0.29
CLN3-206ENST00000360019 IFITM10A6NMD0 228 aa13.27□□□□□ -0.29
CLN3-206ENST00000360019 NIT1Q86X76 327 aa13.27□□□□□ -0.29
CLN3-206ENST00000360019 OR4C5Q8NGB2 326 aa13.27□□□□□ -0.29
CLN3-206ENST00000360019 ZNF479Q96JC4 524 aa13.27□□□□□ -0.29
CLN3-206ENST00000360019 M0QY20 66 aa13.26□□□□□ -0.29
CLN3-206ENST00000360019 RHODO00212 210 aa13.26□□□□□ -0.29
CLN3-206ENST00000360019 ESDP10768 282 aa13.26□□□□□ -0.29
CLN3-206ENST00000360019 Q6ZSN1 163 aa13.26□□□□□ -0.29
CLN3-206ENST00000360019 TENM3Q9P273 2699 aa13.26□□□□□ -0.29
CLN3-206ENST00000360019 TRAV4A0A0B4J268 109 aa13.25□□□□□ -0.29
CLN3-206ENST00000360019 IFI27P40305 119 aaPredicted RBP13.25□□□□□ -0.29
CLN3-206ENST00000360019 ZFP2Q6ZN57 461 aa13.25□□□□□ -0.29
CLN3-206ENST00000360019 SBSPONQ8IVN8 264 aa13.25□□□□□ -0.29
CLN3-206ENST00000360019 LINC00612Q8N6U2 182 aa13.25□□□□□ -0.29
CLN3-206ENST00000360019 MAP1LC3AQ9H492 121 aa13.25□□□□□ -0.29
CLN3-206ENST00000360019 TRGV2A0A075B6R0 118 aa13.25□□□□□ -0.29
CLN3-206ENST00000360019 IGHV3-53P01767 116 aa13.25□□□□□ -0.29
CLN3-206ENST00000360019 RNASEKQ6P5S7 137 aaKnown RBP13.25□□□□□ -0.29
CLN3-206ENST00000360019 FAM222AQ5U5X8 452 aa13.24□□□□□ -0.29
CLN3-206ENST00000360019 EDA2RQ9HAV5 297 aa13.24□□□□□ -0.29
CLN3-206ENST00000360019 PRKDCP78527 4128 aaKnown RBP13.24□□□□□ -0.29
CLN3-206ENST00000360019 PRSS47A8MTI9 375 aa13.23□□□□□ -0.29
CLN3-206ENST00000360019 LINC00614P0C842 121 aa13.23□□□□□ -0.29
CLN3-206ENST00000360019 DEFB121Q5J5C9 76 aa13.23□□□□□ -0.29
CLN3-206ENST00000360019 PRSS3P2Q8NHM4 247 aa13.23□□□□□ -0.29
CLN3-206ENST00000360019 DKK2Q9UBU2 259 aa13.23□□□□□ -0.29
CLN3-206ENST00000360019 LYRM9A8MSI8 78 aa13.23□□□□□ -0.29
CLN3-206ENST00000360019 DEFB130BP0DP73 79 aa13.23□□□□□ -0.29
CLN3-206ENST00000360019 DEFB130AP0DP74 79 aa13.23□□□□□ -0.29
CLN3-206ENST00000360019 SUMO2P61956 95 aaKnown RBP13.23□□□□□ -0.29
CLN3-206ENST00000360019 IGLV2-18A0A075B6J9 118 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms