RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 SYT8Q8NBV8 401 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 MDFICQ9P1T7 246 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 USP24Q9UPU5 2620 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 IGHV1OR15-1A0A075B7D0 117 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 VCYO14598 125 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 HOXA3O43365 443 aaPredicted RBP16.41■□□□□ 0.22
UPF3A-201ENST00000351487 ZFP2Q6ZN57 461 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 BBC3Q96PG8 261 aaPredicted RBP16.41■□□□□ 0.22
UPF3A-201ENST00000351487 FAM208BQ5VWN6 2430 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 A0A1W2PPM0 123 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 OR11H12B2RN74 326 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 LINC01619G3V211 115 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 SPINK13Q1W4C9 94 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 AMTNQ6UX39 209 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 OR11H1Q8NG94 326 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 OR11H2Q8NH07 326 aa16.41■□□□□ 0.22
UPF3A-201ENST00000351487 CSMD2Q7Z408 3487 aa16.4■□□□□ 0.22
UPF3A-201ENST00000351487 TRBV27A0A0K0K1C4 114 aa16.4■□□□□ 0.22
UPF3A-201ENST00000351487 KIR2DL4Q99706 377 aa16.4■□□□□ 0.22
UPF3A-201ENST00000351487 NAA38Q9BRA0 125 aaKnown RBP16.4■□□□□ 0.22
UPF3A-201ENST00000351487 ZNF462Q96JM2 2506 aa16.39■□□□□ 0.22
UPF3A-201ENST00000351487 IGIPA6NJ69 53 aa16.39■□□□□ 0.22
UPF3A-201ENST00000351487 F5H697 171 aa16.39■□□□□ 0.22
UPF3A-201ENST00000351487 PHLDA1Q8WV24 401 aaPredicted RBP16.39■□□□□ 0.22
UPF3A-201ENST00000351487 BEX4Q9NWD9 120 aaPredicted RBP16.39■□□□□ 0.22
UPF3A-201ENST00000351487 TP53TG1Q9Y2A0 90 aa16.39■□□□□ 0.22
UPF3A-201ENST00000351487 SDHAF1A6NFY7 115 aa16.39■□□□□ 0.21
UPF3A-201ENST00000351487 E9PLD3 99 aa16.39■□□□□ 0.21
UPF3A-201ENST00000351487 RIPPLY3P57055 190 aa16.39■□□□□ 0.21
UPF3A-201ENST00000351487 Q8N2B8 174 aa16.39■□□□□ 0.21
UPF3A-201ENST00000351487 DUX5Q96PT3 197 aa16.39■□□□□ 0.21
UPF3A-201ENST00000351487 ZANQ9Y493 2812 aa16.39■□□□□ 0.21
UPF3A-201ENST00000351487 POLQO75417 2590 aa16.39■□□□□ 0.21
UPF3A-201ENST00000351487 TSHBP01222 138 aa16.38■□□□□ 0.21
UPF3A-201ENST00000351487 MYMXA0A1B0GTQ4 84 aa16.38■□□□□ 0.21
UPF3A-201ENST00000351487 CRYGDP07320 174 aa16.38■□□□□ 0.21
UPF3A-201ENST00000351487 LRRC75A-AS1Q8N1F1 130 aa16.37■□□□□ 0.21
UPF3A-201ENST00000351487 KRTAP10-9P60411 292 aa16.37■□□□□ 0.21
UPF3A-201ENST00000351487 DEFB113Q30KQ7 82 aa16.37■□□□□ 0.21
UPF3A-201ENST00000351487 OCIAD2Q56VL3 154 aa16.37■□□□□ 0.21
UPF3A-201ENST00000351487 TCTEX1D4Q5JR98 221 aa16.37■□□□□ 0.21
UPF3A-201ENST00000351487 LRRK2Q5S007 2527 aa16.37■□□□□ 0.21
UPF3A-201ENST00000351487 FAM74A4Q5TZK3 123 aa16.37■□□□□ 0.21
UPF3A-201ENST00000351487 TMEM141Q96I45 108 aa16.37■□□□□ 0.21
UPF3A-201ENST00000351487 TIMM17AQ99595 171 aa16.37■□□□□ 0.21
UPF3A-201ENST00000351487 M0QY20 66 aa16.36■□□□□ 0.21
UPF3A-201ENST00000351487 UBR5O95071 2799 aaPredicted RBP16.36■□□□□ 0.21
UPF3A-201ENST00000351487 Q5PR19 223 aa16.35■□□□□ 0.21
UPF3A-201ENST00000351487 SAMD5Q5TGI4 173 aa16.35■□□□□ 0.21
UPF3A-201ENST00000351487 MORN3Q6PF18 240 aaPredicted RBP16.35■□□□□ 0.21
UPF3A-201ENST00000351487 ZNF843Q8N446 348 aa16.35■□□□□ 0.21
UPF3A-201ENST00000351487 OR5A1Q8NGJ0 315 aa16.35■□□□□ 0.21
UPF3A-201ENST00000351487 ZFYVE26Q68DK2 2539 aa16.35■□□□□ 0.21
UPF3A-201ENST00000351487 TRGV11A0A075B6L2 103 aa16.35■□□□□ 0.21
UPF3A-201ENST00000351487 TRBV7-3A0A075B6L6 115 aa16.35■□□□□ 0.21
UPF3A-201ENST00000351487 FABP2P12104 132 aa16.35■□□□□ 0.21
UPF3A-201ENST00000351487 PAPPA-AS1Q5QFB9 102 aa16.35■□□□□ 0.21
UPF3A-201ENST00000351487 NHP2Q9NX24 153 aaKnown RBP16.35■□□□□ 0.21
UPF3A-201ENST00000351487 SPCS1Q9Y6A9 102 aa16.35■□□□□ 0.21
UPF3A-201ENST00000351487 IGLV4-69A0A075B6H9 119 aa16.34■□□□□ 0.21
UPF3A-201ENST00000351487 K7ERJ3 54 aa16.34■□□□□ 0.21
UPF3A-201ENST00000351487 ZNF56Q15929 161 aa16.34■□□□□ 0.21
UPF3A-201ENST00000351487 PRADC1Q9BSG0 188 aa16.34■□□□□ 0.21
UPF3A-201ENST00000351487 ZNF256Q9Y2P7 627 aaPredicted RBP16.34■□□□□ 0.21
UPF3A-201ENST00000351487 PTPN13Q12923 2485 aa16.34■□□□□ 0.21
UPF3A-201ENST00000351487 A8MTW9 85 aa16.34■□□□□ 0.21
UPF3A-201ENST00000351487 PMVKQ15126 192 aa16.34■□□□□ 0.21
UPF3A-201ENST00000351487 SLURP1P55000 103 aa16.33■□□□□ 0.2
UPF3A-201ENST00000351487 RPL39P62891 51 aaKnown RBP16.33■□□□□ 0.2
UPF3A-201ENST00000351487 TRPT1Q86TN4 253 aaKnown RBP16.33■□□□□ 0.2
UPF3A-201ENST00000351487 HIST1H4GQ99525 98 aa16.33■□□□□ 0.2
UPF3A-201ENST00000351487 SORL1Q92673 2214 aa16.32■□□□□ 0.2
UPF3A-201ENST00000351487 NSUN5P1Q3KNT7 163 aa16.32■□□□□ 0.2
UPF3A-201ENST00000351487 TRAV2A0A0B4J234 112 aa16.31■□□□□ 0.2
UPF3A-201ENST00000351487 RHOHQ15669 191 aa16.31■□□□□ 0.2
UPF3A-201ENST00000351487 C18orf65Q6ZTR6 163 aa16.31■□□□□ 0.2
UPF3A-201ENST00000351487 CREBBPQ92793 2442 aa16.31■□□□□ 0.2
UPF3A-201ENST00000351487 C11orf86A6NJI1 115 aa16.31■□□□□ 0.2
UPF3A-201ENST00000351487 DEFB136Q30KP8 78 aa16.31■□□□□ 0.2
UPF3A-201ENST00000351487 ZNF876PQ49A33 203 aa16.31■□□□□ 0.2
UPF3A-201ENST00000351487 RBMY1A1P0DJD3 496 aaKnown RBP16.3■□□□□ 0.2
UPF3A-201ENST00000351487 RBMY1CP0DJD4 496 aa16.3■□□□□ 0.2
UPF3A-201ENST00000351487 RBMY1FQ15415 496 aaKnown RBP16.3■□□□□ 0.2
UPF3A-201ENST00000351487 MXRA5Q9NR99 2828 aa16.3■□□□□ 0.2
UPF3A-201ENST00000351487 C4orf3Q8WVX3 66 aa16.29■□□□□ 0.2
UPF3A-201ENST00000351487 C12orf74Q32Q52 190 aa16.29■□□□□ 0.2
UPF3A-201ENST00000351487 EDA2RQ9HAV5 297 aa16.29■□□□□ 0.2
UPF3A-201ENST00000351487 A0A1B0GWB2 263 aa16.28■□□□□ 0.2
UPF3A-201ENST00000351487 KNCNA6PVL3 124 aa16.28■□□□□ 0.2
UPF3A-201ENST00000351487 DEFB131AP59861 70 aa16.28■□□□□ 0.2
UPF3A-201ENST00000351487 DEFB104AQ8WTQ1 72 aa16.28■□□□□ 0.2
UPF3A-201ENST00000351487 Q96MF0 132 aa16.28■□□□□ 0.2
UPF3A-201ENST00000351487 PEMTQ9UBM1 199 aa16.28■□□□□ 0.2
UPF3A-201ENST00000351487 NAV2Q8IVL1 2488 aa16.28■□□□□ 0.2
UPF3A-201ENST00000351487 ZNF815PA8K554 130 aa16.27■□□□□ 0.2
UPF3A-201ENST00000351487 HERVK_113P61574 105 aa16.27■□□□□ 0.2
UPF3A-201ENST00000351487 H3BMM0 161 aa16.27■□□□□ 0.19
UPF3A-201ENST00000351487 K7ERU9 68 aa16.27■□□□□ 0.19
UPF3A-201ENST00000351487 KRTAP1-3Q8IUG1 177 aa16.26■□□□□ 0.19
UPF3A-201ENST00000351487 IGLL5B9A064 214 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms