RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 ZNF625Q96I27 306 aaPredicted RBP11.26□□□□□ -0.61
TCOF1-201ENST00000323668 LAMA2P24043 3122 aaKnown RBP11.26□□□□□ -0.61
TCOF1-201ENST00000323668 RPL39P62891 51 aaKnown RBP11.26□□□□□ -0.61
TCOF1-201ENST00000323668 ZFAND3Q9H8U3 227 aa11.26□□□□□ -0.61
TCOF1-201ENST00000323668 CHCHD5Q9BSY4 110 aa11.26□□□□□ -0.61
TCOF1-201ENST00000323668 TM2D2Q9BX73 214 aa11.26□□□□□ -0.61
TCOF1-201ENST00000323668 NACAE9PAV3 2078 aa11.26□□□□□ -0.61
TCOF1-201ENST00000323668 IGHV3-16A0A0C4DH30 117 aa11.25□□□□□ -0.61
TCOF1-201ENST00000323668 ADAMTS20P59510 1910 aa11.25□□□□□ -0.61
TCOF1-201ENST00000323668 C11orf86A6NJI1 115 aa11.25□□□□□ -0.61
TCOF1-201ENST00000323668 LGALS1P09382 135 aaKnown RBP11.25□□□□□ -0.61
TCOF1-201ENST00000323668 MYO9AB2RTY4 2548 aa11.25□□□□□ -0.61
TCOF1-201ENST00000323668 MAPK1IP1LQ8NDC0 245 aa11.25□□□□□ -0.61
TCOF1-201ENST00000323668 RBMY1BA6NDE4 496 aaKnown RBP11.25□□□□□ -0.61
TCOF1-201ENST00000323668 RBMY1EA6NEQ0 496 aaKnown RBP11.25□□□□□ -0.61
TCOF1-201ENST00000323668 TRBV12-3P01733 135 aa11.25□□□□□ -0.61
TCOF1-201ENST00000323668 ELANEP08246 267 aa11.25□□□□□ -0.61
TCOF1-201ENST00000323668 RBMY1DP0C7P1 496 aaKnown RBP11.25□□□□□ -0.61
TCOF1-201ENST00000323668 RBMY1A1P0DJD3 496 aaKnown RBP11.25□□□□□ -0.61
TCOF1-201ENST00000323668 RBMY1CP0DJD4 496 aa11.25□□□□□ -0.61
TCOF1-201ENST00000323668 LINC00158P58513 81 aa11.25□□□□□ -0.61
TCOF1-201ENST00000323668 XCL2Q9UBD3 114 aa11.25□□□□□ -0.61
TCOF1-201ENST00000323668 NCOR2Q9Y618 2525 aa11.24□□□□□ -0.61
TCOF1-201ENST00000323668 TNRC6BQ9UPQ9 1833 aaKnown RBP11.24□□□□□ -0.61
TCOF1-201ENST00000323668 TIMM17AQ99595 171 aa11.24□□□□□ -0.61
TCOF1-201ENST00000323668 IGHG2P01859 326 aa11.24□□□□□ -0.61
TCOF1-201ENST00000323668 LMO4P61968 165 aa11.24□□□□□ -0.61
TCOF1-201ENST00000323668 H3BMM0 161 aa11.24□□□□□ -0.61
TCOF1-201ENST00000323668 IGHV4-59P01825 116 aa11.24□□□□□ -0.61
TCOF1-201ENST00000323668 UBE2WQ96B02 151 aa11.24□□□□□ -0.61
TCOF1-201ENST00000323668 C1QTNF4Q9BXJ3 329 aa11.24□□□□□ -0.61
TCOF1-201ENST00000323668 IGHV3-38A0A0C4DH36 116 aa11.23□□□□□ -0.61
TCOF1-201ENST00000323668 A0A0J9YXV3 536 aa11.23□□□□□ -0.61
TCOF1-201ENST00000323668 LEPROTO15243 131 aa11.23□□□□□ -0.61
TCOF1-201ENST00000323668 K7EMT4 169 aa11.23□□□□□ -0.61
TCOF1-201ENST00000323668 MRPS12O15235 138 aaKnown RBP11.23□□□□□ -0.61
TCOF1-201ENST00000323668 PF4P02776 101 aa11.23□□□□□ -0.61
TCOF1-201ENST00000323668 RNASE13Q5GAN3 156 aaKnown RBP11.23□□□□□ -0.61
TCOF1-201ENST00000323668 A4D1N5 150 aa11.23□□□□□ -0.61
TCOF1-201ENST00000323668 DEFB112Q30KQ8 113 aa11.22□□□□□ -0.61
TCOF1-201ENST00000323668 RNF223E7ERA6 249 aa11.22□□□□□ -0.61
TCOF1-201ENST00000323668 CRPP02741 224 aa11.22□□□□□ -0.61
TCOF1-201ENST00000323668 CMC4P56277 68 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-201ENST00000323668 LINC01619G3V211 115 aa11.21□□□□□ -0.61
TCOF1-201ENST00000323668 JPT2Q9H910 190 aa11.21□□□□□ -0.61
TCOF1-201ENST00000323668 IGF1P05019 195 aa11.21□□□□□ -0.61
TCOF1-201ENST00000323668 Q71RC1 249 aaPredicted RBP11.21□□□□□ -0.61
TCOF1-201ENST00000323668 Q8N1Y9 231 aa11.21□□□□□ -0.61
TCOF1-201ENST00000323668 Q8N6K4 173 aa11.21□□□□□ -0.61
TCOF1-201ENST00000323668 MAPKAPK5-AS1Q8N8E1 139 aa11.21□□□□□ -0.61
TCOF1-201ENST00000323668 ZNRF2Q8NHG8 242 aa11.21□□□□□ -0.61
TCOF1-201ENST00000323668 NTN5Q8WTR8 489 aaPredicted RBP11.21□□□□□ -0.61
TCOF1-201ENST00000323668 HOXD3P31249 432 aaPredicted RBP11.21□□□□□ -0.61
TCOF1-201ENST00000323668 TEN1Q86WV5 123 aa11.21□□□□□ -0.61
TCOF1-201ENST00000323668 GAS8-AS1O95177 125 aa11.2□□□□□ -0.62
TCOF1-201ENST00000323668 LAMA3Q16787 3333 aa11.2□□□□□ -0.62
TCOF1-201ENST00000323668 IGHV4-30-2A0A087WSY4 118 aa11.2□□□□□ -0.62
TCOF1-201ENST00000323668 CNFNQ9BYD5 112 aa11.2□□□□□ -0.62
TCOF1-201ENST00000323668 J3QLI3 93 aa11.19□□□□□ -0.62
TCOF1-201ENST00000323668 GPHB5Q86YW7 130 aa11.19□□□□□ -0.62
TCOF1-201ENST00000323668 NEXN-AS1Q8NBZ9 246 aa11.19□□□□□ -0.62
TCOF1-201ENST00000323668 C10orf105Q8TEF2 133 aa11.19□□□□□ -0.62
TCOF1-201ENST00000323668 C11orf21Q9P2W6 132 aa11.19□□□□□ -0.62
TCOF1-201ENST00000323668 FOXI1Q12951 378 aa11.19□□□□□ -0.62
TCOF1-201ENST00000323668 ANKRD11Q6UB99 2663 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-201ENST00000323668 PAX4O43316 350 aa11.19□□□□□ -0.62
TCOF1-201ENST00000323668 MUSTN1Q8IVN3 82 aa11.19□□□□□ -0.62
TCOF1-201ENST00000323668 TMEM86BQ8N661 226 aa11.19□□□□□ -0.62
TCOF1-201ENST00000323668 ZFAND2AQ8N6M9 145 aa11.19□□□□□ -0.62
TCOF1-201ENST00000323668 CFAP161Q6P656 301 aa11.18□□□□□ -0.62
TCOF1-201ENST00000323668 PIFOQ8TCI5 191 aa11.18□□□□□ -0.62
TCOF1-201ENST00000323668 GAGE12JA6NER3 117 aa11.18□□□□□ -0.62
TCOF1-201ENST00000323668 GAGE4Q13068 117 aa11.18□□□□□ -0.62
TCOF1-201ENST00000323668 GAGE5Q13069 117 aa11.18□□□□□ -0.62
TCOF1-201ENST00000323668 MRGPRG-AS1Q2M3A8 158 aa11.18□□□□□ -0.62
TCOF1-201ENST00000323668 NRACQ8N912 160 aa11.18□□□□□ -0.62
TCOF1-201ENST00000323668 C20orf173Q96LM9 149 aa11.18□□□□□ -0.62
TCOF1-201ENST00000323668 C11orf71Q6IPW1 123 aa11.17□□□□□ -0.62
TCOF1-201ENST00000323668 SPAG8Q99932 426 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-201ENST00000323668 MDFICQ9P1T7 246 aa11.17□□□□□ -0.62
TCOF1-201ENST00000323668 SPANXA1Q9NS26 97 aa11.17□□□□□ -0.62
TCOF1-201ENST00000323668 VPREB3Q9UKI3 123 aa11.16□□□□□ -0.62
TCOF1-201ENST00000323668 NOTCH2Q04721 2471 aa11.16□□□□□ -0.62
TCOF1-201ENST00000323668 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-201ENST00000323668 IGKV2-29A2NJV5 120 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-201ENST00000323668 RPL35AP18077 110 aaKnown RBP11.16□□□□□ -0.62
TCOF1-201ENST00000323668 ANKRD29Q8N6D5 301 aa11.16□□□□□ -0.62
TCOF1-201ENST00000323668 PIEZO1Q92508 2521 aa11.16□□□□□ -0.62
TCOF1-201ENST00000323668 TRANK1O15050 2925 aa11.16□□□□□ -0.62
TCOF1-201ENST00000323668 A0A096LNJ9 63 aa11.16□□□□□ -0.62
TCOF1-201ENST00000323668 HERVK_113P63121 156 aa11.15□□□□□ -0.62
TCOF1-201ENST00000323668 C6orf226Q5I0X4 101 aa11.15□□□□□ -0.62
TCOF1-201ENST00000323668 NDUFA11Q86Y39 141 aa11.15□□□□□ -0.62
TCOF1-201ENST00000323668 C20orf203Q8NBC4 194 aa11.15□□□□□ -0.62
TCOF1-201ENST00000323668 CARD19Q96LW7 228 aa11.15□□□□□ -0.62
TCOF1-201ENST00000323668 A6NDX4 124 aa11.15□□□□□ -0.62
TCOF1-201ENST00000323668 NAV2Q8IVL1 2488 aa11.15□□□□□ -0.62
TCOF1-201ENST00000323668 A0A0J9YX75 114 aa11.15□□□□□ -0.62
TCOF1-201ENST00000323668 PRSS47A8MTI9 375 aa11.15□□□□□ -0.62
TCOF1-201ENST00000323668 HHLA3Q9XRX5 114 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms