RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 NACAE9PAV3 2078 aa8.51□□□□□ -1.05
CUX1-202ENST00000292538 MUC4Q99102 2169 aa8.51□□□□□ -1.05
CUX1-202ENST00000292538 IGHV1OR15-1A0A075B7D0 117 aa8.51□□□□□ -1.05
CUX1-202ENST00000292538 SUMO2P61956 95 aaKnown RBP8.51□□□□□ -1.05
CUX1-202ENST00000292538 ZNF876PQ49A33 203 aa8.51□□□□□ -1.05
CUX1-202ENST00000292538 FOXI2Q6ZQN5 318 aa8.51□□□□□ -1.05
CUX1-202ENST00000292538 Q6ZVH6 145 aa8.51□□□□□ -1.05
CUX1-202ENST00000292538 C2orf88Q9BSF0 95 aa8.51□□□□□ -1.05
CUX1-202ENST00000292538 TMEM160Q9NX00 188 aa8.51□□□□□ -1.05
CUX1-202ENST00000292538 ZNF256Q9Y2P7 627 aaPredicted RBP8.51□□□□□ -1.05
CUX1-202ENST00000292538 SLC25A34Q6PIV7 304 aa8.5□□□□□ -1.05
CUX1-202ENST00000292538 CSTL1Q9H114 145 aa8.5□□□□□ -1.05
CUX1-202ENST00000292538 XCL2Q9UBD3 114 aa8.5□□□□□ -1.05
CUX1-202ENST00000292538 DUSP14O95147 198 aaKnown RBP8.5□□□□□ -1.05
CUX1-202ENST00000292538 DEFB114Q30KQ6 69 aa8.5□□□□□ -1.05
CUX1-202ENST00000292538 ERASQ7Z444 233 aa8.5□□□□□ -1.05
CUX1-202ENST00000292538 TMEM208Q9BTX3 173 aa8.5□□□□□ -1.05
CUX1-202ENST00000292538 IGHV4-4A0A075B6R2 117 aa8.5□□□□□ -1.05
CUX1-202ENST00000292538 SAP30O75446 220 aa8.5□□□□□ -1.05
CUX1-202ENST00000292538 RBMY1A1P0DJD3 496 aaKnown RBP8.5□□□□□ -1.05
CUX1-202ENST00000292538 RBMY1CP0DJD4 496 aa8.5□□□□□ -1.05
CUX1-202ENST00000292538 RBMY1FQ15415 496 aaKnown RBP8.5□□□□□ -1.05
CUX1-202ENST00000292538 TEX29Q8N6K0 151 aa8.5□□□□□ -1.05
CUX1-202ENST00000292538 ZNF418Q8TF45 676 aaPredicted RBP8.5□□□□□ -1.05
CUX1-202ENST00000292538 MRAP2Q96G30 205 aa8.49□□□□□ -1.05
CUX1-202ENST00000292538 LINC01587Q99440 93 aa8.49□□□□□ -1.05
CUX1-202ENST00000292538 SMIM2Q9BVW6 85 aa8.49□□□□□ -1.05
CUX1-202ENST00000292538 ST20Q9HBF5 79 aa8.49□□□□□ -1.05
CUX1-202ENST00000292538 IGHV3-16A0A0C4DH30 117 aa8.49□□□□□ -1.05
CUX1-202ENST00000292538 TMEM86BQ8N661 226 aa8.49□□□□□ -1.05
CUX1-202ENST00000292538 TTTY13Q9BZ97 58 aa8.49□□□□□ -1.05
CUX1-202ENST00000292538 H3BMM0 161 aa8.48□□□□□ -1.05
CUX1-202ENST00000292538 MPV17L2Q567V2 206 aa8.48□□□□□ -1.05
CUX1-202ENST00000292538 MAP6D1Q9H9H5 199 aa8.48□□□□□ -1.05
CUX1-202ENST00000292538 SCRT2Q9NQ03 307 aa8.48□□□□□ -1.05
CUX1-202ENST00000292538 IGLV2-18A0A075B6J9 118 aa8.48□□□□□ -1.05
CUX1-202ENST00000292538 NUTF2P61970 127 aaKnown RBP8.48□□□□□ -1.05
CUX1-202ENST00000292538 SUMO4Q6EEV6 95 aa8.48□□□□□ -1.05
CUX1-202ENST00000292538 GTSCR1Q86UQ5 136 aa8.48□□□□□ -1.05
CUX1-202ENST00000292538 SCGB3A1Q96QR1 104 aa8.48□□□□□ -1.05
CUX1-202ENST00000292538 RBMY1BA6NDE4 496 aaKnown RBP8.47□□□□□ -1.05
CUX1-202ENST00000292538 RBMY1EA6NEQ0 496 aaKnown RBP8.47□□□□□ -1.05
CUX1-202ENST00000292538 RBMY1DP0C7P1 496 aaKnown RBP8.47□□□□□ -1.05
CUX1-202ENST00000292538 ZNF25P17030 456 aaPredicted RBP8.47□□□□□ -1.05
CUX1-202ENST00000292538 TRBV7-9A0A0J9YWB2 115 aa8.47□□□□□ -1.05
CUX1-202ENST00000292538 EMP1P54849 157 aa8.47□□□□□ -1.05
CUX1-202ENST00000292538 AMTNQ6UX39 209 aa8.47□□□□□ -1.05
CUX1-202ENST00000292538 SYT8Q8NBV8 401 aa8.47□□□□□ -1.05
CUX1-202ENST00000292538 WFDC10AQ9H1F0 79 aa8.47□□□□□ -1.05
CUX1-202ENST00000292538 ANK3Q12955 4377 aaKnown RBP8.47□□□□□ -1.05
CUX1-202ENST00000292538 LY6G6DO95868 133 aa8.47□□□□□ -1.05
CUX1-202ENST00000292538 PROK1P58294 105 aa8.47□□□□□ -1.05
CUX1-202ENST00000292538 LBHQ53QV2 105 aaPredicted RBP8.47□□□□□ -1.05
CUX1-202ENST00000292538 HLA-DRB4P13762 266 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 ZC2HC1BQ5TFG8 222 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 PCP2Q8IVA1 136 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 STHQ8IWL8 128 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 MRPL35Q9NZE8 188 aaKnown RBP8.46□□□□□ -1.06
CUX1-202ENST00000292538 HLA-DRB4X5D2U9 266 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.46□□□□□ -1.06
CUX1-202ENST00000292538 P0DMU3 169 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 FAM231AP0DMU4 169 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 FAM231CP0DMU5 169 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 LGALS9BQ3B8N2 356 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 COL5A1-AS1Q5SY13 56 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 LGALS9CQ6DKI2 356 aa8.46□□□□□ -1.06
CUX1-202ENST00000292538 TSSC4Q9Y5U2 329 aaPredicted RBP8.46□□□□□ -1.06
CUX1-202ENST00000292538 INAFM1C9JVW0 142 aa8.45□□□□□ -1.06
CUX1-202ENST00000292538 ATRQ13535 2644 aa8.45□□□□□ -1.06
CUX1-202ENST00000292538 NBEAL2Q6ZNJ1 2754 aa8.45□□□□□ -1.06
CUX1-202ENST00000292538 SDHAF1A6NFY7 115 aa8.45□□□□□ -1.06
CUX1-202ENST00000292538 HIVEP1P15822 2718 aa8.45□□□□□ -1.06
CUX1-202ENST00000292538 RPL39P62891 51 aaKnown RBP8.45□□□□□ -1.06
CUX1-202ENST00000292538 C2orf66Q6UXQ4 117 aa8.45□□□□□ -1.06
CUX1-202ENST00000292538 CLUHP3Q96NS8 147 aa8.45□□□□□ -1.06
CUX1-202ENST00000292538 RPL35AP18077 110 aaKnown RBP8.44□□□□□ -1.06
CUX1-202ENST00000292538 LINC00315P59091 139 aa8.44□□□□□ -1.06
CUX1-202ENST00000292538 TRAV8-6A0A0B4J262 113 aa8.44□□□□□ -1.06
CUX1-202ENST00000292538 ATP5LO75964 103 aa8.44□□□□□ -1.06
CUX1-202ENST00000292538 IGKCP01834 107 aa8.44□□□□□ -1.06
CUX1-202ENST00000292538 RNASE1P07998 156 aaKnown RBP8.44□□□□□ -1.06
CUX1-202ENST00000292538 OR11H12B2RN74 326 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 MED14OSP0DP75 135 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 ODF3L2Q3SX64 289 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 ORMDL2Q53FV1 153 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 KIR2DL4Q99706 377 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 MRPL16Q9NX20 251 aaKnown RBP8.43□□□□□ -1.06
CUX1-202ENST00000292538 KIF25-AS1Q9Y6Z4 181 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 TRGV11A0A075B6L2 103 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 C9orf85Q96MD7 179 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 MRPS16Q9Y3D3 137 aaKnown RBP8.43□□□□□ -1.06
CUX1-202ENST00000292538 VWFP04275 2813 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 IGKV2D-26A0A0A0MRZ7 120 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 CRYGDP07320 174 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 ODF3Q96PU9 254 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 SPAG8Q99932 426 aaPredicted RBP8.43□□□□□ -1.06
CUX1-202ENST00000292538 C20orf78Q9BR46 151 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 TP53TG1Q9Y2A0 90 aa8.43□□□□□ -1.06
CUX1-202ENST00000292538 DPM2O94777 84 aa8.42□□□□□ -1.06
CUX1-202ENST00000292538 COX8AP10176 69 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms