RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ID1P41134 155 aa12.43□□□□□ -0.42
VPS54-201ENST00000272322 SRSF2Q01130 221 aaKnown RBP12.43□□□□□ -0.42
VPS54-201ENST00000272322 Q8N1Y9 231 aa12.43□□□□□ -0.42
VPS54-201ENST00000272322 LINC01356Q8N9X3 169 aa12.43□□□□□ -0.42
VPS54-201ENST00000272322 PSMB8P28062 276 aa12.42□□□□□ -0.42
VPS54-201ENST00000272322 HOXD3P31249 432 aaPredicted RBP12.42□□□□□ -0.42
VPS54-201ENST00000272322 TP53TG1Q9Y2A0 90 aa12.42□□□□□ -0.42
VPS54-201ENST00000272322 PRSS29PA6NIE9 313 aa12.42□□□□□ -0.42
VPS54-201ENST00000272322 SEC11AP67812 179 aa12.42□□□□□ -0.42
VPS54-201ENST00000272322 OR9G4Q8NGQ1 327 aa12.42□□□□□ -0.42
VPS54-201ENST00000272322 SPCS1Q9Y6A9 102 aa12.42□□□□□ -0.42
VPS54-201ENST00000272322 AMTNQ6UX39 209 aa12.42□□□□□ -0.42
VPS54-201ENST00000272322 IGHV3OR16-12A0A075B7B8 117 aa12.41□□□□□ -0.42
VPS54-201ENST00000272322 A0A087WX48 190 aa12.41□□□□□ -0.42
VPS54-201ENST00000272322 P0DMU3 169 aa12.41□□□□□ -0.42
VPS54-201ENST00000272322 FAM231AP0DMU4 169 aa12.41□□□□□ -0.42
VPS54-201ENST00000272322 FAM231CP0DMU5 169 aa12.41□□□□□ -0.42
VPS54-201ENST00000272322 SUMO4Q6EEV6 95 aa12.41□□□□□ -0.42
VPS54-201ENST00000272322 SCGB1D4Q6XE38 83 aa12.41□□□□□ -0.42
VPS54-201ENST00000272322 PROK1P58294 105 aa12.41□□□□□ -0.42
VPS54-201ENST00000272322 SNRPD3P62318 126 aaKnown RBP12.41□□□□□ -0.42
VPS54-201ENST00000272322 RNASE13Q5GAN3 156 aaKnown RBP12.4□□□□□ -0.42
VPS54-201ENST00000272322 SDHAF1A6NFY7 115 aa12.4□□□□□ -0.42
VPS54-201ENST00000272322 C9orf118A6NHY6 69 aa12.4□□□□□ -0.42
VPS54-201ENST00000272322 TCTEX1D4Q5JR98 221 aa12.4□□□□□ -0.42
VPS54-201ENST00000272322 AKAP9Q99996 3911 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 OR11H12B2RN74 326 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 SMIM13P0DJ93 91 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 DEFB131AP59861 70 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 RBX1P62877 108 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 RPL24P83731 157 aaKnown RBP12.39□□□□□ -0.43
VPS54-201ENST00000272322 ZNF876PQ49A33 203 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 TMEM170BQ5T4T1 132 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 OR11H1Q8NG94 326 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 OR11H2Q8NH07 326 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 MRAP2Q96G30 205 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 RIPPLY3P57055 190 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 BAALCQ8WXS3 180 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 Q9UF83 564 aa12.39□□□□□ -0.43
VPS54-201ENST00000272322 APRG1Q8IVJ8 170 aa12.38□□□□□ -0.43
VPS54-201ENST00000272322 CBY1Q9Y3M2 126 aa12.38□□□□□ -0.43
VPS54-201ENST00000272322 F8VRH5 84 aa12.38□□□□□ -0.43
VPS54-201ENST00000272322 H7C1H1 209 aa12.38□□□□□ -0.43
VPS54-201ENST00000272322 SLC25A16P16260 332 aa12.38□□□□□ -0.43
VPS54-201ENST00000272322 CRIP2P52943 208 aaPredicted RBP12.38□□□□□ -0.43
VPS54-201ENST00000272322 KLK9Q2XQG4 91 aa12.38□□□□□ -0.43
VPS54-201ENST00000272322 ORMDL2Q53FV1 153 aa12.38□□□□□ -0.43
VPS54-201ENST00000272322 SAMD5Q5TGI4 173 aa12.38□□□□□ -0.43
VPS54-201ENST00000272322 OCIAD2Q56VL3 154 aa12.38□□□□□ -0.43
VPS54-201ENST00000272322 Q96MF0 132 aa12.37□□□□□ -0.43
VPS54-201ENST00000272322 LENEPQ9Y5L5 61 aa12.37□□□□□ -0.43
VPS54-201ENST00000272322 UBR5O95071 2799 aaPredicted RBP12.37□□□□□ -0.43
VPS54-201ENST00000272322 PRADC1Q9BSG0 188 aa12.37□□□□□ -0.43
VPS54-201ENST00000272322 H3BRM9 83 aa12.36□□□□□ -0.43
VPS54-201ENST00000272322 CFHR3Q02985 330 aa12.36□□□□□ -0.43
VPS54-201ENST00000272322 Q5PR19 223 aa12.36□□□□□ -0.43
VPS54-201ENST00000272322 ZMAT4Q9H898 229 aa12.36□□□□□ -0.43
VPS54-201ENST00000272322 IGHV4-4A0A075B6R2 117 aa12.36□□□□□ -0.43
VPS54-201ENST00000272322 SRSF9Q13242 221 aaKnown RBP eCLIP12.36□□□□□ -0.437e-6■■■■□ 19.5
VPS54-201ENST00000272322 CEMP1Q6PRD7 247 aaPredicted RBP12.36□□□□□ -0.43
VPS54-201ENST00000272322 KIR2DL4Q99706 377 aa12.36□□□□□ -0.43
VPS54-201ENST00000272322 IGHV3-16A0A0C4DH30 117 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 ZNF815PA8K554 130 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 TENM4Q6N022 2769 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 A0A0J9YX75 114 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 FABP2P12104 132 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 GCN1Q92616 2671 aaKnown RBP12.35□□□□□ -0.43
VPS54-201ENST00000272322 PLEKHB2Q96CS7 222 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 SETXQ7Z333 2677 aaKnown RBP12.35□□□□□ -0.43
VPS54-201ENST00000272322 KLLNB2CW77 178 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 H3BUA1 57 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 APOMO95445 188 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 GTF2H5Q6ZYL4 71 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 VPREB3Q9UKI3 123 aa12.35□□□□□ -0.43
VPS54-201ENST00000272322 A0A1W2PPM0 123 aa12.34□□□□□ -0.43
VPS54-201ENST00000272322 CDKN1BP46527 198 aa12.34□□□□□ -0.43
VPS54-201ENST00000272322 LINC00315P59091 139 aa12.34□□□□□ -0.43
VPS54-201ENST00000272322 TOMM6Q96B49 74 aa12.34□□□□□ -0.43
VPS54-201ENST00000272322 C11orf86A6NJI1 115 aa12.34□□□□□ -0.43
VPS54-201ENST00000272322 ZFP2Q6ZN57 461 aa12.34□□□□□ -0.43
VPS54-201ENST00000272322 HLA-DRB4P13762 266 aa12.34□□□□□ -0.43
VPS54-201ENST00000272322 HLA-DRB4X5D2U9 266 aa12.34□□□□□ -0.43
VPS54-201ENST00000272322 CEND1Q8N111 149 aa12.33□□□□□ -0.44
VPS54-201ENST00000272322 NEXN-AS1Q8NBZ9 246 aa12.33□□□□□ -0.44
VPS54-201ENST00000272322 IGHV3-38A0A0C4DH36 116 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 PLNP26678 52 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 FAM19A4Q96LR4 140 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 ADARB2-AS1A8MUL3 147 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 TSHBP01222 138 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 RBMY1A1P0DJD3 496 aaKnown RBP12.32□□□□□ -0.44
VPS54-201ENST00000272322 RBMY1CP0DJD4 496 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 RBMY1FQ15415 496 aaKnown RBP12.32□□□□□ -0.44
VPS54-201ENST00000272322 IGHV1OR15-1A0A075B7D0 117 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 H3BMG7 143 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 TMEM61Q8N0U2 210 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 UBE2E2Q96LR5 201 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 C20orf78Q9BR46 151 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 KIF25-AS1Q9Y6Z4 181 aa12.32□□□□□ -0.44
VPS54-201ENST00000272322 K7EQG2 157 aa12.31□□□□□ -0.44
VPS54-201ENST00000272322 IGHV4-31P0DP07 118 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms