RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 SPANXA1Q9NS26 97 aa12.78□□□□□ -0.36
PHRF1-201ENST00000264555 ATG2AQ2TAZ0 1938 aa12.78□□□□□ -0.36
PHRF1-201ENST00000264555 F8W1H4 67 aa12.78□□□□□ -0.36
PHRF1-201ENST00000264555 IGHG4P01861 327 aa12.78□□□□□ -0.36
PHRF1-201ENST00000264555 MYCNOSP40205 109 aa12.78□□□□□ -0.36
PHRF1-201ENST00000264555 RNASE13Q5GAN3 156 aaKnown RBP12.78□□□□□ -0.36
PHRF1-201ENST00000264555 GDF5OSQ5U4N7 250 aa12.78□□□□□ -0.36
PHRF1-201ENST00000264555 K7ERJ3 54 aa12.78□□□□□ -0.36
PHRF1-201ENST00000264555 C12orf74Q32Q52 190 aa12.78□□□□□ -0.36
PHRF1-201ENST00000264555 C4orf3Q8WVX3 66 aa12.77□□□□□ -0.36
PHRF1-201ENST00000264555 TRAV12-1A0A0B4J245 112 aa12.77□□□□□ -0.37
PHRF1-201ENST00000264555 SPINK8P0C7L1 97 aa12.77□□□□□ -0.37
PHRF1-201ENST00000264555 K7EP13 123 aa12.77□□□□□ -0.37
PHRF1-201ENST00000264555 DEFB121Q5J5C9 76 aa12.77□□□□□ -0.37
PHRF1-201ENST00000264555 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.76□□□□□ -0.37
PHRF1-201ENST00000264555 TRAV25A0A0B4J276 109 aa12.76□□□□□ -0.37
PHRF1-201ENST00000264555 A0A0J9YX75 114 aa12.76□□□□□ -0.37
PHRF1-201ENST00000264555 IGKV2-29A2NJV5 120 aaPredicted RBP12.76□□□□□ -0.37
PHRF1-201ENST00000264555 GAGE2BQ13066 116 aa12.75□□□□□ -0.37
PHRF1-201ENST00000264555 GAGE2EQ4V326 116 aa12.75□□□□□ -0.37
PHRF1-201ENST00000264555 TOMM6Q96B49 74 aa12.75□□□□□ -0.37
PHRF1-201ENST00000264555 GAGE2DQ9UEU5 116 aa12.75□□□□□ -0.37
PHRF1-201ENST00000264555 CPAMD8Q8IZJ3 1885 aa12.75□□□□□ -0.37
PHRF1-201ENST00000264555 IGLC6P0CF74 106 aa12.75□□□□□ -0.37
PHRF1-201ENST00000264555 FGF6P10767 208 aa12.74□□□□□ -0.37
PHRF1-201ENST00000264555 Q8N6K4 173 aa12.74□□□□□ -0.37
PHRF1-201ENST00000264555 C16orf74Q96GX8 76 aa12.74□□□□□ -0.37
PHRF1-201ENST00000264555 ZFAND3Q9H8U3 227 aa12.74□□□□□ -0.37
PHRF1-201ENST00000264555 LRRC75A-AS1Q8N1F1 130 aa12.74□□□□□ -0.37
PHRF1-201ENST00000264555 CENPFP49454 3210 aa12.74□□□□□ -0.37
PHRF1-201ENST00000264555 PFN2P35080 140 aa12.73□□□□□ -0.37
PHRF1-201ENST00000264555 SPATA12Q7Z6I5 190 aa12.73□□□□□ -0.37
PHRF1-201ENST00000264555 PIEZO2Q9H5I5 2752 aa12.73□□□□□ -0.37
PHRF1-201ENST00000264555 ETDBQ3ZM63 59 aa12.72□□□□□ -0.37
PHRF1-201ENST00000264555 Q6ZVH6 145 aa12.72□□□□□ -0.37
PHRF1-201ENST00000264555 GTSF1LQ9H1H1 148 aa12.72□□□□□ -0.37
PHRF1-201ENST00000264555 TIMM17AQ99595 171 aa12.72□□□□□ -0.37
PHRF1-201ENST00000264555 KIAA1549Q9HCM3 1950 aa12.72□□□□□ -0.37
PHRF1-201ENST00000264555 ODF1Q14990 250 aa12.71□□□□□ -0.38
PHRF1-201ENST00000264555 TMEM61Q8N0U2 210 aa12.71□□□□□ -0.38
PHRF1-201ENST00000264555 BAALCQ8WXS3 180 aa12.71□□□□□ -0.38
PHRF1-201ENST00000264555 HIGD1BQ9P298 99 aa12.71□□□□□ -0.38
PHRF1-201ENST00000264555 IGF2RP11717 2491 aa12.71□□□□□ -0.38
PHRF1-201ENST00000264555 H3BMG7 143 aa12.71□□□□□ -0.38
PHRF1-201ENST00000264555 K7EQD1 137 aa12.71□□□□□ -0.38
PHRF1-201ENST00000264555 C9orf66Q5T8R8 295 aa12.7□□□□□ -0.38
PHRF1-201ENST00000264555 SMAD5-AS1Q9Y6J3 95 aa12.7□□□□□ -0.38
PHRF1-201ENST00000264555 RPL39P62891 51 aaKnown RBP12.7□□□□□ -0.38
PHRF1-201ENST00000264555 Q6YL49 198 aa12.7□□□□□ -0.38
PHRF1-201ENST00000264555 MDFICQ9P1T7 246 aa12.7□□□□□ -0.38
PHRF1-201ENST00000264555 DAZ2Q13117 558 aaKnown RBP12.7□□□□□ -0.38
PHRF1-201ENST00000264555 DAZ4Q86SG3 579 aaKnown RBP12.7□□□□□ -0.38
PHRF1-201ENST00000264555 UBE2DNLQ8IWF7 75 aa12.7□□□□□ -0.38
PHRF1-201ENST00000264555 DAZ3Q9NR90 486 aaKnown RBP12.7□□□□□ -0.38
PHRF1-201ENST00000264555 PPDPFLQ8WWR9 84 aa12.7□□□□□ -0.38
PHRF1-201ENST00000264555 A0A0J9YXV3 536 aa12.69□□□□□ -0.38
PHRF1-201ENST00000264555 ODF3Q96PU9 254 aa12.69□□□□□ -0.38
PHRF1-201ENST00000264555 CRIP1P50238 77 aa12.69□□□□□ -0.38
PHRF1-201ENST00000264555 LGALS9O00182 355 aa12.69□□□□□ -0.38
PHRF1-201ENST00000264555 IGLV2-11P01706 119 aa12.69□□□□□ -0.38
PHRF1-201ENST00000264555 PRSS47A8MTI9 375 aa12.69□□□□□ -0.38
PHRF1-201ENST00000264555 ZNF561-AS1K7EIQ3 104 aa12.69□□□□□ -0.38
PHRF1-201ENST00000264555 IGHV4-31P0DP07 118 aa12.69□□□□□ -0.38
PHRF1-201ENST00000264555 DSCAMO60469 2012 aa12.68□□□□□ -0.38
PHRF1-201ENST00000264555 H3BMM0 161 aa12.68□□□□□ -0.38
PHRF1-201ENST00000264555 UBE2WQ96B02 151 aa12.68□□□□□ -0.38
PHRF1-201ENST00000264555 LAMTOR3Q9UHA4 124 aa12.68□□□□□ -0.38
PHRF1-201ENST00000264555 CSPG4Q6UVK1 2322 aa12.68□□□□□ -0.38
PHRF1-201ENST00000264555 A0A096LPF7 62 aa12.68□□□□□ -0.38
PHRF1-201ENST00000264555 NCOR2Q9Y618 2525 aa12.68□□□□□ -0.38
PHRF1-201ENST00000264555 EXPH5Q8NEV8 1989 aa12.68□□□□□ -0.38
PHRF1-201ENST00000264555 CDSNQ15517 529 aa12.68□□□□□ -0.38
PHRF1-201ENST00000264555 HCFC1P51610 2035 aa12.67□□□□□ -0.38
PHRF1-201ENST00000264555 AMTNQ6UX39 209 aa12.67□□□□□ -0.38
PHRF1-201ENST00000264555 ANGP03950 147 aaKnown RBP12.67□□□□□ -0.38
PHRF1-201ENST00000264555 CFC1BP0CG36 223 aa12.67□□□□□ -0.38
PHRF1-201ENST00000264555 CFC1P0CG37 223 aa12.67□□□□□ -0.38
PHRF1-201ENST00000264555 TRAV13-2A0A0B4J235 113 aa12.67□□□□□ -0.38
PHRF1-201ENST00000264555 Q9H8V8 135 aa12.67□□□□□ -0.38
PHRF1-201ENST00000264555 TP53TG3Q9ULZ0 132 aa12.67□□□□□ -0.38
PHRF1-201ENST00000264555 ATRXP46100 2492 aa12.67□□□□□ -0.38
PHRF1-201ENST00000264555 PIEZO1Q92508 2521 aa12.67□□□□□ -0.38
PHRF1-201ENST00000264555 E9PLD3 99 aa12.66□□□□□ -0.38
PHRF1-201ENST00000264555 C20orf173Q96LM9 149 aa12.66□□□□□ -0.38
PHRF1-201ENST00000264555 COL4A2P08572 1712 aa12.66□□□□□ -0.38
PHRF1-201ENST00000264555 DNAJC9-AS1A6NH13 148 aa12.66□□□□□ -0.38
PHRF1-201ENST00000264555 SLC25A29Q8N8R3 303 aa12.66□□□□□ -0.38
PHRF1-201ENST00000264555 CITED2Q99967 270 aaPredicted RBP12.66□□□□□ -0.38
PHRF1-201ENST00000264555 TLN1Q9Y490 2541 aaKnown RBP12.66□□□□□ -0.38
PHRF1-201ENST00000264555 PLXNB1O43157 2135 aa12.66□□□□□ -0.38
PHRF1-201ENST00000264555 TTTY13Q9BZ97 58 aa12.66□□□□□ -0.38
PHRF1-201ENST00000264555 TRBV7-3A0A075B6L6 115 aa12.65□□□□□ -0.38
PHRF1-201ENST00000264555 K7EQG2 157 aa12.65□□□□□ -0.38
PHRF1-201ENST00000264555 HERV-K104P63124 156 aa12.65□□□□□ -0.38
PHRF1-201ENST00000264555 IGLL5B9A064 214 aa12.65□□□□□ -0.38
PHRF1-201ENST00000264555 CCL25O15444 150 aa12.65□□□□□ -0.38
PHRF1-201ENST00000264555 MAP6D1Q9H9H5 199 aa12.65□□□□□ -0.38
PHRF1-201ENST00000264555 NXPH4O95158 308 aa12.64□□□□□ -0.39
PHRF1-201ENST00000264555 INAFM2P0DMQ5 153 aa12.64□□□□□ -0.39
PHRF1-201ENST00000264555 UTRNP46939 3433 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms