RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 PPBPP02775 128 aa10.98□□□□□ -0.65
CCDC47-201ENST00000225726 CD7P09564 240 aa10.98□□□□□ -0.65
CCDC47-201ENST00000225726 CKS2P33552 79 aa10.98□□□□□ -0.65
CCDC47-201ENST00000225726 RAB37Q96AX2 223 aa10.98□□□□□ -0.65
CCDC47-201ENST00000225726 K7EP13 123 aa10.98□□□□□ -0.65
CCDC47-201ENST00000225726 FXYD7P58549 80 aa10.98□□□□□ -0.65
CCDC47-201ENST00000225726 SETXQ7Z333 2677 aaKnown RBP10.98□□□□□ -0.65
CCDC47-201ENST00000225726 AGRNO00468 2067 aa10.97□□□□□ -0.65
CCDC47-201ENST00000225726 OR11H12B2RN74 326 aa10.97□□□□□ -0.65
CCDC47-201ENST00000225726 NXPH4O95158 308 aa10.97□□□□□ -0.65
CCDC47-201ENST00000225726 LINC00482Q8N8I6 264 aa10.97□□□□□ -0.65
CCDC47-201ENST00000225726 EVI2AP22794 236 aa10.97□□□□□ -0.65
CCDC47-201ENST00000225726 M0R381 172 aa10.97□□□□□ -0.65
CCDC47-201ENST00000225726 CRXO43186 299 aaPredicted RBP10.97□□□□□ -0.65
CCDC47-201ENST00000225726 IGHV3-16A0A0C4DH30 117 aa10.96□□□□□ -0.65
CCDC47-201ENST00000225726 PMCHL2Q9BQD1 86 aa10.96□□□□□ -0.65
CCDC47-201ENST00000225726 C20orf144Q9BQM9 153 aa10.96□□□□□ -0.65
CCDC47-201ENST00000225726 SMKR1H3BMG3 65 aa10.96□□□□□ -0.66
CCDC47-201ENST00000225726 NCR2O95944 276 aa10.95□□□□□ -0.66
CCDC47-201ENST00000225726 C9orf85Q96MD7 179 aa10.95□□□□□ -0.66
CCDC47-201ENST00000225726 TRGV11A0A075B6L2 103 aa10.95□□□□□ -0.66
CCDC47-201ENST00000225726 STHQ8IWL8 128 aa10.95□□□□□ -0.66
CCDC47-201ENST00000225726 Q8N1Y9 231 aa10.95□□□□□ -0.66
CCDC47-201ENST00000225726 FAM110AQ9BQ89 295 aa10.95□□□□□ -0.66
CCDC47-201ENST00000225726 SPRY2O43597 315 aa10.94□□□□□ -0.66
CCDC47-201ENST00000225726 NPYP01303 97 aa10.94□□□□□ -0.66
CCDC47-201ENST00000225726 RBMY1A1P0DJD3 496 aaKnown RBP10.94□□□□□ -0.66
CCDC47-201ENST00000225726 RBMY1CP0DJD4 496 aa10.94□□□□□ -0.66
CCDC47-201ENST00000225726 IGLC3P0DOY3 106 aa10.94□□□□□ -0.66
CCDC47-201ENST00000225726 RBMY1FQ15415 496 aaKnown RBP10.94□□□□□ -0.66
CCDC47-201ENST00000225726 BEAN1Q3B7T3 259 aa10.94□□□□□ -0.66
CCDC47-201ENST00000225726 PRSS3P2Q8NHM4 247 aa10.94□□□□□ -0.66
CCDC47-201ENST00000225726 AP1S3Q96PC3 154 aa10.94□□□□□ -0.66
CCDC47-201ENST00000225726 FA2HQ7L5A8 372 aa10.94□□□□□ -0.66
CCDC47-201ENST00000225726 CITED1Q99966 193 aa10.94□□□□□ -0.66
CCDC47-201ENST00000225726 DPH3P1Q9H4G8 78 aa10.94□□□□□ -0.66
CCDC47-201ENST00000225726 TRPT1Q86TN4 253 aaKnown RBP10.93□□□□□ -0.66
CCDC47-201ENST00000225726 MRAP2Q96G30 205 aa10.93□□□□□ -0.66
CCDC47-201ENST00000225726 SORL1Q92673 2214 aa10.93□□□□□ -0.66
CCDC47-201ENST00000225726 IGHV1-24A0A0C4DH33 117 aa10.93□□□□□ -0.66
CCDC47-201ENST00000225726 CRYBA4P53673 196 aa10.93□□□□□ -0.66
CCDC47-201ENST00000225726 MTURNQ8N3F0 131 aa10.93□□□□□ -0.66
CCDC47-201ENST00000225726 MDFICQ9P1T7 246 aa10.93□□□□□ -0.66
CCDC47-201ENST00000225726 WNK1Q9H4A3 2382 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 INSP01308 110 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 AZU1P20160 251 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 IFI27P40305 119 aaPredicted RBP10.92□□□□□ -0.66
CCDC47-201ENST00000225726 TEX43Q6ZNM6 134 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 LINC00467Q9BRT7 94 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 MAP1LC3AQ9H492 121 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 AP5S1Q9NUS5 200 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 LOC389332A0A1B0GUA5 103 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 TNFRSF6BO95407 300 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 PMCHL1Q16048 86 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 SYT8Q8NBV8 401 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 SS18L2Q9UHA2 77 aa10.92□□□□□ -0.66
CCDC47-201ENST00000225726 TRAV8-6A0A0B4J262 113 aa10.91□□□□□ -0.66
CCDC47-201ENST00000225726 GAGE10A6NGK3 116 aa10.91□□□□□ -0.66
CCDC47-201ENST00000225726 GAS8-AS1O95177 125 aa10.91□□□□□ -0.66
CCDC47-201ENST00000225726 C2CD3Q4AC94 2353 aa10.91□□□□□ -0.66
CCDC47-201ENST00000225726 C14orf178Q8N769 122 aaPredicted RBP10.91□□□□□ -0.66
CCDC47-201ENST00000225726 SETD2Q9BYW2 2564 aaPredicted RBP10.91□□□□□ -0.66
CCDC47-201ENST00000225726 POM121L12Q8N7R1 296 aa10.9□□□□□ -0.66
CCDC47-201ENST00000225726 C19orf73Q9NVV2 129 aa10.9□□□□□ -0.66
CCDC47-201ENST00000225726 GATA1P15976 413 aaPredicted RBP10.9□□□□□ -0.66
CCDC47-201ENST00000225726 NRACQ8N912 160 aa10.9□□□□□ -0.66
CCDC47-201ENST00000225726 MUC4Q99102 2169 aa10.9□□□□□ -0.67
CCDC47-201ENST00000225726 TRAV26-2A0A0B4J265 109 aa10.89□□□□□ -0.67
CCDC47-201ENST00000225726 INSL3P51460 131 aa10.89□□□□□ -0.67
CCDC47-201ENST00000225726 SHISA2Q6UWI4 295 aa10.89□□□□□ -0.67
CCDC47-201ENST00000225726 KIF25-AS1Q9Y6Z4 181 aa10.89□□□□□ -0.67
CCDC47-201ENST00000225726 hDV102S1A0JD36 115 aa10.89□□□□□ -0.67
CCDC47-201ENST00000225726 LINC01546A6NGU7 62 aa10.89□□□□□ -0.67
CCDC47-201ENST00000225726 MGPP08493 103 aa10.89□□□□□ -0.67
CCDC47-201ENST00000225726 C3orf79P0CE67 100 aa10.89□□□□□ -0.67
CCDC47-201ENST00000225726 SMIM17P0DL12 118 aa10.89□□□□□ -0.67
CCDC47-201ENST00000225726 NXT2Q9NPJ8 142 aaKnown RBP10.89□□□□□ -0.67
CCDC47-201ENST00000225726 C9orf66Q5T8R8 295 aa10.88□□□□□ -0.67
CCDC47-201ENST00000225726 DEFB125Q8N687 156 aa10.88□□□□□ -0.67
CCDC47-201ENST00000225726 LINC01587Q99440 93 aa10.88□□□□□ -0.67
CCDC47-201ENST00000225726 GTF2H5Q6ZYL4 71 aa10.88□□□□□ -0.67
CCDC47-201ENST00000225726 CKS1BP61024 79 aa10.88□□□□□ -0.67
CCDC47-201ENST00000225726 XCL2Q9UBD3 114 aa10.88□□□□□ -0.67
CCDC47-201ENST00000225726 F8P00451 2351 aa10.87□□□□□ -0.67
CCDC47-201ENST00000225726 LEPROTL1O95214 131 aa10.87□□□□□ -0.67
CCDC47-201ENST00000225726 ZNF415Q09FC8 603 aa10.87□□□□□ -0.67
CCDC47-201ENST00000225726 LINC00315P59091 139 aa10.87□□□□□ -0.67
CCDC47-201ENST00000225726 HTN1P15515 57 aa10.86□□□□□ -0.67
CCDC47-201ENST00000225726 Q8N8P6 123 aa10.86□□□□□ -0.67
CCDC47-201ENST00000225726 JPT2Q9H910 190 aa10.86□□□□□ -0.67
CCDC47-201ENST00000225726 FLNBO75369 2602 aaKnown RBP10.86□□□□□ -0.67
CCDC47-201ENST00000225726 A0A1B0GV72 72 aa10.86□□□□□ -0.67
CCDC47-201ENST00000225726 H3BUT2 72 aa10.86□□□□□ -0.67
CCDC47-201ENST00000225726 Q8N976 141 aa10.86□□□□□ -0.67
CCDC47-201ENST00000225726 HSPB8Q9UJY1 196 aa10.86□□□□□ -0.67
CCDC47-201ENST00000225726 RASL10AQ92737 203 aa10.86□□□□□ -0.67
CCDC47-201ENST00000225726 WFDC10AQ9H1F0 79 aa10.86□□□□□ -0.67
CCDC47-201ENST00000225726 IGLL1P15814 213 aa10.85□□□□□ -0.67
CCDC47-201ENST00000225726 IGLV2-18A0A075B6J9 118 aa10.85□□□□□ -0.67
CCDC47-201ENST00000225726 CYSRT1A8MQ03 144 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms