RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TMEM75Q8N9X5 138 aa10.92□□□□□ -0.66
CLN3-264ENST00000637985 SGK494Q96LW2 274 aa10.92□□□□□ -0.66
CLN3-264ENST00000637985 C9JCJ5 164 aa10.91□□□□□ -0.66
CLN3-264ENST00000637985 IGLV2-11P01706 119 aa10.91□□□□□ -0.66
CLN3-264ENST00000637985 GYPEP15421 78 aa10.91□□□□□ -0.66
CLN3-264ENST00000637985 FLI1Q01543 452 aaPredicted RBP10.91□□□□□ -0.66
CLN3-264ENST00000637985 RGS21Q2M5E4 152 aa10.91□□□□□ -0.66
CLN3-264ENST00000637985 ZFP69Q49AA0 526 aa10.91□□□□□ -0.66
CLN3-264ENST00000637985 SMUG1Q53HV7 270 aa10.91□□□□□ -0.66
CLN3-264ENST00000637985 Q8N814 137 aa10.91□□□□□ -0.66
CLN3-264ENST00000637985 CYB561D1Q8N8Q1 229 aa10.91□□□□□ -0.66
CLN3-264ENST00000637985 TXNDC17Q9BRA2 123 aa10.91□□□□□ -0.66
CLN3-264ENST00000637985 PKHD1L1Q86WI1 4243 aa10.91□□□□□ -0.66
CLN3-264ENST00000637985 CTXND1A0A1B0GTU2 59 aa10.9□□□□□ -0.66
CLN3-264ENST00000637985 CIDEAO60543 219 aa10.9□□□□□ -0.66
CLN3-264ENST00000637985 GCGP01275 180 aa10.9□□□□□ -0.66
CLN3-264ENST00000637985 PFN1P07737 140 aaKnown RBP10.9□□□□□ -0.66
CLN3-264ENST00000637985 ZNF80P51504 273 aaPredicted RBP10.9□□□□□ -0.66
CLN3-264ENST00000637985 SAPCD1Q5SSQ6 148 aa10.9□□□□□ -0.66
CLN3-264ENST00000637985 SH2D6Q7Z4S9 175 aa10.89□□□□□ -0.67
CLN3-264ENST00000637985 PRNTQ86SH4 94 aa10.89□□□□□ -0.67
CLN3-264ENST00000637985 NKX6-2Q9C056 277 aaPredicted RBP10.89□□□□□ -0.67
CLN3-264ENST00000637985 G3V3Q6 166 aa10.88□□□□□ -0.67
CLN3-264ENST00000637985 EVI2AP22794 236 aa10.88□□□□□ -0.67
CLN3-264ENST00000637985 ZNF726P1Q15940 193 aa10.88□□□□□ -0.67
CLN3-264ENST00000637985 ZNF876PQ49A33 203 aa10.88□□□□□ -0.67
CLN3-264ENST00000637985 AKR1C8PQ5T2L2 129 aa10.88□□□□□ -0.67
CLN3-264ENST00000637985 PTH2Q96A98 100 aa10.88□□□□□ -0.67
CLN3-264ENST00000637985 C11orf21Q9P2W6 132 aa10.88□□□□□ -0.67
CLN3-264ENST00000637985 GATA1P15976 413 aaPredicted RBP10.87□□□□□ -0.67
CLN3-264ENST00000637985 PPT1P50897 306 aa10.87□□□□□ -0.67
CLN3-264ENST00000637985 WFDC10BQ8IUB3 73 aa10.87□□□□□ -0.67
CLN3-264ENST00000637985 C9orf85Q96MD7 179 aa10.87□□□□□ -0.67
CLN3-264ENST00000637985 RS1O15537 224 aa10.86□□□□□ -0.67
CLN3-264ENST00000637985 PSCAO43653 123 aa10.86□□□□□ -0.67
CLN3-264ENST00000637985 IFNA7P01567 189 aa10.86□□□□□ -0.67
CLN3-264ENST00000637985 TIRAPP58753 221 aa10.86□□□□□ -0.67
CLN3-264ENST00000637985 ARPC5O15511 151 aa10.85□□□□□ -0.67
CLN3-264ENST00000637985 CFAP126Q5VTH2 177 aa10.85□□□□□ -0.67
CLN3-264ENST00000637985 HIST1H2BAQ96A08 127 aa10.85□□□□□ -0.67
CLN3-264ENST00000637985 LINC00479Q96M42 142 aa10.85□□□□□ -0.67
CLN3-264ENST00000637985 CYTL1Q9NRR1 136 aa10.85□□□□□ -0.67
CLN3-264ENST00000637985 TRAV34A0A0B4J273 112 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 LOC100131303A0A0U1RQF7 123 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 TRBV6-4A0A1B0GX49 114 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 FAM74A7A6NL05 159 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 FABP5P3A8MUU1 101 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 PEX7O00628 323 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 CRYGDP07320 174 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 RNASE3P12724 160 aaKnown RBP10.84□□□□□ -0.67
CLN3-264ENST00000637985 FGF8P55075 233 aaPredicted RBP10.84□□□□□ -0.67
CLN3-264ENST00000637985 UBE2G2P60604 165 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 C10orf126Q8N4M7 172 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 SLC25A29Q8N8R3 303 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 PRADC1Q9BSG0 188 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 ARL2-SNX15V9GYD0 113 aa10.84□□□□□ -0.67
CLN3-264ENST00000637985 PGPEP1LA6NFU8 196 aa10.83□□□□□ -0.68
CLN3-264ENST00000637985 RHOHQ15669 191 aa10.83□□□□□ -0.68
CLN3-264ENST00000637985 ZNF506Q5JVG8 444 aa10.83□□□□□ -0.68
CLN3-264ENST00000637985 PIK3CD-AS1Q5SR53 167 aa10.83□□□□□ -0.68
CLN3-264ENST00000637985 DPPA3Q6W0C5 159 aa10.83□□□□□ -0.68
CLN3-264ENST00000637985 SCXQ7RTU7 201 aa10.83□□□□□ -0.68
CLN3-264ENST00000637985 NHLRC2Q8NBF2 726 aa10.83□□□□□ -0.68
CLN3-264ENST00000637985 BOLA1Q9Y3E2 137 aa10.83□□□□□ -0.68
CLN3-264ENST00000637985 TNXBP22105 4242 aa10.83□□□□□ -0.68
CLN3-264ENST00000637985 IGKV3D-20A0A0C4DH25 116 aa10.82□□□□□ -0.68
CLN3-264ENST00000637985 MAP1LC3B2A6NCE7 125 aa10.82□□□□□ -0.68
CLN3-264ENST00000637985 S100A4P26447 101 aaKnown RBP10.82□□□□□ -0.68
CLN3-264ENST00000637985 Q86TA4 180 aa10.82□□□□□ -0.68
CLN3-264ENST00000637985 STOML3Q8TAV4 291 aa10.82□□□□□ -0.68
CLN3-264ENST00000637985 TCEAL7Q9BRU2 100 aa10.82□□□□□ -0.68
CLN3-264ENST00000637985 MAP1LC3BQ9GZQ8 125 aa10.82□□□□□ -0.68
CLN3-264ENST00000637985 ZFP30Q9Y2G7 519 aa10.82□□□□□ -0.68
CLN3-264ENST00000637985 MGST1P10620 155 aaKnown RBP10.81□□□□□ -0.68
CLN3-264ENST00000637985 FHITP49789 147 aa10.81□□□□□ -0.68
CLN3-264ENST00000637985 ZNF345Q14585 488 aa10.81□□□□□ -0.68
CLN3-264ENST00000637985 COX8CQ7Z4L0 72 aa10.81□□□□□ -0.68
CLN3-264ENST00000637985 IGHV3-38A0A0C4DH36 116 aa10.8□□□□□ -0.68
CLN3-264ENST00000637985 A8MWV9 139 aa10.8□□□□□ -0.68
CLN3-264ENST00000637985 ASIPP42127 132 aa10.8□□□□□ -0.68
CLN3-264ENST00000637985 ZFP2Q6ZN57 461 aa10.8□□□□□ -0.68
CLN3-264ENST00000637985 KCNRGQ8N5I3 272 aa10.8□□□□□ -0.68
CLN3-264ENST00000637985 FMC1Q96HJ9 113 aa10.8□□□□□ -0.68
CLN3-264ENST00000637985 IL36BQ9NZH7 164 aa10.8□□□□□ -0.68
CLN3-264ENST00000637985 IGHV3-73A0A0B4J1V6 119 aa10.79□□□□□ -0.68
CLN3-264ENST00000637985 TRAV8-6A0A0B4J262 113 aa10.79□□□□□ -0.68
CLN3-264ENST00000637985 TRBV6-1A0A0K0K1D8 114 aa10.79□□□□□ -0.68
CLN3-264ENST00000637985 B4DEV8 164 aa10.79□□□□□ -0.68
CLN3-264ENST00000637985 MT1HL1P0DM35 61 aa10.79□□□□□ -0.68
CLN3-264ENST00000637985 DNLZQ5SXM8 178 aa10.79□□□□□ -0.68
CLN3-264ENST00000637985 HMSDA8MTL9 139 aa10.78□□□□□ -0.68
CLN3-264ENST00000637985 SMLR1H3BR10 107 aa10.78□□□□□ -0.68
CLN3-264ENST00000637985 SEC11BP0C7V7 166 aa10.78□□□□□ -0.68
CLN3-264ENST00000637985 UBE2G1P62253 170 aa10.78□□□□□ -0.68
CLN3-264ENST00000637985 LINC01556Q5JQF7 62 aa10.78□□□□□ -0.68
CLN3-264ENST00000637985 ZC2HC1AQ96GY0 325 aa10.78□□□□□ -0.68
CLN3-264ENST00000637985 PARLQ9H300 379 aa10.78□□□□□ -0.68
CLN3-264ENST00000637985 A0A0D9SG52 128 aa10.77□□□□□ -0.69
CLN3-264ENST00000637985 UMAD1C9J7I0 102 aa10.77□□□□□ -0.69
CLN3-264ENST00000637985 KRBOX1C9JBD0 128 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 804.9 ms