RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 RNF183Q96D59 192 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 RNF185Q96GF1 192 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 HHLA3Q9XRX5 114 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 USP9YO00507 2555 aaPredicted RBP8.53□□□□□ -1.04
CLN3-244ENST00000636147 TRBV6-1A0A0K0K1D8 114 aa8.53□□□□□ -1.04
CLN3-244ENST00000636147 TLN2Q9Y4G6 2542 aa8.53□□□□□ -1.04
CLN3-244ENST00000636147 VCYO14598 125 aa8.53□□□□□ -1.04
CLN3-244ENST00000636147 ZNF876PQ49A33 203 aa8.53□□□□□ -1.04
CLN3-244ENST00000636147 LINC00477Q96M19 166 aa8.53□□□□□ -1.04
CLN3-244ENST00000636147 SDHAF1A6NFY7 115 aa8.52□□□□□ -1.04
CLN3-244ENST00000636147 RPL39P62891 51 aaKnown RBP8.52□□□□□ -1.04
CLN3-244ENST00000636147 PMVKQ15126 192 aa8.52□□□□□ -1.04
CLN3-244ENST00000636147 TEN1Q86WV5 123 aa8.52□□□□□ -1.04
CLN3-244ENST00000636147 PLEKHB2Q96CS7 222 aa8.52□□□□□ -1.04
CLN3-244ENST00000636147 U3KQK5 164 aa8.52□□□□□ -1.05
CLN3-244ENST00000636147 MGAQ8IWI9 3026 aa8.52□□□□□ -1.05
CLN3-244ENST00000636147 BUB3O43684 328 aa8.52□□□□□ -1.05
CLN3-244ENST00000636147 C9orf139Q6ZV77 190 aa8.52□□□□□ -1.05
CLN3-244ENST00000636147 C10orf126Q8N4M7 172 aa8.52□□□□□ -1.05
CLN3-244ENST00000636147 J3QQQ9 107 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 Q6ZQT7 251 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 ANKRD29Q8N6D5 301 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 C3orf56Q8N813 242 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 CD28P10747 220 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 BRD3OSQ6XYD6 125 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 SPTBN4Q9H254 2564 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 TRAV8-3A0A0A6YYJ7 113 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 C11orf86A6NJI1 115 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 MEIG1Q5JSS6 88 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 Q6ZUT4 128 aa8.51□□□□□ -1.05
CLN3-244ENST00000636147 TRAV41A0A0B4J266 112 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 OVOL1O14753 267 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 IGF1P05019 195 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 GRNP28799 593 aaKnown RBP8.5□□□□□ -1.05
CLN3-244ENST00000636147 SAA4P35542 130 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 BAALCQ8WXS3 180 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 IGHV3OR16-12A0A075B7B8 117 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 A4D1N5 150 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 KLRB1Q12918 225 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 RNASE13Q5GAN3 156 aaKnown RBP8.5□□□□□ -1.05
CLN3-244ENST00000636147 TRPT1Q86TN4 253 aaKnown RBP8.5□□□□□ -1.05
CLN3-244ENST00000636147 PIP4P2Q8N4L2 257 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 CRYGBP07316 175 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 GAGE5Q13069 117 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 GAGE6Q13070 117 aa8.5□□□□□ -1.05
CLN3-244ENST00000636147 ZNF625Q96I27 306 aaPredicted RBP8.5□□□□□ -1.05
CLN3-244ENST00000636147 TCL1BO95988 128 aa8.49□□□□□ -1.05
CLN3-244ENST00000636147 ATXN8Q156A1 80 aa8.49□□□□□ -1.05
CLN3-244ENST00000636147 IGFL2Q6UWQ7 119 aa8.49□□□□□ -1.05
CLN3-244ENST00000636147 TNFRSF18Q9Y5U5 241 aa8.49□□□□□ -1.05
CLN3-244ENST00000636147 IGHV7-81A0A0B4J1V7 117 aa8.49□□□□□ -1.05
CLN3-244ENST00000636147 IGKV3OR2-268A0A0C4DH90 116 aa8.49□□□□□ -1.05
CLN3-244ENST00000636147 M0R2P5 195 aa8.49□□□□□ -1.05
CLN3-244ENST00000636147 SMIM20Q8N5G0 67 aa8.49□□□□□ -1.05
CLN3-244ENST00000636147 C11orf21Q9P2W6 132 aa8.49□□□□□ -1.05
CLN3-244ENST00000636147 USP9XQ93008 2570 aaPredicted RBP8.49□□□□□ -1.05
CLN3-244ENST00000636147 JPT2Q9H910 190 aa8.49□□□□□ -1.05
CLN3-244ENST00000636147 TRAV12-2A0A075B6T6 113 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 C15orf53Q8NAA6 179 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 FAM110DQ8TAY7 271 aaPredicted RBP8.48□□□□□ -1.05
CLN3-244ENST00000636147 RHPN1-AS1Q9BWJ2 59 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 SMAD5-AS1Q9Y6J3 95 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 OVOL3O00110 214 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.48□□□□□ -1.05
CLN3-244ENST00000636147 GAGE12JA6NER3 117 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 GAGE7O76087 117 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 CFC1BP0CG36 223 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 CFC1P0CG37 223 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 GAGE12FP0CL80 117 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 GAGE12GP0CL81 117 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 GAGE12IP0CL82 117 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 GAGE4Q13068 117 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 CIRBPQ14011 172 aaKnown RBP8.48□□□□□ -1.05
CLN3-244ENST00000636147 PLA2G2CQ5R387 149 aa8.48□□□□□ -1.05
CLN3-244ENST00000636147 OPRPNQ99935 248 aaPredicted RBP8.48□□□□□ -1.05
CLN3-244ENST00000636147 KNCNA6PVL3 124 aa8.47□□□□□ -1.05
CLN3-244ENST00000636147 M0R1W7 72 aa8.47□□□□□ -1.05
CLN3-244ENST00000636147 XGP55808 180 aa8.47□□□□□ -1.05
CLN3-244ENST00000636147 BOD1L1Q8NFC6 3051 aa8.47□□□□□ -1.05
CLN3-244ENST00000636147 TNRC6BQ9UPQ9 1833 aaKnown RBP8.47□□□□□ -1.05
CLN3-244ENST00000636147 TRBV7-1A0A0A6YYK4 115 aa8.47□□□□□ -1.05
CLN3-244ENST00000636147 IFITM1P13164 125 aa8.47□□□□□ -1.05
CLN3-244ENST00000636147 KLK9Q9UKQ9 250 aa8.47□□□□□ -1.05
CLN3-244ENST00000636147 H3BMM0 161 aa8.46□□□□□ -1.05
CLN3-244ENST00000636147 SNRPD3P62318 126 aaKnown RBP8.46□□□□□ -1.05
CLN3-244ENST00000636147 NDUFA11Q86Y39 141 aa8.46□□□□□ -1.05
CLN3-244ENST00000636147 GATD1Q8NB37 220 aa8.46□□□□□ -1.05
CLN3-244ENST00000636147 UBE2WQ96B02 151 aa8.46□□□□□ -1.05
CLN3-244ENST00000636147 MINOS1Q5TGZ0 78 aa8.46□□□□□ -1.06
CLN3-244ENST00000636147 SPATA25Q9BR10 227 aa8.46□□□□□ -1.06
CLN3-244ENST00000636147 TIMM21Q9BVV7 248 aa8.46□□□□□ -1.06
CLN3-244ENST00000636147 MINOS1-NBL1R4GNA1 71 aa8.46□□□□□ -1.06
CLN3-244ENST00000636147 WDFY3Q8IZQ1 3526 aa8.46□□□□□ -1.06
CLN3-244ENST00000636147 COL6A3P12111 3177 aa8.46□□□□□ -1.06
CLN3-244ENST00000636147 TCTEX1D4Q5JR98 221 aa8.46□□□□□ -1.06
CLN3-244ENST00000636147 MUSTN1Q8IVN3 82 aa8.45□□□□□ -1.06
CLN3-244ENST00000636147 TOMM6Q96B49 74 aa8.45□□□□□ -1.06
CLN3-244ENST00000636147 CCDC168Q8NDH2 2452 aa8.45□□□□□ -1.06
CLN3-244ENST00000636147 TRAV12-1A0A0B4J245 112 aa8.45□□□□□ -1.06
CLN3-244ENST00000636147 A0A0J9YXV3 536 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 138.4 ms