RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 HOXA5P20719 270 aa12.12□□□□□ -0.47
SHKBP1-203ENST00000594298 TAGLN2P37802 199 aaKnown RBP12.12□□□□□ -0.47
SHKBP1-203ENST00000594298 BLOC1S1P78537 153 aa12.12□□□□□ -0.47
SHKBP1-203ENST00000594298 FAM162BQ5T6X4 162 aa12.12□□□□□ -0.47
SHKBP1-203ENST00000594298 C11orf21Q9P2W6 132 aa12.12□□□□□ -0.47
SHKBP1-203ENST00000594298 SCO2A0A1W2PP80 73 aa12.11□□□□□ -0.47
SHKBP1-203ENST00000594298 ORM1P02763 201 aa12.11□□□□□ -0.47
SHKBP1-203ENST00000594298 ESRGQ1W209 222 aa12.11□□□□□ -0.47
SHKBP1-203ENST00000594298 ZC2HC1AQ96GY0 325 aa12.11□□□□□ -0.47
SHKBP1-203ENST00000594298 DNAH5Q8TE73 4624 aa12.1□□□□□ -0.47
SHKBP1-203ENST00000594298 A0A0J9YY99 117 aa12.1□□□□□ -0.47
SHKBP1-203ENST00000594298 S100A4P26447 101 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-203ENST00000594298 NKX2-5P52952 324 aaPredicted RBP12.1□□□□□ -0.47
SHKBP1-203ENST00000594298 BAGE2Q86Y30 109 aa12.1□□□□□ -0.47
SHKBP1-203ENST00000594298 MRPS16Q9Y3D3 137 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-203ENST00000594298 PDE6DO43924 150 aa12.09□□□□□ -0.47
SHKBP1-203ENST00000594298 IGHV3-53P01767 116 aa12.09□□□□□ -0.47
SHKBP1-203ENST00000594298 ALKAL2Q6UX46 152 aa12.09□□□□□ -0.47
SHKBP1-203ENST00000594298 PTH2Q96A98 100 aa12.09□□□□□ -0.47
SHKBP1-203ENST00000594298 PRO0255Q9UI72 69 aa12.09□□□□□ -0.47
SHKBP1-203ENST00000594298 TRAV4A0A0B4J268 109 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 IGKV3D-20A0A0C4DH25 116 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 TRGV4A0A0C4DH28 118 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 B4DEV8 164 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 SH2D1AO60880 128 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 ASIPP42127 132 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 CRIP1P50238 77 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 KRTAP10-2P60368 255 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 MEF2BQ02080 365 aaPredicted RBP12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 ZNF674Q2M3X9 581 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 OR4C5Q8NGB2 326 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 C11orf52Q96A22 123 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 SCRT2Q9NQ03 307 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 VAX2Q9UIW0 290 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 HHLA3Q9XRX5 114 aa12.08□□□□□ -0.48
SHKBP1-203ENST00000594298 C9JCJ5 164 aa12.07□□□□□ -0.48
SHKBP1-203ENST00000594298 PAX4O43316 350 aa12.07□□□□□ -0.48
SHKBP1-203ENST00000594298 CIDEAO60543 219 aa12.07□□□□□ -0.48
SHKBP1-203ENST00000594298 BCL2P10415 239 aa12.07□□□□□ -0.48
SHKBP1-203ENST00000594298 ZNF876PQ49A33 203 aa12.07□□□□□ -0.48
SHKBP1-203ENST00000594298 C9orf85Q96MD7 179 aa12.07□□□□□ -0.48
SHKBP1-203ENST00000594298 KRBOX1C9JBD0 128 aa12.06□□□□□ -0.48
SHKBP1-203ENST00000594298 RPL35P42766 123 aaKnown RBP12.06□□□□□ -0.48
SHKBP1-203ENST00000594298 FHL2Q14192 279 aa12.06□□□□□ -0.48
SHKBP1-203ENST00000594298 LINC01559Q495D7 138 aa12.05□□□□□ -0.48
SHKBP1-203ENST00000594298 DNLZQ5SXM8 178 aa12.05□□□□□ -0.48
SHKBP1-203ENST00000594298 NHLRC2Q8NBF2 726 aa12.05□□□□□ -0.48
SHKBP1-203ENST00000594298 VSIG2Q96IQ7 327 aa12.05□□□□□ -0.48
SHKBP1-203ENST00000594298 ZNF479Q96JC4 524 aa12.05□□□□□ -0.48
SHKBP1-203ENST00000594298 MLST8Q9BVC4 326 aa12.05□□□□□ -0.48
SHKBP1-203ENST00000594298 MED9Q9NWA0 146 aa12.05□□□□□ -0.48
SHKBP1-203ENST00000594298 IL36BQ9NZH7 164 aa12.05□□□□□ -0.48
SHKBP1-203ENST00000594298 BOLA1Q9Y3E2 137 aa12.05□□□□□ -0.48
SHKBP1-203ENST00000594298 A0A096LPF7 62 aa12.04□□□□□ -0.48
SHKBP1-203ENST00000594298 M0R036 132 aa12.04□□□□□ -0.48
SHKBP1-203ENST00000594298 SFTA3P0C7M3 94 aa12.04□□□□□ -0.48
SHKBP1-203ENST00000594298 RNASE3P12724 160 aaKnown RBP12.04□□□□□ -0.48
SHKBP1-203ENST00000594298 CRYBA4P53673 196 aa12.04□□□□□ -0.48
SHKBP1-203ENST00000594298 PIK3CD-AS1Q5SR53 167 aa12.04□□□□□ -0.48
SHKBP1-203ENST00000594298 ICOSQ9Y6W8 199 aa12.04□□□□□ -0.48
SHKBP1-203ENST00000594298 SYT8Q8NBV8 401 aa12.03□□□□□ -0.48
SHKBP1-203ENST00000594298 PCNPQ8WW12 178 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-203ENST00000594298 SMIM12Q96EX1 92 aa12.03□□□□□ -0.48
SHKBP1-203ENST00000594298 PGPEP1LA6NFU8 196 aa12.02□□□□□ -0.49
SHKBP1-203ENST00000594298 RS1O15537 224 aa12.02□□□□□ -0.49
SHKBP1-203ENST00000594298 GNG4P50150 75 aa12.02□□□□□ -0.49
SHKBP1-203ENST00000594298 LINC00315P59091 139 aa12.02□□□□□ -0.49
SHKBP1-203ENST00000594298 MRPL23Q16540 153 aaKnown RBP12.02□□□□□ -0.49
SHKBP1-203ENST00000594298 ZNF506Q5JVG8 444 aa12.02□□□□□ -0.49
SHKBP1-203ENST00000594298 Q6ZRN7 208 aaPredicted RBP12.02□□□□□ -0.49
SHKBP1-203ENST00000594298 BIN3Q9NQY0 253 aa12.02□□□□□ -0.49
SHKBP1-203ENST00000594298 TMSB15BA0A087X1C1 80 aa12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 GRIFINA4D1Z8 144 aa12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 A8MWV9 139 aa12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 ARMS2P0C7Q2 107 aa12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 CENPWQ5EE01 88 aa12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 CFAP126Q5VTH2 177 aa12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 PRR27Q6MZM9 219 aa12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 LYPD6BQ8NI32 183 aa12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 DAZAP1Q96EP5 407 aaKnown RBP12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 DERL1Q9BUN8 251 aa12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 PHLDA3Q9Y5J5 127 aa12.01□□□□□ -0.49
SHKBP1-203ENST00000594298 RBFOX3A6NFN3 312 aa12□□□□□ -0.49
SHKBP1-203ENST00000594298 H3BVH4 76 aa12□□□□□ -0.49
SHKBP1-203ENST00000594298 CXCL1P09341 107 aa12□□□□□ -0.49
SHKBP1-203ENST00000594298 RAB19A4D1S5 217 aa11.99□□□□□ -0.49
SHKBP1-203ENST00000594298 SIVA1O15304 175 aa11.99□□□□□ -0.49
SHKBP1-203ENST00000594298 MGST1P10620 155 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-203ENST00000594298 PGPEP1Q9NXJ5 209 aa11.99□□□□□ -0.49
SHKBP1-203ENST00000594298 GYPEP15421 78 aa11.98□□□□□ -0.49
SHKBP1-203ENST00000594298 GATA1P15976 413 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-203ENST00000594298 SRIP30626 198 aa11.98□□□□□ -0.49
SHKBP1-203ENST00000594298 ZFP2Q6ZN57 461 aa11.98□□□□□ -0.49
SHKBP1-203ENST00000594298 SH2D6Q7Z4S9 175 aa11.98□□□□□ -0.49
SHKBP1-203ENST00000594298 PRADC1Q9BSG0 188 aa11.98□□□□□ -0.49
SHKBP1-203ENST00000594298 TRBV6-4A0A1B0GX49 114 aa11.97□□□□□ -0.49
SHKBP1-203ENST00000594298 TMEM250H0YL14 139 aa11.97□□□□□ -0.49
SHKBP1-203ENST00000594298 NEGR1Q7Z3B1 354 aa11.97□□□□□ -0.49
SHKBP1-203ENST00000594298 ZFP82Q8N141 532 aa11.97□□□□□ -0.49
SHKBP1-203ENST00000594298 EIF5A2Q9GZV4 153 aaKnown RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms