RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 MED14OSP0DP75 135 aa11.27□□□□□ -0.61
SMARCA4-219ENST00000592604 GAGE13Q4V321 117 aa11.26□□□□□ -0.61
SMARCA4-219ENST00000592604 BAALCQ8WXS3 180 aa11.26□□□□□ -0.61
SMARCA4-219ENST00000592604 KLK15Q9H2R5 256 aa11.26□□□□□ -0.61
SMARCA4-219ENST00000592604 OVOL1O14753 267 aa11.26□□□□□ -0.61
SMARCA4-219ENST00000592604 LGALS1P09382 135 aaKnown RBP11.26□□□□□ -0.61
SMARCA4-219ENST00000592604 C19orf54Q5BKX5 351 aa11.26□□□□□ -0.61
SMARCA4-219ENST00000592604 C2orf66Q6UXQ4 117 aa11.26□□□□□ -0.61
SMARCA4-219ENST00000592604 GPHB5Q86YW7 130 aa11.26□□□□□ -0.61
SMARCA4-219ENST00000592604 ZNF418Q8TF45 676 aaPredicted RBP11.26□□□□□ -0.61
SMARCA4-219ENST00000592604 VPREB3Q9UKI3 123 aa11.26□□□□□ -0.61
SMARCA4-219ENST00000592604 FAM223BA6NKX1 122 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 C5orf47Q569G3 176 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 AMTNQ6UX39 209 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 FAM223AQ8IWN6 122 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 RPL39LQ96EH5 51 aaKnown RBP11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 PPDPFQ9H3Y8 114 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 RAXQ9Y2V3 346 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 ASIPP42127 132 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 ETDBQ3ZM63 59 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 MORN3Q6PF18 240 aaPredicted RBP11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 SPAG8Q99932 426 aaPredicted RBP11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 SOCS3O14543 225 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 HOXA3O43365 443 aaPredicted RBP11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 SH2D6Q7Z4S9 175 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 C14orf178Q8N769 122 aaPredicted RBP11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 RAX2Q96IS3 184 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 FAM19A4Q96LR4 140 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 CITED2Q99967 270 aaPredicted RBP11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 CYSLTR1Q9Y271 337 aa11.25□□□□□ -0.61
SMARCA4-219ENST00000592604 SPTBN2O15020 2390 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 PRSS29PA6NIE9 313 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 S100A4P26447 101 aaKnown RBP11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 CRIP2P52943 208 aaPredicted RBP11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 OR10J6PQ8NGY7 276 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 PHLDA3Q9Y5J5 127 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 TRAV41A0A0B4J266 112 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 NPFFO15130 113 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 PPP1R17O96001 155 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 NBL1P41271 181 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 APRG1Q8IVJ8 170 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 POM121L12Q8N7R1 296 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 ANAPC13Q9BS18 74 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 PRADC1Q9BSG0 188 aa11.24□□□□□ -0.61
SMARCA4-219ENST00000592604 ANXA2RQ3ZCQ2 193 aa11.23□□□□□ -0.61
SMARCA4-219ENST00000592604 SPRY2O43597 315 aa11.23□□□□□ -0.61
SMARCA4-219ENST00000592604 A0A1W2PPR1 153 aa11.22□□□□□ -0.61
SMARCA4-219ENST00000592604 COX6B1P14854 86 aa11.22□□□□□ -0.61
SMARCA4-219ENST00000592604 LMO4P61968 165 aa11.22□□□□□ -0.61
SMARCA4-219ENST00000592604 FOXC1Q12948 553 aa11.22□□□□□ -0.61
SMARCA4-219ENST00000592604 NDUFA4O00483 81 aa11.22□□□□□ -0.61
SMARCA4-219ENST00000592604 UNQ9165/PRO28630Q6UXU0 137 aa11.22□□□□□ -0.61
SMARCA4-219ENST00000592604 UBE2D1P51668 147 aa11.21□□□□□ -0.61
SMARCA4-219ENST00000592604 MOB4Q9Y3A3 225 aa11.21□□□□□ -0.61
SMARCA4-219ENST00000592604 ZNF815PA8K554 130 aa11.21□□□□□ -0.62
SMARCA4-219ENST00000592604 MGPP08493 103 aa11.21□□□□□ -0.62
SMARCA4-219ENST00000592604 RNASE3P12724 160 aaKnown RBP11.21□□□□□ -0.62
SMARCA4-219ENST00000592604 SPTA1P02549 2419 aa11.2□□□□□ -0.62
SMARCA4-219ENST00000592604 IGHV1-69DA0A0B4J2H0 117 aa11.2□□□□□ -0.62
SMARCA4-219ENST00000592604 NXPH4O95158 308 aa11.2□□□□□ -0.62
SMARCA4-219ENST00000592604 CRYGDP07320 174 aa11.2□□□□□ -0.62
SMARCA4-219ENST00000592604 C1QTNF4Q9BXJ3 329 aa11.2□□□□□ -0.62
SMARCA4-219ENST00000592604 IGHV4OR15-8A0A075B7B6 117 aa11.2□□□□□ -0.62
SMARCA4-219ENST00000592604 A0A087WW49 117 aa11.2□□□□□ -0.62
SMARCA4-219ENST00000592604 SPINK8P0C7L1 97 aa11.2□□□□□ -0.62
SMARCA4-219ENST00000592604 KIF25-AS1Q9Y6Z4 181 aa11.2□□□□□ -0.62
SMARCA4-219ENST00000592604 PTPRZ1P23471 2315 aaPredicted RBP11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 LINC01549A6NIU2 74 aa11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 GNRH2O43555 120 aa11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 RNASE4P34096 147 aaKnown RBP11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 LINC00315P59091 139 aa11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 TMEM219Q86XT9 240 aa11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 TRBV12-3P01733 135 aa11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 PLEKHB2Q96CS7 222 aa11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 LINC00527Q9UJ94 153 aa11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 MUC4Q99102 2169 aa11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 DUSP14O95147 198 aaKnown RBP11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 DEFB1P60022 68 aa11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 PAPPA-AS1Q5QFB9 102 aa11.19□□□□□ -0.62
SMARCA4-219ENST00000592604 RELNP78509 3460 aa11.18□□□□□ -0.62
SMARCA4-219ENST00000592604 TSHBP01222 138 aa11.18□□□□□ -0.62
SMARCA4-219ENST00000592604 KLRB1Q12918 225 aa11.18□□□□□ -0.62
SMARCA4-219ENST00000592604 CFAP126Q5VTH2 177 aa11.18□□□□□ -0.62
SMARCA4-219ENST00000592604 SCGB1D4Q6XE38 83 aa11.18□□□□□ -0.62
SMARCA4-219ENST00000592604 ATP6V0E2Q8NHE4 81 aa11.18□□□□□ -0.62
SMARCA4-219ENST00000592604 CSDC2Q9Y534 153 aaKnown RBP11.18□□□□□ -0.62
SMARCA4-219ENST00000592604 IGLV4-69A0A075B6H9 119 aa11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 IGIPA6NJ69 53 aa11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 CD7P09564 240 aa11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 INSL3P51460 131 aa11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 DLX4Q92988 240 aaPredicted RBP11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 BPESC1Q9GZL8 116 aa11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 C11orf86A6NJI1 115 aa11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 POLR2KP53803 58 aaKnown RBP11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 SRSF9Q13242 221 aaKnown RBP eCLIP11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 PTH2Q96A98 100 aa11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 NBASA2RRP1 2371 aa11.17□□□□□ -0.62
SMARCA4-219ENST00000592604 KLHL30-AS1Q8NEE0 82 aa11.16□□□□□ -0.62
SMARCA4-219ENST00000592604 SPTBN1Q01082 2364 aaKnown RBP11.16□□□□□ -0.62
SMARCA4-219ENST00000592604 F6UB75 175 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 157.9 ms