RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 POLQO75417 2590 aa0.32□□□□□ -2.36
SMCHD1-204ENST00000581226 PNMA8CA0A1B0GUJ8 204 aa0.31□□□□□ -2.36
SMCHD1-204ENST00000581226 HIST1H1BP16401 226 aaKnown RBP0.31□□□□□ -2.36
SMCHD1-204ENST00000581226 CMPK1P30085 196 aa0.31□□□□□ -2.36
SMCHD1-204ENST00000581226 ATG5Q9H1Y0 275 aa0.31□□□□□ -2.36
SMCHD1-204ENST00000581226 BLMP54132 1417 aaPredicted RBP0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 MUC22E2RYF6 1773 aaPredicted RBP0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 A0A096LNT2 108 aa0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 CCKP06307 115 aa0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 SCGB1A1P11684 91 aa0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 KDELR1P24390 212 aa0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 SLC25A26Q70HW3 274 aa0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 SLC35B3Q9H1N7 401 aa0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 LSM2Q9Y333 95 aaKnown RBP0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 ANK2Q01484 3957 aa0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 AKAP11Q9UKA4 1901 aa0.3□□□□□ -2.36
SMCHD1-204ENST00000581226 ARPC5O15511 151 aa0.29□□□□□ -2.36
SMCHD1-204ENST00000581226 PLGLB1Q02325 96 aa0.29□□□□□ -2.36
SMCHD1-204ENST00000581226 SPINK13Q1W4C9 94 aa0.29□□□□□ -2.36
SMCHD1-204ENST00000581226 CCDC153Q494R4 210 aa0.29□□□□□ -2.36
SMCHD1-204ENST00000581226 CALML5Q9NZT1 146 aa0.29□□□□□ -2.36
SMCHD1-204ENST00000581226 BORCS7-ASMTA0A0B4J1R7 106 aa0.28□□□□□ -2.36
SMCHD1-204ENST00000581226 TRBV10-1A0A0K0K1A3 114 aa0.28□□□□□ -2.36
SMCHD1-204ENST00000581226 LOC105371267A0A1B0GV96 52 aa0.28□□□□□ -2.36
SMCHD1-204ENST00000581226 FXYD1O00168 92 aa0.28□□□□□ -2.36
SMCHD1-204ENST00000581226 POLR2JP52435 117 aaKnown RBP0.28□□□□□ -2.36
SMCHD1-204ENST00000581226 KLKP1Q107X0 134 aa0.28□□□□□ -2.36
SMCHD1-204ENST00000581226 TPRP12270 2363 aaKnown RBP0.28□□□□□ -2.36
SMCHD1-204ENST00000581226 TTC28Q96AY4 2481 aa0.28□□□□□ -2.36
SMCHD1-204ENST00000581226 UHRF1BP1LA0JNW5 1464 aa0.28□□□□□ -2.37
SMCHD1-204ENST00000581226 CEP152O94986 1710 aa0.27□□□□□ -2.37
SMCHD1-204ENST00000581226 TNS1Q9HBL0 1735 aaKnown RBP0.27□□□□□ -2.37
SMCHD1-204ENST00000581226 FXYD6P3P58550 94 aa0.27□□□□□ -2.37
SMCHD1-204ENST00000581226 PYDC1Q8WXC3 89 aa0.27□□□□□ -2.37
SMCHD1-204ENST00000581226 ARHGEF10O15013 1369 aa0.27□□□□□ -2.37
SMCHD1-204ENST00000581226 ABCA12Q86UK0 2595 aa0.27□□□□□ -2.37
SMCHD1-204ENST00000581226 PHIPQ8WWQ0 1821 aa0.27□□□□□ -2.37
SMCHD1-204ENST00000581226 TRAV17A0A0B4J275 112 aa0.26□□□□□ -2.37
SMCHD1-204ENST00000581226 HIST1H1AQ02539 215 aaPredicted RBP0.26□□□□□ -2.37
SMCHD1-204ENST00000581226 CLLU1Q5K131 121 aa0.26□□□□□ -2.37
SMCHD1-204ENST00000581226 UNQ5815/PRO19632Q6UWF5 114 aa0.26□□□□□ -2.37
SMCHD1-204ENST00000581226 SNX29P2Q8IUI4 249 aa0.26□□□□□ -2.37
SMCHD1-204ENST00000581226 AIF1LQ9BQI0 150 aa0.26□□□□□ -2.37
SMCHD1-204ENST00000581226 ERCC6Q03468 1493 aa0.26□□□□□ -2.37
SMCHD1-204ENST00000581226 IGF2RP11717 2491 aa0.26□□□□□ -2.37
SMCHD1-204ENST00000581226 ZFYVE26Q68DK2 2539 aa0.26□□□□□ -2.37
SMCHD1-204ENST00000581226 OTOGQ6ZRI0 2925 aa0.25□□□□□ -2.37
SMCHD1-204ENST00000581226 MYO7AQ13402 2215 aa0.25□□□□□ -2.37
SMCHD1-204ENST00000581226 LAMB1P07942 1786 aa0.25□□□□□ -2.37
SMCHD1-204ENST00000581226 SMIM24O75264 130 aa0.25□□□□□ -2.37
SMCHD1-204ENST00000581226 SLC25A6P12236 298 aa0.25□□□□□ -2.37
SMCHD1-204ENST00000581226 OR2T2Q6IF00 324 aa0.25□□□□□ -2.37
SMCHD1-204ENST00000581226 ATP11AUNQ6ZP68 121 aa0.25□□□□□ -2.37
SMCHD1-204ENST00000581226 ATP6V0E2Q8NHE4 81 aa0.25□□□□□ -2.37
SMCHD1-204ENST00000581226 PPDPFLQ8WWR9 84 aa0.25□□□□□ -2.37
SMCHD1-204ENST00000581226 TMEM14BQ9NUH8 114 aa0.25□□□□□ -2.37
SMCHD1-204ENST00000581226 ARFGEF1Q9Y6D6 1849 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 ADGRB1O14514 1584 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 CCDC171Q6TFL3 1326 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 A0A087WTM6 91 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 FAM236AA0A1B0GUQ0 79 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 FAM236BA0A1B0GV22 79 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 M0R2P5 195 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 PITX3O75364 302 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 DBIP07108 87 aaKnown RBP0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 MPC1LP0DKB6 136 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 EMX2Q04743 252 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 SPANXA1Q9NS26 97 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 TAS2R8Q9NYW2 309 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 CELSR2Q9HCU4 2923 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 F8P00451 2351 aa0.24□□□□□ -2.37
SMCHD1-204ENST00000581226 PARP14Q460N5 1801 aa0.23□□□□□ -2.37
SMCHD1-204ENST00000581226 IGLC6P0CF74 106 aa0.23□□□□□ -2.37
SMCHD1-204ENST00000581226 PYYP10082 97 aa0.23□□□□□ -2.37
SMCHD1-204ENST00000581226 ELOF1P60002 83 aaKnown RBP0.23□□□□□ -2.37
SMCHD1-204ENST00000581226 CKS1BP61024 79 aa0.23□□□□□ -2.37
SMCHD1-204ENST00000581226 SPANXCQ9NY87 97 aa0.23□□□□□ -2.37
SMCHD1-204ENST00000581226 NOP16Q9Y3C1 178 aaKnown RBP0.23□□□□□ -2.37
SMCHD1-204ENST00000581226 PRG4Q92954 1404 aaPredicted RBP0.22□□□□□ -2.37
SMCHD1-204ENST00000581226 DOCK11Q5JSL3 2073 aa0.22□□□□□ -2.37
SMCHD1-204ENST00000581226 TRAV2A0A0B4J234 112 aa0.22□□□□□ -2.37
SMCHD1-204ENST00000581226 M0R129 80 aa0.22□□□□□ -2.37
SMCHD1-204ENST00000581226 LINC00694P0DN24 101 aa0.22□□□□□ -2.37
SMCHD1-204ENST00000581226 NPC2P61916 151 aa0.22□□□□□ -2.37
SMCHD1-204ENST00000581226 ALX1Q15699 326 aa0.22□□□□□ -2.37
SMCHD1-204ENST00000581226 DYNLRB2Q8TF09 96 aa0.22□□□□□ -2.37
SMCHD1-204ENST00000581226 NRXN2Q9P2S2 1712 aa0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 LRP1Q07954 4544 aaKnown RBP0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 TRBV20-1A0A075B6N2 111 aa0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 TEX49A0A1B0GTD5 131 aa0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 RBP4P02753 201 aa0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 TSPAN19P0C672 248 aa0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 MAGOHBQ96A72 148 aaKnown RBP0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 IFI27L1Q96BM0 104 aa0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 GSKIPQ9P0R6 139 aa0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 CELSR1Q9NYQ6 3014 aa0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 OVOS2A0A0J9YW53 1432 aa0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 OVOS2Q6IE36 1432 aa0.21□□□□□ -2.38
SMCHD1-204ENST00000581226 KDM6BO15054 1643 aa0.2□□□□□ -2.38
SMCHD1-204ENST00000581226 CADP27708 2225 aa0.2□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms